<86>Jul 4 04:14:53 userdel[4104881]: delete user 'rooter' <86>Jul 4 04:14:53 userdel[4104881]: removed group 'rooter' owned by 'rooter' <86>Jul 4 04:14:53 userdel[4104881]: removed shadow group 'rooter' owned by 'rooter' <86>Jul 4 04:14:53 groupadd[4104942]: group added to /etc/group: name=rooter, GID=2570 <86>Jul 4 04:14:53 groupadd[4104942]: group added to /etc/gshadow: name=rooter <86>Jul 4 04:14:53 groupadd[4104942]: new group: name=rooter, GID=2570 <86>Jul 4 04:14:53 useradd[4104981]: new user: name=rooter, UID=2570, GID=2570, home=/root, shell=/bin/bash, from=none <86>Jul 4 04:14:53 userdel[4105048]: delete user 'builder' <86>Jul 4 04:14:53 userdel[4105048]: removed group 'builder' owned by 'builder' <86>Jul 4 04:14:53 userdel[4105048]: removed shadow group 'builder' owned by 'builder' <86>Jul 4 04:14:53 groupadd[4105110]: group added to /etc/group: name=builder, GID=2571 <86>Jul 4 04:14:53 groupadd[4105110]: group added to /etc/gshadow: name=builder <86>Jul 4 04:14:53 groupadd[4105110]: new group: name=builder, GID=2571 <86>Jul 4 04:14:53 useradd[4105167]: new user: name=builder, UID=2571, GID=2571, home=/usr/src, shell=/bin/bash, from=none warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root <13>Jul 4 04:14:55 rpmi: xorg-proto-devel-2025.1-alt1 sisyphus+405503.100.1.1 1768821375 installed <13>Jul 4 04:14:55 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Jul 4 04:14:55 rpmi: libCVector-1.0.3.1-alt2 1316809891 installed <13>Jul 4 04:14:55 rpmi: libquadmath0-15.2.1-alt2 sisyphus+416693.300.3.1 1777480577 installed <13>Jul 4 04:14:55 rpmi: libgfortran5-15.2.1-alt2 sisyphus+416693.300.3.1 1777480577 installed <13>Jul 4 04:14:55 rpmi: libCBFlib-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495167 installed <13>Jul 4 04:14:55 rpmi: libquadmath15-devel-15.2.1-alt2 sisyphus+416693.300.3.1 1777480577 installed <13>Jul 4 04:14:55 rpmi: libCVector-devel-1.0.3.1-alt2 1316809891 installed <13>Jul 4 04:14:55 rpmi: libNearTree-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed <13>Jul 4 04:14:55 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Jul 4 04:14:55 rpmi: gcc-fortran-common-1.4.28-alt1 sisyphus+348678.100.1.1 1716396142 installed <13>Jul 4 04:14:55 rpmi: libgfortran15-devel-15.2.1-alt2 sisyphus+416693.300.3.1 1777480577 installed <13>Jul 4 04:14:55 rpmi: libX11-locales-3:1.8.13-alt1 sisyphus+407695.100.1.1 1770632898 installed <13>Jul 4 04:14:55 rpmi: libXdmcp-1.1.5-alt1 sisyphus+343583.700.1.1 1711441073 installed <13>Jul 4 04:14:55 rpmi: libxcb-1.17.0-alt1 sisyphus+345308.200.1.1 1713342009 installed <13>Jul 4 04:14:55 rpmi: libX11-3:1.8.13-alt1 sisyphus+407695.100.1.1 1770632900 installed <13>Jul 4 04:14:55 rpmi: libXext-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441114 installed <13>Jul 4 04:14:55 rpmi: libXi-1.8.3-alt1 sisyphus+418570.100.1.1 1779171840 installed <13>Jul 4 04:14:55 rpmi: libXfixes-6.0.1-alt1 sisyphus+331490.300.1.1 1697023235 installed <13>Jul 4 04:14:56 rpmi: libxcb-devel-1.17.0-alt1 sisyphus+345308.200.1.1 1713342009 installed <13>Jul 4 04:14:56 rpmi: libX11-devel-3:1.8.13-alt1 sisyphus+407695.100.1.1 1770632900 installed <13>Jul 4 04:14:56 rpmi: libXext-devel-1.3.6-alt1 sisyphus+343583.1000.1.1 1711441114 installed <13>Jul 4 04:14:56 rpmi: libXfixes-devel-6.0.1-alt1 sisyphus+331490.300.1.1 1697023235 installed <13>Jul 4 04:14:56 rpmi: libCQRlib-1.1.2-alt2 1316809838 installed <13>Jul 4 04:14:56 rpmi: libCQRlib-devel-1.1.2-alt2 1316809838 installed <13>Jul 4 04:14:56 rpmi: libXi-devel-1.8.3-alt1 sisyphus+418570.100.1.1 1779171840 installed <13>Jul 4 04:14:56 rpmi: libgfortran-devel-15-alt2 sisyphus+416693.400.4.1 1777543413 installed <13>Jul 4 04:14:56 rpmi: libNearTree-devel-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed <13>Jul 4 04:14:56 rpmi: libCBFlib-devel-0.9.2.3-alt3 sisyphus+269998.200.2.1 1618495167 installed <13>Jul 4 04:14:56 rpmi: xorg-cf-files-1.0.8-alt1 sisyphus+402873.100.1.1 1765731265 installed <13>Jul 4 04:14:56 rpmi: imake-1.0.8-alt2 sisyphus+380418.100.1.1 1743780389 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/RasMol-2.7.5.2-alt7.nosrc.rpm (w1.gzdio) Installing RasMol-2.7.5.2-alt7.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpmb-tmp.zbmFQA + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf RasMol-2.7.5.2 + echo 'Source #0 (rasmol-2.7.5.2-13May11.tar.gz):' Source #0 (rasmol-2.7.5.2-13May11.tar.gz): + /usr/bin/gzip -dc /usr/src/RPM/SOURCES/rasmol-2.7.5.2-13May11.tar.gz + /bin/tar -xf - + cd RasMol-2.7.5.2 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):' Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch): + /usr/bin/patch -p1 patching file src/Imakefile patching file src/Makefile.in + sed -i 's,^#include \(<\|"\)cbf,#include \1cbf/cbf,' src/cif.h src/maps.c + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpmb-tmp.kxOzUP + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' + pushd src ~/RPM/BUILD/RasMol-2.7.5.2/src ~/RPM/BUILD/RasMol-2.7.5.2 + xmkmf imake -DUseInstalled -I/usr/share/X11/config In file included from /usr/share/X11/config/Imake.tmpl:110, from Imakefile.c:34: /usr/share/X11/config/linux.cf:202: warning: 'XAppLoadDir' redefined 202 | # define XAppLoadDir /usr/share/X11/app-defaults In file included from /usr/share/X11/config/site.def:45, from /usr/share/X11/config/Imake.tmpl:47: /usr/share/X11/config/host.def:29: note: this is the location of the previous definition 29 | #define XAppLoadDir /etc/X11/app-defaults In file included from /usr/share/X11/config/site.def:155, from /usr/share/X11/config/Imake.tmpl:116: /usr/share/X11/config/host.def:29: warning: 'XAppLoadDir' redefined 29 | #define XAppLoadDir /etc/X11/app-defaults /usr/share/X11/config/linux.cf:202: note: this is the location of the previous definition 202 | # define XAppLoadDir /usr/share/X11/app-defaults In file included from /usr/share/X11/config/Imake.tmpl:2147: /usr/share/X11/config/X11.rules:39: warning: 'XBinDir' redefined 39 | # define XBinDir $(XPROJECTROOT)/bin /usr/share/X11/config/host.def:14: note: this is the location of the previous definition 14 | #define XBinDir /usr/bin /usr/share/X11/config/X11.rules:47: warning: 'XUsrLibDirPath' redefined 47 | # define XUsrLibDirPath $(USRLIBDIR):$(XPROJECTROOT)/lib /usr/share/X11/config/host.def:16: note: this is the location of the previous definition 16 | #define XUsrLibDirPath /usr/lib + subst s/-mcpu=i686/-mtune=i686/ Makefile + make clean rasmol DEPTHDEF=-DEIGHTBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from rasmol.c:203: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] 1170 | static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { | ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 2152 | register Long dx, dy, dz; | ^~ molecule.c: In function 'FreeAlloc': molecule.c:3274:6: warning: old-style function definition [-Wold-style-definition] 3274 | void FreeAlloc( data ) | ^~~~~~~~~ molecule.c: At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] 1722 | static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) | ^~~~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 929 | for (index=0; index<10; index++) | ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 931 | SaveQuat.w = DialQRot.w; | ^~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] 1072 | Symbol __far * prevsymbol; | ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:13: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] 1493 | int checkfile; | ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2215 | case(SheetTok): if( Info.laddercount < 0 ) | ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2217 | pred = PredSheet; | ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2219 | case(TurnTok): if( Info.turncount < 0 ) | ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2221 | pred = PredTurn; | ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2223 | case(CystineTok): if( Info.ssbondcount < 0 ) | ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2225 | pred = PredCystine; | ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2227 | case(CisBondedTok):if( Info.cisbondcount<0 ) | ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2229 | pred = PredCisBond; | ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2328 | case('-'): if( NextIf(NumberTok,ErrNotNum) ) | ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2330 | return( ParseRange(True) ); | ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4261 | for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) | ^~~ command.c:4263:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4263 | SelectCount = 0; | ^~~~~~~~~~~ command.c:4279:25: warning: value computed is not used [-Wunused-value] 4279 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4296:41: warning: value computed is not used [-Wunused-value] 4296 | *TokenPtr--; | ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] 4337 | *TokenPtr++; | ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] 4752 | size_t visits; | ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 7488 | case(ResetTok): for( i=0; i<10; i++ ) | ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 7490 | ReDrawFlag |= RFDials; | ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7501 | case(HelpTok): if( !HelpFileName ) | ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7503 | if( HelpInfo ) | ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 7964 | } else if( *ptr=='[' ) | ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 7967 | if( len < MAXBUFFLEN-1 ) | ^~ command.c: At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] 902 | static int Define_Symbol(const char __far * string, const char __far * definition) { | ^~~~~~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 559 | if( (ptr->irad)+iProbeRad>MaxAtomRadius ) | ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 561 | ptr->flag |= ExpandFlag; | ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 563 | if( ptr->irad>MaxAtomRadius ) | ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 565 | ptr->flag &= ~ExpandFlag; | ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2282 | register int i,shade,nshade,result; | ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 3064 | if( !Database ) | ^~ transfor.c:3066:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 3066 | ColourBondNone(); | ^~~~~~~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2076 | if( !QAtom ) | ^~ render.c:2079:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2079 | if( PickMode==PickCentr && shift ) | ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 2173 | } else | ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 2175 | QAtom->label = label; | ^~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 987 | if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; | ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; | ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 989 | if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; | ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1113 | if( !Database ) | ^~ repres.c:1116:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1116 | DotCount = density; | ^~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] 645 | register Pixel c, ca, mid; | ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:13: warning: variable 'updown' set but not used [-Wunused-but-set-variable] 2606 | int updown, ifirst; | ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] 2986 | register int p, alts, altc; | ^~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 1998 | register int temp, tump; | ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 2038 | register int temp, tump; | ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:31: warning: variable 'z1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:27: warning: variable 'y1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c:2601:23: warning: variable 'x1' set but not used [-Wunused-but-set-variable] 2601 | register Real x1, y1, z1; /* coordinates after rotation and translation*/ | ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] 2956 | register int qsx, qsy, qsz; | ^~~ outfile.c: At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] 2082 | static void WriteVectMapBonds( void) { | ^~~~~~~~~~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] 2342 | static void WriteVRMLLine( int src, int dst, int shade, int *flag ) | ^~~~~~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 671 | for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) | ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 696 | if (AtomNum1) break; | ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1365 | if( !FetchRecord(DataFile,Record) ) | ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1367 | xpos = ypos = zpos = 0.0; | ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2210 | if (!cif_datablock_name (cif, &dbname)) | ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2212 | Info.moleculename[55] = '\0'; | ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] 3232 | int oNMRModel; | ^~~~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -m32 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:205:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 205 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cif_fract.c: In function 'invxfrm': cif_fract.c:358:19: error: conflicting types for 'det'; have 'double(void)' 358 | extern double det(); | ^~~ cif_fract.c:334:8: note: previous definition of 'det' with type 'double(double (*)[3])' 334 | double det(double __far mat[3][3]) | ^~~ cif_fract.c:375:12: error: too many arguments to function 'det'; expected 0, have 1 375 | xdet = det(mato2f); | ^~~ ~~~~~~ cif_fract.c:358:19: note: declared here 358 | extern double det(); | ^~~ make: *** [: cif_fract.o] Error 1 make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' error: Bad exit status from /usr/src/tmp/rpmb-tmp.kxOzUP (%build) RPM build errors: Bad exit status from /usr/src/tmp/rpmb-tmp.kxOzUP (%build) Command exited with non-zero status 1 1.71user 0.17system 0:01.83elapsed 102%CPU (0avgtext+0avgdata 51412maxresident)k 0inputs+0outputs (0major+121302minor)pagefaults 0swaps hsh-rebuild: rebuild of `RasMol-2.7.5.2-alt7.src.rpm' failed. Command exited with non-zero status 1 2.64user 0.83system 0:07.62elapsed 45%CPU (0avgtext+0avgdata 143468maxresident)k 2440inputs+0outputs (0major+198594minor)pagefaults 0swaps