<86>Mar 25 05:30:36 userdel[2553503]: delete user 'rooter' <86>Mar 25 05:30:36 userdel[2553503]: removed group 'rooter' owned by 'rooter' <86>Mar 25 05:30:36 userdel[2553503]: removed shadow group 'rooter' owned by 'rooter' <86>Mar 25 05:30:36 groupadd[2553513]: group added to /etc/group: name=rooter, GID=1293 <86>Mar 25 05:30:36 groupadd[2553513]: group added to /etc/gshadow: name=rooter <86>Mar 25 05:30:36 groupadd[2553513]: new group: name=rooter, GID=1293 <86>Mar 25 05:30:36 useradd[2553523]: new user: name=rooter, UID=1293, GID=1293, home=/root, shell=/bin/bash <86>Mar 25 05:30:36 userdel[2553532]: delete user 'builder' <86>Mar 25 05:30:36 userdel[2553532]: removed group 'builder' owned by 'builder' <86>Mar 25 05:30:36 userdel[2553532]: removed shadow group 'builder' owned by 'builder' <86>Mar 25 05:30:36 groupadd[2553539]: group added to /etc/group: name=builder, GID=1294 <86>Mar 25 05:30:36 groupadd[2553539]: group added to /etc/gshadow: name=builder <86>Mar 25 05:30:36 groupadd[2553539]: new group: name=builder, GID=1294 <86>Mar 25 05:30:36 useradd[2553547]: new user: name=builder, UID=1294, GID=1294, home=/usr/src, shell=/bin/bash warning: Macro %cmake not found warning: Macro %cmake_build not found warning: Macro %cmake_install not found <13>Mar 25 05:30:40 rpmi: libjpeg-2:2.1.2-alt1.2 sisyphus+300827.100.2.1 1653916654 installed <13>Mar 25 05:30:40 rpmi: libpng16-1.6.39-alt1 sisyphus+310490.100.1.1 1669195208 installed <13>Mar 25 05:30:40 rpmi: libwayland-client-1.21.0-alt1.1 sisyphus+302874.200.2.1 1656661872 installed <13>Mar 25 05:30:40 rpmi: libexpat-2.5.0-alt1 sisyphus+309227.100.1.1 1667075766 installed <13>Mar 25 05:30:40 rpmi: libogg-1.3.5-alt1 sisyphus+278100.3400.1.1 1626059695 installed <13>Mar 25 05:30:40 rpmi: libgudev-1:237-alt1 sisyphus+282754.100.1.1 1629006690 installed <13>Mar 25 05:30:40 rpmi: libwebp7-1.3.0-alt1 sisyphus+313492.100.1.1 1673749692 installed <13>Mar 25 05:30:40 rpmi: libboost_system1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:40 rpmi: libvorbis-1.3.7-alt1 sisyphus+275738.100.1.1 1624751609 installed <13>Mar 25 05:30:40 rpmi: libwayland-egl-4:18.1.0-alt1.1 sisyphus+302874.200.2.1 1656661872 installed <13>Mar 25 05:30:40 rpmi: liblcms2-2.15-alt1 sisyphus+316039.100.1.1 1677666336 installed <13>Mar 25 05:30:40 rpmi: perl-HTTP-Date-6.05-alt1 sisyphus+258981.100.1.1 1601542386 installed <13>Mar 25 05:30:40 rpmi: libraw1394-11-2.1.2-alt1 sisyphus+278262.100.1.1 1626081867 installed <13>Mar 25 05:30:40 rpmi: libwayland-server-1.21.0-alt1.1 sisyphus+302874.200.2.1 1656661872 installed <13>Mar 25 05:30:40 rpmi: libgomp1-12.2.1-alt1 sisyphus+317240.100.2.1 1679582610 installed <13>Mar 25 05:30:40 rpmi: libfribidi-1.0.12-alt1 sisyphus+298746.100.1.1 1650435950 installed <13>Mar 25 05:30:40 rpmi: libopus-1.3.1-alt158.gbce1f392.1 sisyphus+307793.100.2.1 1664814221 installed <13>Mar 25 05:30:40 rpmi: libopenjpeg2.0-2.5.0-alt1 sisyphus+299926.300.3.1 1652478844 installed <13>Mar 25 05:30:41 rpmi: libicu72-1:7.2.1-alt1 sisyphus+308882.100.1.1 1666532135 installed <13>Mar 25 05:30:41 rpmi: xorg-proto-devel-2022.1-alt1 sisyphus+299488.100.1.1 1651731532 installed <13>Mar 25 05:30:41 rpmi: libtheora-2:1.1.1-alt6 sisyphus+277967.100.1.1 1625928124 installed <13>Mar 25 05:30:41 rpmi: libwxBase3.0-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:41 rpmi: libhyphen-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Mar 25 05:30:41 rpmi: libepoxy-1.5.10-alt1 sisyphus+296853.200.2.1 1647631868 installed <13>Mar 25 05:30:41 rpmi: libsqlite3-3.41.0-alt1 sisyphus+315678.100.1.1 1677187138 installed <13>Mar 25 05:30:41 rpmi: perl-XML-NamespaceSupport-1.12-alt1 1491296348 installed <13>Mar 25 05:30:41 rpmi: libusb-1.0.26-alt2 sisyphus+305525.100.1.1 1660924428 installed <13>Mar 25 05:30:41 rpmi: liborc-0.4.33-alt1 sisyphus+309862.200.2.1 1671193026 installed <13>Mar 25 05:30:41 rpmi: libserd-0.30.10-alt1_3 sisyphus+288138.100.1.1 1635175832 installed <13>Mar 25 05:30:41 rpmi: libspeex-1.2-alt2 sisyphus+287335.100.1.1 1634381376 installed <13>Mar 25 05:30:41 rpmi: liblame-3.100-alt1 sisyphus+276241.100.1.2 1624925655 installed <13>Mar 25 05:30:41 rpmi: libgsm-1.0.17-alt1 sisyphus+275359.100.2.1 1624907612 installed <13>Mar 25 05:30:41 rpmi: libidn2-2.3.4-alt1 sisyphus+309023.100.1.1 1666791089 installed <13>Mar 25 05:30:41 rpmi: libnettle8-3.8.1-alt2 sisyphus+308213.100.1.1 1665439443 installed <13>Mar 25 05:30:41 rpmi: libtasn1-4.19.0-alt1 sisyphus+305700.100.1.1 1661359628 installed <13>Mar 25 05:30:41 rpmi: libatk-2.48.0-alt1 sisyphus+317076.400.1.1 1679344534 installed <13>Mar 25 05:30:41 rpmi: libsord-0.16.8-alt1_2 sisyphus+286960.100.1.1 1634067443 installed <13>Mar 25 05:30:41 rpmi: libdc1394-22-2.2.5-alt1.1 sisyphus+311484.100.1.1 1670647148 installed <13>Mar 25 05:30:41 rpmi: libflac8-1.3.3.0.79.37d1-alt2 sisyphus+278100.1400.1.1 1626058888 installed <13>Mar 25 05:30:41 rpmi: libwayland-cursor-1.21.0-alt1.1 sisyphus+302874.200.2.1 1656661872 installed <13>Mar 25 05:30:41 rpmi: libv4l-1.24.1-alt1 sisyphus+315985.200.2.1 1677588862 installed <13>Mar 25 05:30:41 rpmi: libdv-1.0.0-alt6 sisyphus+286805.100.2.1 1633968017 installed <13>Mar 25 05:30:41 rpmi: libxslt-1.1.37-alt1 sisyphus+307481.100.1.1 1664360525 installed <13>Mar 25 05:30:41 rpmi: libxkbcommon-1.5.0-alt1 sisyphus+312911.100.1.1 1673035570 installed <13>Mar 25 05:30:41 rpmi: libwpe-1.14.1-alt1 sisyphus+314599.100.1.1 1675418192 installed <13>Mar 25 05:30:41 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Mar 25 05:30:41 rpmi: perl-Compress-Raw-Zlib-2.204-alt1 sisyphus+314931.100.1.1 1675930919 installed <13>Mar 25 05:30:41 rpmi: perl-libnet-1:3.15-alt1 sisyphus+317310.100.1.1 1679580208 installed <13>Mar 25 05:30:41 rpmi: perl-XML-SAX-Base-1.09-alt1 1494364363 installed <13>Mar 25 05:30:41 rpmi: libjack-1:1.9.22-alt1 sisyphus+316501.200.2.1 1678463952 installed <13>Mar 25 05:30:41 rpmi: libSDL2-2.26.4-alt1 sisyphus+316689.100.1.1 1678699906 installed <13>Mar 25 05:30:41 rpmi: libdvdread8-6.1.3-alt1 sisyphus+302642.100.1.1 1656163149 installed <13>Mar 25 05:30:41 rpmi: ilmbase25-common-2.5.6-alt2 sisyphus+279640.100.1.1 1626639167 installed <13>Mar 25 05:30:41 rpmi: libiex25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639167 installed <13>Mar 25 05:30:41 rpmi: libhalf25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639167 installed <13>Mar 25 05:30:41 rpmi: libzeromq-4.3.4-alt2 sisyphus+305424.100.1.1 1660736892 installed <13>Mar 25 05:30:41 rpmi: libmpg123-1.31.3-alt1 sisyphus+317036.100.1.1 1679313685 installed <13>Mar 25 05:30:41 rpmi: libsndfile-1.1.0-alt1 sisyphus+306371.40.3.1 1662942490 installed <13>Mar 25 05:30:41 rpmi: libbs2b-3.1.0-alt1.4 sisyphus+284589.100.1.1 1630750816 installed <13>Mar 25 05:30:42 rpmi: libvpx6-1.11.0-alt2 sisyphus+294379.500.5.1 1644490615 installed <13>Mar 25 05:30:42 rpmi: libglvnd-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906761 installed <13>Mar 25 05:30:42 rpmi: libtwolame-0.4.0-alt1 sisyphus+277783.100.1.1 1625798479 installed <13>Mar 25 05:30:42 rpmi: libdav1d-0.9.2-alt1 sisyphus+291906.40.5.3 1639431318 installed <13>Mar 25 05:30:42 rpmi: libaom3-3.5.0-alt1 sisyphus+312085.100.1.1 1671551781 installed <13>Mar 25 05:30:42 rpmi: libgraphite2-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605157 installed <13>Mar 25 05:30:42 rpmi: zlib-devel-1.2.13-alt1 sisyphus+309409.200.2.1 1667402045 installed <13>Mar 25 05:30:42 rpmi: libgdbm-1.8.3-alt10 sisyphus+278100.1600.1.1 1626059138 installed <13>Mar 25 05:30:42 rpmi: xml-utils-1:2.10.3-alt1 sisyphus+308392.100.3.1 1666013214 installed <13>Mar 25 05:30:42 rpmi: libbrotlicommon-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Mar 25 05:30:42 rpmi: libbrotlidec-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Mar 25 05:30:42 rpmi: libharfbuzz-7.0.1-alt1 sisyphus+315589.100.1.1 1676975795 installed <13>Mar 25 05:30:42 rpmi: libfreetype-2.13.0-alt1 sisyphus+315092.100.1.1 1676198645 installed <13>Mar 25 05:30:42 rpmi: libfontconfig1-2.14.2-alt5 sisyphus+317300.100.1.1 1679578089 installed <13>Mar 25 05:30:42 rpmi: libass9-0.17.1-alt1 sisyphus+315891.100.1.1 1677487409 installed <13>Mar 25 05:30:42 rpmi: libharfbuzz-icu-7.0.1-alt1 sisyphus+315589.100.1.1 1676975795 installed <13>Mar 25 05:30:42 rpmi: libp11-kit-0.24.1-alt1 sisyphus+293720.100.1.1 1642535281 installed <13>Mar 25 05:30:42 rpmi: libXau-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Mar 25 05:30:42 rpmi: libXau-devel-1.0.11-alt1 sisyphus+311428.100.1.1 1670577440 installed <13>Mar 25 05:30:42 rpmi: fontconfig-2.14.2-alt5 sisyphus+317300.100.1.1 1679578089 installed Updating fonts cache: <29>Mar 25 05:30:43 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Mar 25 05:30:43 rpmi: libharfbuzz-gobject-7.0.1-alt1 sisyphus+315589.100.1.1 1676975795 installed <13>Mar 25 05:30:43 rpmi: libbrotlienc-1.0.9-alt2 sisyphus+278430.100.1.2 1626213212 installed <13>Mar 25 05:30:43 rpmi: libwoff2-1.0.2-alt3 sisyphus+302729.100.1.1 1656351541 installed <13>Mar 25 05:30:43 rpmi: rpm-build-gir-0.7.3-alt3 sisyphus+242150.100.1.1 1575312005 installed <13>Mar 25 05:30:43 rpmi: libgdbm-devel-1.8.3-alt10 sisyphus+278100.1600.1.1 1626059138 installed <13>Mar 25 05:30:43 rpmi: perl-devel-1:5.34.1-alt1 sisyphus+303178.100.1.1 1656953649 installed <13>Mar 25 05:30:43 rpmi: swig-data-1:4.0.2-alt4 sisyphus+302321.100.1.1 1655603940 installed <13>Mar 25 05:30:43 rpmi: libpng-devel-1.6.39-alt1 sisyphus+310490.100.1.1 1669195208 installed <13>Mar 25 05:30:43 rpmi: libgraphite2-devel-1.3.14-alt2.1 sisyphus+279571.100.1.2 1626605157 installed <13>Mar 25 05:30:43 rpmi: libsamplerate-0.2.2-alt1 sisyphus+284642.100.1.1 1630906257 installed <13>Mar 25 05:30:43 rpmi: libinstpatch-1.1.6-alt1.1 sisyphus+279572.100.1.2 1626605112 installed <13>Mar 25 05:30:43 rpmi: libilmthread25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639167 installed <13>Mar 25 05:30:43 rpmi: libimath25-2.5.6-alt2 sisyphus+279640.100.1.1 1626639167 installed <13>Mar 25 05:30:43 rpmi: libilmimf25-2.5.6-alt5 sisyphus+314595.3240.24.1 1678352845 installed <13>Mar 25 05:30:43 rpmi: libdvdnav-6.1.1-alt1 sisyphus+279367.100.1.1 1626478897 installed <13>Mar 25 05:30:43 rpmi: libwxGTK3.0-sound_sdlu-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:43 rpmi: libsratom-0.6.6-alt1_1 sisyphus+278712.200.4.2 1626176350 installed <13>Mar 25 05:30:43 rpmi: liblilv-0.24.12-alt1_3 sisyphus+295914.100.1.1 1645726271 installed <13>Mar 25 05:30:43 rpmi: libhogweed6-3.8.1-alt2 sisyphus+308213.100.1.1 1665439443 installed <13>Mar 25 05:30:43 rpmi: libgnutls30-3.7.9-alt1 sisyphus+315353.100.1.1 1676639387 installed <13>Mar 25 05:30:43 rpmi: libngtcp2-0.13.1-alt1 sisyphus+317411.100.1.1 1679680599 installed <13>Mar 25 05:30:43 rpmi: hyphen-en-2.8.8-alt1 sisyphus+278186.100.1.1 1626075927 installed <13>Mar 25 05:30:43 rpmi: hyphen-ru-20020727-alt3 sisyphus+276848.100.1.1 1625243550 installed <13>Mar 25 05:30:43 rpmi: libwxBase3.0-devel-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:43 rpmi: icu-utils-1:7.2.1-alt1 sisyphus+308882.100.1.1 1666532135 installed <13>Mar 25 05:30:43 rpmi: libicu-devel-1:7.2.1-alt1 sisyphus+308882.100.1.1 1666532135 installed <13>Mar 25 05:30:43 rpmi: libvidstab-1.1.0-alt2.1 sisyphus+279558.100.1.2 1626596086 installed <13>Mar 25 05:30:43 rpmi: libsoundtouch-2.3.2-alt1 sisyphus+314961.100.1.1 1675954594 installed <13>Mar 25 05:30:43 rpmi: libavc1394-0.5.4-alt2 sisyphus+284572.100.1.1 1630712942 installed <13>Mar 25 05:30:43 rpmi: libiec61883-1.2.0-alt1.qa1 sisyphus+275365.100.1.2 1624491850 installed <13>Mar 25 05:30:43 rpmi: perl-File-Listing-6.15-alt1 sisyphus+298606.100.1.1 1650203737 installed <13>Mar 25 05:30:43 rpmi: libboost_atomic1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libboost_contract1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libboost_chrono1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libboost_timer1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libboost_thread1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libboost_type_erasure1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libboost_filesystem1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:43 rpmi: libyuv-0.0.1805-alt1.1 sisyphus+292944.100.1.1 1641110702 installed <13>Mar 25 05:30:43 rpmi: libncurses-6.3.20220618-alt1 sisyphus+302449.100.1.1 1655835262 installed <13>Mar 25 05:30:43 rpmi: libtinfo-devel-6.3.20220618-alt1 sisyphus+302449.100.1.1 1655835262 installed <13>Mar 25 05:30:43 rpmi: libncurses-devel-6.3.20220618-alt1 sisyphus+302449.100.1.1 1655835262 installed <13>Mar 25 05:30:43 rpmi: libmspack-0.6-alt2 sisyphus+279013.100.1.1 1626353197 installed <13>Mar 25 05:30:43 rpmi: libevdev-1.13.0-alt1 sisyphus+304671.100.1.1 1659461429 installed <13>Mar 25 05:30:43 rpmi: libhunspell-1.7.0-alt1 sisyphus+276382.100.1.1 1624989601 installed <13>Mar 25 05:30:44 rpmi: librav1e-0.6.3-alt1 sisyphus+313168.100.1.1 1673426871 installed <13>Mar 25 05:30:44 rpmi: libavif-0.11.1-alt1 sisyphus+314936.100.1.1 1675934895 installed <13>Mar 25 05:30:44 rpmi: libaspell-0.60.8-alt2 sisyphus+308375.100.1.1 1665751743 installed <13>Mar 25 05:30:44 rpmi: libenchant2-2.3.4-alt1 sisyphus+315486.100.1.1 1676846842 installed <13>Mar 25 05:30:44 rpmi: libICE-1.1.1-alt1 sisyphus+311428.500.1.1 1670577559 installed <13>Mar 25 05:30:44 rpmi: libSM-1.2.4-alt1 sisyphus+312057.200.1.1 1671526918 installed <13>Mar 25 05:30:44 rpmi: libwavpack-5.6.0-alt1 sisyphus+312784.100.1.1 1672495704 installed <13>Mar 25 05:30:44 rpmi: libtag-1.12-alt1 sisyphus+277260.100.1.1 1625423544 installed <13>Mar 25 05:30:44 rpmi: libvisual0.4-0.4.0-alt3 sisyphus+276250.100.1.2 1624927464 installed <13>Mar 25 05:30:44 rpmi: libgraphene-1.10.8-alt1 sisyphus+296855.100.1.1 1647633387 installed <13>Mar 25 05:30:44 rpmi: libcdparanoia-1:10.2-alt6 sisyphus+278521.100.1.1 1626108248 installed <13>Mar 25 05:30:44 rpmi: libwebrtc-0.3-alt2 sisyphus+277616.100.1.1 1625719136 installed <13>Mar 25 05:30:44 rpmi: libvo-amrwbenc-0.1.3-alt1 sisyphus+275410.100.1.2 1624504622 installed <13>Mar 25 05:30:44 rpmi: libvo-aacenc-0.1.3-alt2 sisyphus+285812.100.1.1 1632410892 installed <13>Mar 25 05:30:44 rpmi: libsrtp2-2.5.0-alt1 sisyphus+315000.100.1.1 1676038240 installed <13>Mar 25 05:30:44 rpmi: libsbc-1.2-alt1.1 sisyphus+278210.100.1.1 1626077406 installed <13>Mar 25 05:30:44 rpmi: libopenh264-2.3.1-alt1.1 sisyphus+311295.100.1.1 1670335733 installed <13>Mar 25 05:30:44 rpmi: libtbb-2021.5.0-alt1 sisyphus+294292.60.6.1 1643799529 installed <13>Mar 25 05:30:44 rpmi: libprotobuf32-3.21.12-alt2 sisyphus+315327.100.1.1 1676566898 installed <13>Mar 25 05:30:44 rpmi: libglog-0.5.0-alt1 sisyphus+291409.100.1.1 1638655129 installed <13>Mar 25 05:30:44 rpmi: libmodplug-0.8.9.0-alt1 sisyphus+275375.100.2.2 1624495419 installed <13>Mar 25 05:30:44 rpmi: libyajl-2.1.0-alt2 sisyphus+288162.100.1.1 1635206416 installed <13>Mar 25 05:30:44 rpmi: libkate-0.4.1-alt1.6 sisyphus+282639.100.1.1 1628935992 installed <13>Mar 25 05:30:44 rpmi: usbids-20230120-alt1 sisyphus+313807.100.1.1 1674256178 installed <13>Mar 25 05:30:44 rpmi: gtk+3-themes-incompatible-3.20-alt3 1461944560 installed <13>Mar 25 05:30:44 rpmi: perl-Try-Tiny-0.31-alt1 sisyphus+290597.100.1.1 1637915507 installed <13>Mar 25 05:30:44 rpmi: perl-IO-Socket-IP-0.41-alt1 sisyphus+259012.100.1.2 1601553446 installed <13>Mar 25 05:30:44 rpmi: perl-Compress-Raw-Bzip2-2.204-alt1 sisyphus+314930.100.1.1 1675930902 installed <13>Mar 25 05:30:44 rpmi: perl-IO-Compress-Brotli-2:0.004001-alt3 sisyphus+302124.100.1.1 1655283098 installed <13>Mar 25 05:30:44 rpmi: perl-Clone-0.46-alt1 sisyphus+308850.100.1.3 1666451819 installed <13>Mar 25 05:30:44 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed <13>Mar 25 05:30:44 rpmi: perl-Term-ANSIColor-5.01-alt1 sisyphus+244783.100.1.2 1579747505 installed <13>Mar 25 05:30:44 rpmi: perl-Data-Dump-1.25-alt1 sisyphus+276551.100.1.1 1625126880 installed <13>Mar 25 05:30:44 rpmi: perl-Filter-1.64-alt1 sisyphus+305464.100.1.1 1660815328 installed <13>Mar 25 05:30:44 rpmi: perl-Encode-3.19-alt1 sisyphus+304776.100.1.1 1659623414 installed <13>Mar 25 05:30:44 rpmi: perl-URI-5.17-alt1 sisyphus+310739.100.1.1 1669616836 installed <13>Mar 25 05:30:44 rpmi: perl-IO-Compress-2.204-alt1 sisyphus+315114.100.1.1 1676225908 installed <13>Mar 25 05:30:44 rpmi: perl-Net-HTTP-6.22-alt1 sisyphus+294185.100.1.1 1643275428 installed <13>Mar 25 05:30:44 rpmi: perl-HTML-Parser-3.81-alt1 sisyphus+314462.100.1.1 1675193797 installed <13>Mar 25 05:30:44 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Mar 25 05:30:44 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Mar 25 05:30:44 rpmi: perl-IO-HTML-1.004-alt1 sisyphus+258983.100.1.1 1601542619 installed <13>Mar 25 05:30:44 rpmi: perl-HTTP-Message-6.44-alt1 sisyphus+309106.100.1.1 1666913573 installed <13>Mar 25 05:30:44 rpmi: perl-HTTP-Cookies-6.10-alt1 sisyphus+264349.100.1.1 1609891183 installed <13>Mar 25 05:30:44 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Mar 25 05:30:44 rpmi: perl-libwww-6.68-alt1 sisyphus+316051.100.1.1 1677673156 installed <13>Mar 25 05:30:44 rpmi: perl-XML-LibXML-2.0208-alt2 sisyphus+308580.100.1.1 1666065521 installed <13>Mar 25 05:30:44 rpmi: perl-XML-SAX-1.02-alt1 sisyphus+232322.100.1.1 1560758406 installed <13>Mar 25 05:30:44 rpmi: perl-XML-Simple-2.25-alt2 sisyphus+257498.100.1.1 1599324034 installed <13>Mar 25 05:30:44 rpmi: icon-naming-utils-0.8.90-alt1 sisyphus+276851.100.1.1 1625243947 installed <13>Mar 25 05:30:44 rpmi: icon-theme-adwaita-44.0-alt1 sisyphus+317076.600.1.1 1679344664 installed <13>Mar 25 05:30:44 rpmi: libfreeaptx-0.1.1-alt1 sisyphus+282022.100.1.1 1628182684 installed <13>Mar 25 05:30:44 rpmi: libasyncns-0.8-alt2.qa1 sisyphus+275091.100.1.1 1624402242 installed <13>Mar 25 05:30:44 rpmi: liblash-1:0.5.4-alt1_49 sisyphus+312428.100.1.1 1671879545 installed <13>Mar 25 05:30:44 rpmi: libfaad2-2.10.0-alt1 sisyphus+279072.100.1.1 1626374962 installed <13>Mar 25 05:30:44 rpmi: libdca0-0.0.5-alt4.qa1 sisyphus+275349.100.1.2 1624487409 installed <13>Mar 25 05:30:44 rpmi: libgme-0.6.3-alt2 sisyphus+293048.100.1.1 1641452309 installed <13>Mar 25 05:30:44 rpmi: libudfread-1.1.2-alt2 sisyphus+286325.100.1.1 1633263314 installed <13>Mar 25 05:30:44 rpmi: libbluray-1.3.4-alt1 sisyphus+310888.100.1.1 1669800491 installed <13>Mar 25 05:30:44 rpmi: libfftw3-common-3.3.8-alt2 sisyphus+278100.1300.1.1 1626057222 installed <13>Mar 25 05:30:44 rpmi: libfftw3-3.3.8-alt2 sisyphus+278100.1300.1.1 1626057647 installed <13>Mar 25 05:30:44 rpmi: libchromaprint1-1.5.0-alt2 sisyphus+286097.100.1.1 1632900907 installed <13>Mar 25 05:30:44 rpmi: librubberband-3.1.2-alt1 sisyphus+311187.100.1.1 1670229535 installed <13>Mar 25 05:30:44 rpmi: vulkan-filesystem-1.3.243-alt1 sisyphus+317339.500.2.1 1679601909 installed <13>Mar 25 05:30:44 rpmi: libvulkan1-1.3.243-alt1 sisyphus+317339.500.2.1 1679601913 installed <13>Mar 25 05:30:44 rpmi: libsoxr-0.1.2-alt4 sisyphus+275399.100.1.2 1624502555 installed <13>Mar 25 05:30:44 rpmi: libxvid-1.3.7-alt1 sisyphus+292833.100.1.1 1640949611 installed <13>Mar 25 05:30:44 rpmi: libnuma-2.0.14-alt2 sisyphus+278485.100.1.1 1626104243 installed <13>Mar 25 05:30:44 rpmi: libx265-199-3.5-alt1.1 sisyphus+277560.100.1.1 1625696944 installed <13>Mar 25 05:30:44 rpmi: libx264-164-alt1 sisyphus+310969.100.5.1 1669990176 installed <13>Mar 25 05:30:44 rpmi: libxshmfence-1.3.2-alt1 sisyphus+311428.400.1.1 1670577529 installed <13>Mar 25 05:30:44 rpmi: libpciaccess-1:0.17-alt1 sisyphus+308663.300.1.1 1666168262 installed <13>Mar 25 05:30:44 rpmi: libdrm-1:2.4.115-alt1 sisyphus+315873.100.1.1 1677481746 installed <13>Mar 25 05:30:44 rpmi: libgbm-4:22.3.7-alt1 sisyphus+316406.100.1.1 1678343314 installed <13>Mar 25 05:30:44 rpmi: libsnappy-1.1.7-alt1 sisyphus+276400.100.1.2 1625016400 installed <13>Mar 25 05:30:44 rpmi: libdatrie-0.2.13-alt1_2 sisyphus+285649.100.1.1 1632260805 installed <13>Mar 25 05:30:44 rpmi: libthai-0.1.29-alt1_1 sisyphus+292947.100.1.1 1641111918 installed <13>Mar 25 05:30:44 rpmi: libjbig-2.1-alt1 sisyphus+276068.100.1.1 1624815406 installed <13>Mar 25 05:30:44 rpmi: libdeflate-1.14-alt1 sisyphus+306557.100.1.1 1662905319 installed <13>Mar 25 05:30:44 rpmi: libtiff5-4.4.0-alt3 sisyphus+316986.100.1.1 1679241635 installed <13>Mar 25 05:30:44 rpmi: libgdk-pixbuf-locales-2.42.10-alt1 sisyphus+308991.100.1.1 1666721198 installed <13>Mar 25 05:30:44 rpmi: libopencore-amrwb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032485 installed <13>Mar 25 05:30:44 rpmi: libopencore-amrnb0-0.1.6-alt1 sisyphus+307923.100.1.1 1665032485 installed <13>Mar 25 05:30:44 rpmi: libcodec2-1.0.5-alt1 sisyphus+307919.100.1.1 1665032101 installed <13>Mar 25 05:30:44 rpmi: libproxy-0.4.18-alt1 sisyphus+307602.100.1.1 1664480605 installed <13>Mar 25 05:30:44 rpmi: libjson-c5-0.15-alt1.1 sisyphus+279547.100.1.2 1626594467 installed <13>Mar 25 05:30:44 rpmi: libCharLS2-2.0.0-alt1_3 sisyphus+276376.100.1.1 1624988381 installed <13>Mar 25 05:30:44 rpmi: gcc-c++-common-1.4.27-alt1 sisyphus+278099.1300.1.1 1626028636 installed <13>Mar 25 05:30:45 rpmi: libstdc++12-devel-12.2.1-alt1 sisyphus+317240.100.2.1 1679582610 installed <13>Mar 25 05:30:45 rpmi: gcc12-c++-12.2.1-alt1 sisyphus+317240.100.2.1 1679582610 installed <13>Mar 25 05:30:45 rpmi: libpixman-3:0.42.2-alt1 sisyphus+309549.100.1.1 1667649379 installed <13>Mar 25 05:30:45 rpmi: libmpdec3-2.5.1-alt3 sisyphus+314490.500.5.1 1675432033 installed <13>Mar 25 05:30:45 rpmi: libdevmapper-1.02.193-alt1 sisyphus+317421.100.1.1 1679684422 installed <13>Mar 25 05:30:45 rpmi: mount-2.38.1-alt1 sisyphus+308470.100.1.1 1665845352 installed <13>Mar 25 05:30:45 rpmi: losetup-2.38.1-alt1 sisyphus+308470.100.1.1 1665845352 installed <13>Mar 25 05:30:45 rpmi: lsblk-2.38.1-alt1 sisyphus+308470.100.1.1 1665845352 installed <13>Mar 25 05:30:45 rpmi: desktop-file-utils-0.26-alt3 sisyphus+297027.100.1.1 1648023316 installed <13>Mar 25 05:30:45 rpmi: shared-mime-info-2.2-alt1 sisyphus+297388.100.1.1 1648466617 installed <13>Mar 25 05:30:46 rpmi: gsettings-desktop-schemas-data-44.0-alt1 sisyphus+317076.300.1.1 1679344430 installed <13>Mar 25 05:30:46 rpmi: libgio-2.76.1-alt1 sisyphus+317249.100.1.1 1679515571 installed <13>Mar 25 05:30:46 rpmi: gsettings-desktop-schemas-44.0-alt1 sisyphus+317076.300.1.1 1679344454 installed <13>Mar 25 05:30:46 rpmi: libgstreamer1.0-1.22.1-alt1 sisyphus+316236.100.1.1 1677974960 installed <13>Mar 25 05:30:46 rpmi: libgdk-pixbuf-2.42.10-alt1 sisyphus+308991.100.1.1 1666721201 installed <13>Mar 25 05:30:46 rpmi: gobject-introspection-1.76.1-alt1 sisyphus+317264.100.1.1 1679555251 installed <13>Mar 25 05:30:46 rpmi: libgstreamer1.0-gir-1.22.1-alt1 sisyphus+316236.100.1.1 1677974960 installed <13>Mar 25 05:30:46 rpmi: gstreamer1.0-1.22.1-alt1 sisyphus+316236.100.1.1 1677974960 installed <13>Mar 25 05:30:46 rpmi: gtk4-update-icon-cache-4.10.1-alt1 sisyphus+317076.700.1.1 1679344992 installed <13>Mar 25 05:30:46 rpmi: libnotify-0.8.2-alt1 sisyphus+316677.100.1.1 1678691820 installed <13>Mar 25 05:30:46 rpmi: libdconf-0.40.0-alt1 sisyphus+279299.100.1.2 1626495975 installed <13>Mar 25 05:30:46 rpmi: libjson-glib-1.6.6-alt1 sisyphus+299768.200.2.1 1652264095 installed <13>Mar 25 05:30:46 rpmi: libgusb-0.4.5-alt1 sisyphus+314918.100.1.1 1675925446 installed <13>Mar 25 05:30:46 rpmi: libcolord-1.4.6-alt1 sisyphus+296000.100.1.1 1646050423 installed <13>Mar 25 05:30:46 rpmi: libmanette-0.2.6-alt1 sisyphus+278498.100.1.3 1626233263 installed <13>Mar 25 05:30:46 rpmi: libsecret-0.20.5-alt1 sisyphus+295994.200.1.1 1646042354 installed <13>Mar 25 05:30:46 rpmi: xdg-dbus-proxy-0.1.4-alt1 sisyphus+299818.100.1.1 1652344956 installed <13>Mar 25 05:30:46 rpmi: libwpebackend-fdo-1.14.2-alt1 sisyphus+317208.100.1.1 1679490338 installed <13>Mar 25 05:30:46 rpmi: systemd-modules-common-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed <13>Mar 25 05:30:46 rpmi: systemd-sysctl-common-1:252.7-alt1 sisyphus+316321.100.1.1 1678130459 installed <13>Mar 25 05:30:46 rpmi: systemd-tmpfiles-common-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed <13>Mar 25 05:30:46 rpmi: systemd-utils-filetriggers-1:252.7-alt1 sisyphus+316321.100.1.1 1678130436 installed <13>Mar 25 05:30:46 rpmi: rpm-macros-cmake-3.23.2-alt1.2 sisyphus+308755.100.1.1 1666345623 installed <13>Mar 25 05:30:46 rpmi: cmake-modules-3.23.2-alt1.2 sisyphus+308755.100.1.1 1666345612 installed <13>Mar 25 05:30:46 rpmi: libuv-1.44.2-alt1 sisyphus+303845.100.1.1 1658053887 installed <13>Mar 25 05:30:46 rpmi: librhash-1.3.5-alt3 sisyphus+286141.40.2.1 1632982456 installed <13>Mar 25 05:30:46 rpmi: libjsoncpp24-1.9.4-alt2 sisyphus+286441.100.1.1 1633444234 installed <13>Mar 25 05:30:46 rpmi: publicsuffix-list-dafsa-20221208-alt1 sisyphus+313597.100.1.1 1673961759 installed <13>Mar 25 05:30:46 rpmi: libpsl-0.21.2-alt1 sisyphus+312536.100.1.1 1672131180 installed <13>Mar 25 05:30:46 rpmi: libnghttp3-0.9.0-alt1 sisyphus+317166.100.1.1 1679409333 installed <13>Mar 25 05:30:46 rpmi: libnghttp2-1.52.0-alt1 sisyphus+315262.100.1.1 1676446375 installed <13>Mar 25 05:30:46 rpmi: openldap-common-2.6.4-alt1 sisyphus+317419.100.1.1 1679684487 installed <13>Mar 25 05:30:46 rpmi: libntlm-1.5-alt1 sisyphus+278100.3300.1.1 1626059663 installed <13>Mar 25 05:30:46 rpmi: libidn-1.37-alt2 sisyphus+300849.100.1.1 1653769693 installed <13>Mar 25 05:30:46 rpmi: libverto-0.3.2-alt1_1 sisyphus+279289.100.1.3 1626493872 installed <13>Mar 25 05:30:46 rpmi: liblmdb-0.9.29-alt1.1 sisyphus+306630.100.1.1 1663072361 installed <13>Mar 25 05:30:46 rpmi: libkeyutils-1.6.3-alt1 sisyphus+266061.100.1.1 1612919567 installed <13>Mar 25 05:30:46 rpmi: libcom_err-1.46.4.0.5.4cda-alt1 sisyphus+283826.100.1.1 1629975361 installed <13>Mar 25 05:30:46 rpmi: bubblewrap-0.8.0-alt1 sisyphus+315970.100.1.1 1677573593 installed <13>Mar 25 05:30:46 rpmi: libboost_context1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_fiber1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_stacktrace1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_nowide1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_test1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_serialization1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_random1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_iostreams1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_json1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_regex1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_graph1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_date_time1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:46 rpmi: libboost_container1.80.0-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:47 rpmi: boost-devel-headers-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666588748 installed <13>Mar 25 05:30:47 rpmi: boost-devel-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:47 rpmi: libX11-locales-3:1.8.4-alt1 sisyphus+314722.100.1.1 1675664300 installed <13>Mar 25 05:30:47 rpmi: libXdmcp-1.1.4-alt1 sisyphus+311188.1000.1.1 1670233860 installed <13>Mar 25 05:30:47 rpmi: libxcb-1.15-alt1 sisyphus+299436.300.1.1 1651655490 installed <13>Mar 25 05:30:47 rpmi: libX11-3:1.8.4-alt1 sisyphus+314722.100.1.1 1675664302 installed <13>Mar 25 05:30:47 rpmi: libXext-1.3.5-alt1 sisyphus+309285.100.1.1 1667212413 installed <13>Mar 25 05:30:47 rpmi: libXrender-0.9.11-alt1 sisyphus+308841.100.1.1 1666436131 installed <13>Mar 25 05:30:47 rpmi: libcairo-1:1.16.0-alt2 sisyphus+312186.100.1.1 1671693945 installed <13>Mar 25 05:30:47 rpmi: libXfixes-6.0.0-alt1 sisyphus+284644.300.1.1 1630910333 installed <13>Mar 25 05:30:47 rpmi: libcairo-gobject-1:1.16.0-alt2 sisyphus+312186.100.1.1 1671693945 installed <13>Mar 25 05:30:47 rpmi: libXi-1.8-alt1 sisyphus+285490.200.1.1 1632124180 installed <13>Mar 25 05:30:47 rpmi: libXdamage-1.1.6-alt1 sisyphus+311188.300.1.1 1670233713 installed <13>Mar 25 05:30:47 rpmi: libXrandr-1.5.3-alt1 sisyphus+310375.100.1.1 1669010698 installed <13>Mar 25 05:30:47 rpmi: libXxf86vm-1.1.5-alt1 sisyphus+308663.1400.1.1 1666168534 installed <13>Mar 25 05:30:47 rpmi: libGLX-mesa-4:22.3.7-alt1 sisyphus+316406.100.1.1 1678343314 installed <13>Mar 25 05:30:47 rpmi: libGLX-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906761 installed <13>Mar 25 05:30:47 rpmi: libGL-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906761 installed <13>Mar 25 05:30:47 rpmi: libva-2.17.0-alt1 sisyphus+313589.100.1.1 1674042576 installed <13>Mar 25 05:30:47 rpmi: libXv-1.0.12-alt1 sisyphus+311188.600.1.1 1670233801 installed <13>Mar 25 05:30:47 rpmi: libzvbi-0.2.35-alt2 sisyphus+275416.100.1.3 1624507130 installed <13>Mar 25 05:30:47 rpmi: libXcomposite-0.4.6-alt1 sisyphus+311188.200.1.1 1670233684 installed <13>Mar 25 05:30:48 rpmi: libxcb-devel-1.15-alt1 sisyphus+299436.300.1.1 1651655490 installed <13>Mar 25 05:30:48 rpmi: libX11-devel-3:1.8.4-alt1 sisyphus+314722.100.1.1 1675664302 installed <13>Mar 25 05:30:48 rpmi: libXrender-devel-0.9.11-alt1 sisyphus+308841.100.1.1 1666436131 installed <13>Mar 25 05:30:48 rpmi: libXext-devel-1.3.5-alt1 sisyphus+309285.100.1.1 1667212413 installed <13>Mar 25 05:30:48 rpmi: libEGL-mesa-4:22.3.7-alt1 sisyphus+316406.100.1.1 1678343314 installed <13>Mar 25 05:30:48 rpmi: libEGL-7:1.6.0-alt1 sisyphus+310974.100.1.1 1669906761 installed <13>Mar 25 05:30:49 rpmi: libgst-plugins1.0-1.22.1-alt1 sisyphus+316236.200.1.1 1677975070 installed <13>Mar 25 05:30:49 rpmi: libgst-plugins1.0-gir-1.22.1-alt1 sisyphus+316236.200.1.1 1677975070 installed <13>Mar 25 05:30:49 rpmi: libXcursor-1.2.1-alt1 sisyphus+297765.200.1.1 1649053934 installed <13>Mar 25 05:30:49 rpmi: libharfbuzz-cairo-7.0.1-alt1 sisyphus+315589.100.1.1 1676975795 installed <13>Mar 25 05:30:49 rpmi: libXft-2.3.7-alt1 sisyphus+310164.100.1.1 1668680609 installed <13>Mar 25 05:30:49 rpmi: libpango-1.50.14-alt1 sisyphus+316117.100.1.1 1677780554 installed <13>Mar 25 05:30:49 rpmi: librsvg-1:2.56.0-alt1 sisyphus+317076.500.1.1 1679344664 installed <13>Mar 25 05:30:49 rpmi: libvdpau-1:1.5-alt1 sisyphus+298034.100.1.1 1649336827 installed <13>Mar 25 05:30:49 rpmi: libavutil56-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:49 rpmi: libswscale5-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:49 rpmi: libswresample3-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:49 rpmi: libavcodec58-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:49 rpmi: libpostproc55-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:49 rpmi: libavresample4-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:49 rpmi: libXinerama-1.1.5-alt1 sisyphus+309287.100.1.1 1667213209 installed <13>Mar 25 05:30:49 rpmi: liblz4-1:1.9.4-alt1 sisyphus+309416.100.1.1 1667413000 installed <13>Mar 25 05:30:49 rpmi: libsystemd-1:252.7-alt1 sisyphus+316321.100.1.1 1678130459 installed <13>Mar 25 05:30:49 rpmi: libdbus-1.14.6-alt1 sisyphus+315497.100.1.1 1676874448 installed <13>Mar 25 05:30:49 rpmi: libpulseaudio-16.1-alt1 sisyphus+302689.200.2.1 1656326115 installed <13>Mar 25 05:30:49 rpmi: libat-spi2-core-2.48.0-alt1 sisyphus+317076.400.1.1 1679344534 installed <13>Mar 25 05:30:49 rpmi: at-spi2-atk-2.48.0-alt1 sisyphus+317076.400.1.1 1679344534 installed <13>Mar 25 05:30:49 rpmi: libavahi-0.8-alt2 sisyphus+279391.100.1.2 1626530700 installed <13>Mar 25 05:30:49 rpmi: libzbar-0.23.92-alt3 sisyphus+291245.25400.54.1 1643306733 installed <13>Mar 25 05:30:49 rpmi: libpolkit-0.120-alt1.qa2 sisyphus+296007.100.1.1 1646053433 installed <13>Mar 25 05:30:49 rpmi: libjavascriptcoregtk4-2.40.0-alt1 sisyphus+317126.100.1.1 1679402679 installed <13>Mar 25 05:30:49 rpmi: rpm-macros-alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Mar 25 05:30:49 rpmi: alternatives-0.5.2-alt2 sisyphus+315270.200.2.1 1676457367 installed <13>Mar 25 05:30:49 rpmi: ca-certificates-2022.12.14-alt1 sisyphus+311754.200.1.1 1671046143 installed <13>Mar 25 05:30:49 rpmi: ca-trust-0.1.4-alt1 sisyphus+308690.100.1.1 1666182992 installed <13>Mar 25 05:30:49 rpmi: p11-kit-trust-0.24.1-alt1 sisyphus+293720.100.1.1 1642535281 installed <13>Mar 25 05:30:50 rpmi: libcrypto1.1-1.1.1t-alt1 sisyphus+314824.100.2.2 1675799073 installed <13>Mar 25 05:30:50 rpmi: libssl1.1-1.1.1t-alt1 sisyphus+314824.100.2.2 1675799073 installed <13>Mar 25 05:30:50 rpmi: python3-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363746 installed <13>Mar 25 05:30:50 rpmi: python3-base-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363746 installed <86>Mar 25 05:30:50 groupadd[2573680]: group added to /etc/group: name=_keytab, GID=499 <86>Mar 25 05:30:50 groupadd[2573680]: group added to /etc/gshadow: name=_keytab <86>Mar 25 05:30:50 groupadd[2573680]: new group: name=_keytab, GID=499 <13>Mar 25 05:30:50 rpmi: libkrb5-1.20.1-alt1 sisyphus+306946.1000.5.2 1677793939 installed <13>Mar 25 05:30:50 rpmi: libkmod-30-alt1 sisyphus+307195.200.2.1 1663842346 installed <13>Mar 25 05:30:50 rpmi: systemd-utils-standalone-1:252.7-alt1 sisyphus+316321.100.1.1 1678130459 installed <13>Mar 25 05:30:50 rpmi: dbus-tools-1.14.6-alt1 sisyphus+315497.100.1.1 1676874448 installed <86>Mar 25 05:30:50 groupadd[2574047]: group added to /etc/group: name=messagebus, GID=498 <86>Mar 25 05:30:50 groupadd[2574047]: group added to /etc/gshadow: name=messagebus <86>Mar 25 05:30:50 groupadd[2574047]: new group: name=messagebus, GID=498 <86>Mar 25 05:30:50 useradd[2574057]: new user: name=messagebus, UID=499, GID=498, home=/run/dbus, shell=/dev/null <13>Mar 25 05:30:50 rpmi: dbus-1.14.6-alt1 sisyphus+315497.100.1.1 1676874448 installed <13>Mar 25 05:30:50 rpmi: dconf-0.40.0-alt1 sisyphus+279299.100.1.2 1626495975 installed <13>Mar 25 05:30:50 rpmi: libgtk+3-schemas-3.24.37-alt1 sisyphus+316153.100.1.1 1677835525 installed <13>Mar 25 05:30:50 rpmi: kmod-30-alt1 sisyphus+307195.200.2.1 1663842346 installed <13>Mar 25 05:30:50 rpmi: dmsetup-1.02.193-alt1 sisyphus+317421.100.1.1 1679684422 installed <86>Mar 25 05:30:50 groupadd[2574183]: group added to /etc/group: name=tape, GID=497 <86>Mar 25 05:30:50 groupadd[2574183]: group added to /etc/gshadow: name=tape <86>Mar 25 05:30:50 groupadd[2574183]: new group: name=tape, GID=497 <86>Mar 25 05:30:50 groupadd[2574188]: group added to /etc/group: name=dialout, GID=496 <86>Mar 25 05:30:50 groupadd[2574188]: group added to /etc/gshadow: name=dialout <86>Mar 25 05:30:50 groupadd[2574188]: new group: name=dialout, GID=496 <86>Mar 25 05:30:50 groupadd[2574192]: group added to /etc/group: name=input, GID=495 <86>Mar 25 05:30:50 groupadd[2574192]: group added to /etc/gshadow: name=input <86>Mar 25 05:30:50 groupadd[2574192]: new group: name=input, GID=495 <86>Mar 25 05:30:50 groupadd[2574196]: group added to /etc/group: name=video, GID=494 <86>Mar 25 05:30:50 groupadd[2574196]: group added to /etc/gshadow: name=video <86>Mar 25 05:30:50 groupadd[2574196]: new group: name=video, GID=494 <86>Mar 25 05:30:50 groupadd[2574200]: group added to /etc/group: name=render, GID=493 <86>Mar 25 05:30:50 groupadd[2574200]: group added to /etc/gshadow: name=render <86>Mar 25 05:30:50 groupadd[2574200]: new group: name=render, GID=493 <86>Mar 25 05:30:50 groupadd[2574204]: group added to /etc/group: name=sgx, GID=492 <86>Mar 25 05:30:50 groupadd[2574204]: group added to /etc/gshadow: name=sgx <86>Mar 25 05:30:50 groupadd[2574204]: new group: name=sgx, GID=492 <13>Mar 25 05:30:51 rpmi: udev-1:252.7-alt1 sisyphus+316321.100.1.1 1678130459 installed <86>Mar 25 05:30:51 groupadd[2574760]: group added to /etc/group: name=colord, GID=491 <86>Mar 25 05:30:51 groupadd[2574760]: group added to /etc/gshadow: name=colord <86>Mar 25 05:30:51 groupadd[2574760]: new group: name=colord, GID=491 <86>Mar 25 05:30:51 useradd[2574768]: new user: name=colord, UID=498, GID=491, home=/var/colord, shell=/dev/null <13>Mar 25 05:30:51 rpmi: colord-1.4.6-alt1 sisyphus+296000.100.1.1 1646050423 installed <13>Mar 25 05:30:51 rpmi: libgsasl-1.8.0-alt3 sisyphus+275307.100.1.2 1624478553 installed <86>Mar 25 05:30:51 groupadd[2574864]: group added to /etc/group: name=sasl, GID=490 <86>Mar 25 05:30:51 groupadd[2574864]: group added to /etc/gshadow: name=sasl <86>Mar 25 05:30:51 groupadd[2574864]: new group: name=sasl, GID=490 <13>Mar 25 05:30:51 rpmi: libsasl2-3-2.1.27-alt2.2 sisyphus+306372.1000.8.1 1663097332 installed <13>Mar 25 05:30:51 rpmi: libldap2-2.6.4-alt1 sisyphus+317419.100.1.1 1679684507 installed <13>Mar 25 05:30:51 rpmi: libssh-0.9.6-alt1 sisyphus+284392.100.1.1 1630573058 installed <13>Mar 25 05:30:51 rpmi: libneon-0.32.2-alt1 sisyphus+302406.100.1.1 1655812503 installed <13>Mar 25 05:30:51 rpmi: glib2-devel-2.76.1-alt1 sisyphus+317249.100.1.1 1679515571 installed <13>Mar 25 05:30:51 rpmi: libcairo-devel-1:1.16.0-alt2 sisyphus+312186.100.1.1 1671693945 installed <13>Mar 25 05:30:51 rpmi: fontconfig-devel-2.14.2-alt5 sisyphus+317300.100.1.1 1679578089 installed <13>Mar 25 05:30:51 rpmi: libfreetype-devel-2.13.0-alt1 sisyphus+315092.100.1.1 1676198645 installed <13>Mar 25 05:30:51 rpmi: libharfbuzz-devel-7.0.1-alt1 sisyphus+315589.100.1.1 1676975795 installed <13>Mar 25 05:30:51 rpmi: libpython3-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363746 installed <13>Mar 25 05:30:51 rpmi: python3-module-pkg_resources-1:67.4.0-alt1 sisyphus+316154.100.2.1 1678108061 installed <13>Mar 25 05:30:51 rpmi: tests-for-installed-python3-pkgs-0.1.21-alt1 sisyphus+313305.100.2.1 1674203926 installed <13>Mar 25 05:30:51 rpmi: rpm-build-python3-0.1.21-alt1 sisyphus+313305.100.2.1 1674203926 installed <13>Mar 25 05:30:52 rpmi: python3-dev-3.10.8-alt1.1 sisyphus+311926.100.2.1 1671363746 installed <13>Mar 25 05:30:52 rpmi: librabbitmq-c4-0.13.0-alt1 sisyphus+314793.100.2.1 1678110227 installed <13>Mar 25 05:30:52 rpmi: libavformat58-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:52 rpmi: libavfilter7-2:4.4.3-alt2 sisyphus+314308.100.1.1 1674910686 installed <13>Mar 25 05:30:52 rpmi: gst-libav-1.22.1-alt1 sisyphus+316236.700.1.1 1677975444 installed <13>Mar 25 05:30:52 rpmi: libcups-2.4.2-alt1 sisyphus+304732.100.2.1 1659624899 installed <13>Mar 25 05:30:52 rpmi: libgtk+3-3.24.37-alt1 sisyphus+316153.100.1.1 1677835558 installed <13>Mar 25 05:30:53 rpmi: libwxGTK3.0-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:53 rpmi: libwxGTK3.0-gl-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:53 rpmi: libwxGTK3.0-media-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:53 rpmi: libshout2-2.4.6-alt2 sisyphus+303674.1400.6.1 1657969765 installed <13>Mar 25 05:30:53 rpmi: gst-plugins-good1.0-1.22.1-alt1 sisyphus+316236.300.1.1 1677975186 installed <13>Mar 25 05:30:53 rpmi: libarchive13-3.6.1-alt2 sisyphus+311213.100.1.1 1670244624 installed <13>Mar 25 05:30:53 rpmi: libssh2-1.10.0-alt1 sisyphus+289470.100.1.1 1636752294 installed <13>Mar 25 05:30:53 rpmi: libcurl-8.0.1-alt2 sisyphus+317180.500.4.1 1679494063 installed <13>Mar 25 05:30:53 rpmi: libraptor2-2.0.15-alt1 sisyphus+275177.100.1.2 1624430744 installed <13>Mar 25 05:30:53 rpmi: liblrdf-0.6.1-alt1 sisyphus+278205.100.1.1 1626077043 installed <13>Mar 25 05:30:53 rpmi: gdcm-3.0.12-alt2 sisyphus+300466.100.1.1 1653304805 installed <13>Mar 25 05:30:54 rpmi: libopencv4.5-1:4.5.5-alt2 sisyphus+312524.1440.15.2 1676178951 installed <13>Mar 25 05:30:54 rpmi: glib-networking-2.76.0-alt1 sisyphus+317076.1100.1.1 1679345110 installed <13>Mar 25 05:30:54 rpmi: libsoup-2.74.3-alt1 sisyphus+308247.100.1.1 1665521885 installed <13>Mar 25 05:30:54 rpmi: libgssdp1.2-1.4.0.1-alt1 sisyphus+285462.100.1.1 1632035584 installed <13>Mar 25 05:30:54 rpmi: libgupnp1.2-1.4.3-alt1 sisyphus+293449.100.1.1 1642101427 installed <13>Mar 25 05:30:54 rpmi: libgupnp-igd-1.2.0-alt1.2 sisyphus+285462.600.1.1 1632035951 installed <13>Mar 25 05:30:54 rpmi: libnice-0.1.21-alt1 sisyphus+313049.100.1.1 1673271413 installed <13>Mar 25 05:30:54 rpmi: alsa-ucm-conf-1.2.8-alt5 sisyphus+316098.200.2.1 1677756308 installed <13>Mar 25 05:30:54 rpmi: alsa-topology-conf-1.2.5.1-alt1 sisyphus+274777.100.1.1 1624089141 installed <13>Mar 25 05:30:54 rpmi: libalsa-1:1.2.8-alt1 sisyphus+310349.200.1.1 1668964322 installed <13>Mar 25 05:30:54 rpmi: libfluidsynth-2.3.1-alt1 sisyphus+312631.100.1.1 1672335478 installed <13>Mar 25 05:30:54 rpmi: libSDL-1.2.14-alt10 sisyphus+284852.100.1.1 1631107844 installed <13>Mar 25 05:30:54 rpmi: libmjpegtools2.1-2.2.1-alt1 sisyphus+286352.100.1.1 1633334595 installed <13>Mar 25 05:30:54 rpmi: gst-plugins-bad1.0-1.22.1-alt1 sisyphus+316236.400.1.1 1677975324 installed <13>Mar 25 05:30:54 rpmi: gst-plugins-base1.0-1.22.1-alt1 sisyphus+316236.200.1.1 1677975070 installed <13>Mar 25 05:30:55 rpmi: libwebkit2gtk-2.40.0-alt1 sisyphus+317126.100.1.1 1679402679 installed <13>Mar 25 05:30:55 rpmi: libwxGTK3.0-webview-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:55 rpmi: libwxGTK3.0-devel-3.0.5.1-alt3 sisyphus+286718.140.17.1 1634669922 installed <13>Mar 25 05:30:56 rpmi: cmake-3.23.2-alt1.2 sisyphus+308755.100.1.1 1666345623 installed <13>Mar 25 05:30:56 rpmi: python3-module-setuptools-1:67.4.0-alt1 sisyphus+316154.100.2.1 1678108061 installed <13>Mar 25 05:30:56 rpmi: boost-filesystem-devel-1:1.80.0-alt1 sisyphus+308894.400.1.1 1666589137 installed <13>Mar 25 05:30:56 rpmi: gcc-c++-12-alt1 sisyphus+300988.300.1.1 1654033914 installed <13>Mar 25 05:30:56 rpmi: swig-1:4.0.2-alt4 sisyphus+302321.100.1.1 1655604542 installed <13>Mar 25 05:30:56 rpmi: rapidjson-1.1.0-alt3 sisyphus+314318.100.1.1 1674923351 installed <13>Mar 25 05:30:56 rpmi: libxml2-devel-1:2.10.3-alt1 sisyphus+308392.100.3.1 1666013214 installed <13>Mar 25 05:30:56 rpmi: eigen3-3.4.0-alt2.1 sisyphus+293366.100.1.1 1641993638 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/openbabel-3.1.1-alt2.nosrc.rpm (w1.gzdio) Installing openbabel-3.1.1-alt2.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.20740 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-3.1.1 + echo 'Source #0 (openbabel-3.1.1.tar):' Source #0 (openbabel-3.1.1.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/openbabel-3.1.1.tar + cd openbabel-3.1.1 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (openbabel-3.1.1-alt2.patch):' Patch #0 (openbabel-3.1.1-alt2.patch): + /usr/bin/patch -p1 patching file .gear/rules patching file .gear/tags/2806ab0ef7445a427f7cc4706455d7988262adcc patching file .gear/tags/list patching file .github/config.yml patching file .github/workflows/build_cmake.yml patching file .github/workflows/misspell-fixer.yml patching file CMakeLists.txt patching file OpenBabel3Config.cmake.in patching file OpenBabel3ConfigVersion.cmake.in patching file cmake/modules/Findcoordgen.cmake patching file data/CMakeLists.txt patching file data/atomtyp.h patching file data/bondtyp.h patching file data/genheaders.sh patching file data/logp.txt patching file data/phmodeldata.h patching file data/resdata.h patching file data/splash.png patching file data/torlib.h patching file data/types.h patching file doc/examples/obconformersearch_default.cpp patching file doc/images/SPshapes.png patching file doc/images/cistrans.png patching file doc/images/energyconformerscore.png patching file doc/images/getcisref.png patching file doc/images/gettransref.png patching file doc/images/rmsdconformerscore.png patching file doc/images/spectrophore_cage.png patching file doc/images/squareplanar.png patching file doc/images/tetrahedral.png patching file doc/images/tetranonplanar.png patching file doc/images/tetraplanar.png patching file doc/splash.png patching file include/openbabel/conformersearch.h patching file include/openbabel/forcefield.h patching file include/openbabel/generic.h patching file include/openbabel/mol.h patching file include/openbabel/residue.h patching file include/openbabel/rotor.h patching file include/openbabel/spectrophore.h patching file include/openbabel/stereo/stereo.h patching file include/openbabel/stereo/tetraplanar.h patching file include/openbabel/typer.h patching file openbabel.spec patching file openbabel.watch patching file scripts/CMakeLists.txt patching file scripts/openbabel-R.i patching file scripts/openbabel-csharp.i patching file scripts/openbabel-java.i patching file scripts/openbabel-mono.i patching file scripts/openbabel-perl.i patching file scripts/openbabel-php.i patching file scripts/openbabel-python.i patching file scripts/openbabel-ruby.i patching file scripts/python/openbabel/pybel.py patching file scripts/python/setup.py patching file src/CMakeLists.txt patching file src/conformersearch.cpp patching file src/data.cpp patching file src/doxygen_pages.cpp patching file src/fingerprints/finger3.cpp patching file src/forcefields/forcefielduff.cpp patching file src/formats/MCDLformat.cpp patching file src/formats/cifformat.cpp patching file src/formats/copyformat.cpp patching file src/formats/fastsearchformat.cpp patching file src/formats/fingerprintformat.cpp patching file src/formats/gaussformat.cpp patching file src/formats/getinchi.cpp patching file src/formats/pngformat.cpp patching file src/formats/smilesformat.cpp patching file src/formats/svgformat.cpp patching file src/formats/textformat.cpp patching file src/formats/xtcformat.cpp patching file src/formats/yasaraformat.cpp patching file src/kekulize.cpp patching file src/math/spacegroup.cpp patching file src/mcdlutil.cpp patching file src/mol.cpp patching file src/obiter.cpp patching file src/obmolecformat.cpp patching file src/ops/conformer.cpp patching file src/parsmart.cpp patching file src/residue.cpp patching file src/spectrophore.cpp patching file src/tautomer.cpp patching file src/typer.cpp patching file test/CMakeLists.txt patching file test/cifspacegrouptest.cpp patching file test/files/alias.png patching file test/files/aromatics.png patching file test/fuzz/fuzz_obconversion.cpp patching file test/iterators.cpp patching file test/residue.cpp patching file test/smartstest.cpp patching file test/testbindings.py patching file test/testdistgeom.py patching file tools/obrms.cpp patching file tools/obthermo.cpp + sed -i 's/dist\(-packages\)/site\1/' scripts/CMakeLists.txt + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.65813 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-3.1.1 + mkdir -p i586-alt-linux + cmake -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_DESTINATION=lib -DLIB_SUFFIX= -S . -B i586-alt-linux -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DBUILD_GUI:BOOL=ON -DRUN_SWIG=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -- The C compiler identification is GNU 12.2.1 -- The CXX compiler identification is GNU 12.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found LibXml2: /usr/lib/libxml2.so (found version "2.10.3") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.13") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.0;-lwx_gtk3u_core-3.0;-lwx_gtk3u_adv-3.0 (found version "3.0.5") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Could NOT find Boost: missing: program_options (found /usr/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found version "1.80.0")) -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found Boost: /usr/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found version "1.80.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.16.0 Package libpcre2-8 was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre2-8.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre2-8', required by 'glib-2.0', not found Package libpcre2-8 was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre2-8.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre2-8', required by 'glib-2.0', not found Package libpcre2-8 was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre2-8.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre2-8', required by 'glib-2.0', not found Package libpcre2-8 was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre2-8.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre2-8', required by 'glib-2.0', not found -- Found Cairo: /usr/lib/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found suitable version "1.80.0", minimum required is "1.45.0") found components: system -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Boost: missing: program_options (found /usr/lib/cmake/Boost-1.80.0/BoostConfig.cmake (found version "1.80.0")) -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built Problem opening /proc/meminfo -- Found PythonInterp: /usr/bin/python3 (found version "3.10.8") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found SWIG: /usr/bin/swig (found version "4.0.2") -- Found SWIG: /usr/bin/swig (found suitable version "4.0.2", minimum required is "2.0") -- Found PythonLibs: /usr/lib/libpython3.10.so (found version "3.10.8") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS INCLUDE_INSTALL_DIR LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux + cmake --build i586-alt-linux --verbose --parallel 16 gmake: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/cmake -S/usr/src/RPM/BUILD/openbabel-3.1.1 -B/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux --check-build-system CMakeFiles/Makefile.cmake 0 gmake: Leaving directory 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src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o -MF CMakeFiles/inchi.dir/ichi_io.c.o.d -o CMakeFiles/inchi.dir/ichi_io.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichi_io.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o -MF CMakeFiles/inchi.dir/ichimap1.c.o.d -o CMakeFiles/inchi.dir/ichimap1.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimap1.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o -MF CMakeFiles/inchi.dir/ichicano.c.o.d -o CMakeFiles/inchi.dir/ichicano.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichicano.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o -MF CMakeFiles/inchi.dir/ichicans.c.o.d -o CMakeFiles/inchi.dir/ichicans.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichicans.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o -MF CMakeFiles/inchi.dir/ichimak2.c.o.d -o CMakeFiles/inchi.dir/ichimak2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimak2.c gmake[2]: Leaving directory 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src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o -MF CMakeFiles/inchi.dir/ichimap4.c.o.d -o CMakeFiles/inchi.dir/ichimap4.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichimap4.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o -MF CMakeFiles/inchi.dir/ichinorm.c.o.d -o CMakeFiles/inchi.dir/ichinorm.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichinorm.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o -MF CMakeFiles/inchi.dir/ichiprt2.c.o.d -o CMakeFiles/inchi.dir/ichiprt2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichiprt2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o -MF CMakeFiles/inchi.dir/ichican2.c.o.d -o CMakeFiles/inchi.dir/ichican2.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichican2.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o -MF CMakeFiles/inchi.dir/ichirvr7.c.o.d -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ichirvr7.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -O2 -DNDEBUG -fPIC -w -MD -MT src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o -MF CMakeFiles/inchi.dir/ikey_base26.c.o.d -o CMakeFiles/inchi.dir/ikey_base26.c.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/libinchi/ikey_base26.c gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS 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-I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/alias.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public 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/usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/op.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: 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-std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/generic.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rand.cpp:428:15: warning: 'void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)' defined but not used [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/builder.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/builder.cpp:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_tree.h:65, from /usr/include/c++/12/set:60, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:391:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 391 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:393:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 393 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:403:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 403 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:413:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 413 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:665:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 665 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:673:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 673 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:681:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 681 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:689:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 689 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:697:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 697 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:705:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 705 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1353:34: warning: array subscript has type 'char' [-Wchar-subscripts] 1353 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1357:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1357 | for (int i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 1370 | for (int i=0; i >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1571:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1571 | if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefield.cpp:1590:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] 1590 | if (j == rotorKey[i]) gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obutil.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/plugin.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/patty.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:48: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/fstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:37: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstream.h:333, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:53: /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h: In instantiation of 'std::streamsize zlib_stream::basic_zip_streambuf::flush() [with charT = char; traits = std::char_traits; std::streamsize = int]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h:86:5: required from 'zlib_stream::basic_zip_streambuf::~basic_zip_streambuf() [with charT = char; traits = std::char_traits]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h:631:24: required from 'zlib_stream::basic_zip_ostream::basic_zip_ostream(ostream_reference, bool, int, zlib_stream::EStrategy, int, int, size_t) [with charT = char; traits = std::char_traits; ostream_reference = std::basic_ostream&; size_t = unsigned int]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/obconversion.cpp:398:85: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstreamimpl.h:179:8: warning: the compiler can assume that the address of 'zlib_stream::basic_zip_streambuf >::_ostream' will never be NULL [-Waddress] 179 | if(&_ostream) | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/zipstream.h:132:25: note: 'zlib_stream::basic_zip_streambuf >::_ostream' declared here 132 | ostream_reference _ostream; | ^~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] 375 | OBMol *_parent; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] 374 | OBRing *_ptr; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/bond.h:31, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/query.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/query.cpp:25: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/phmodel.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tokenst.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(Pattern*, AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 446 | int index,size; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(Pattern*, BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] 478 | int index,size; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp: In member function 'void OpenBabel::OBReactionFacadePrivate::FindComponents()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/reactionfacade.cpp:122:15: warning: unused variable 'atm' [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/residue.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory 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/usr/src/RPM/BUILD/openbabel-3.1.1/src/spectrophore.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:410:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 412 | while (angle > 360.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:543:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 545 | while (angle > 360.0) | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:26: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/tautomer.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/tautomer.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 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/usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/transform.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/dlhandler_unix.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/matrix3x3.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:423:5: warning: multi-line comment [-Wcomment] 423 | // / \ | ^ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:968:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 968 | for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:1471:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1471 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 1478 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2009:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2009 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2019:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2019 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2034:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2034 | for (j=1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 2040 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2107:98: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 2107 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2238:67: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 2238 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 2240 | for (k=0; k::size_type' {aka 'unsigned int'} [-Wsign-compare] 2264 | for (j=1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 2575 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::flipSmall(int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:2985:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2985 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3024 | for (i=0; i, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3103:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3103 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3105:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 3105 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector*>)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3127:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] 3127 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3291:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3291 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3299:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3299 | for (i=0; i*>::size_type' {aka 'unsigned int'} [-Wsign-compare] 3309 | for (int i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3325:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const __gnu_cxx::__alloc_traits, int>::value_type' {aka 'const int'} [-Wsign-compare] 3325 | if (l <= maxValues[i]) { /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3374:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3374 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3427 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3437 | for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:3540:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 3540 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4410:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4410 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4415:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4415 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 4418 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 4591 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 4596 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 4601 | for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4636:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 4636 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4637:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4637 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4666:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4666 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4853 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4854 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4855:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4855 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4856:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4856 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4857:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4857 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4858:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4858 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4859:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 4859 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4840 | int cycleNumber; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5201 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 5202 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5232 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5277 | for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5311 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5328 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5358 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5368 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5399 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5412 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5428 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5667 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 5715 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5718 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5726 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 5798 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5828 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5894 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 5906 | for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] 5922 | for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] 5945 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 5960 | for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] 6000 | for (i=0;i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6007 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6026 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6034 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6035 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 6036 | for (i=0; i::size_type' {aka 'const unsigned int'} [-Wsign-compare] 6358 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6359:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 6359 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6546 | for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6591 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6593 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6599 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6609 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6612 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6623 | if (k == 1) for (i=0; i >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6632 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6642 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6843 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 6845 | for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6850 | for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6864 | for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] 6872 | for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6877 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] 6887 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6680 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 6960 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7024 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 7159 | for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 7167 | for (int i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7209 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7212 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7233 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 7236 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h: In constructor 'OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:77:11: warning: 'OpenBabel::SVGPainter::m_fontPointSize' will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'bool OpenBabel::SVGPainter::m_isFillcolor' [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'OpenBabel::SVGPainter::m_isFillcolor' will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/svgpainter.h:74:32: warning: 'std::set >* OpenBabel::SVGPainter::m_Gradients' [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/typer.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/vector3.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ 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/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: 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-c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/transform3d.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/stereo.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] 809 | vector::const_iterator(i); | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:809:36: note: remove parentheses 809 | vector::const_iterator(i); | ^~~ | - - /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/mol.cpp:1221:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1221 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 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-DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/tetrahedral.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/cistrans.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OBAtom*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1024:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1024 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1029:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] 1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp: In member function 'void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1238:100: note: add parentheses around 'sizeof (double)' to silence this warning 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here 1237 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/facade.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/spacegroup.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/atom.h:30, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_function.h:1438: /usr/include/c++/12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/conformersearch.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:351:23: warning: variable 'end_it' set but not used [-Wunused-but-set-variable] 351 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:789:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 789 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:850:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 850 | if (iniche > -1) | ~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1005:37: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1005 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1020:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1020 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1033:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 1033 | if (imax == -1) | ~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1050:40: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1050 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:976:10: warning: unused variable 'flag_niched' [-Wunused-variable] 976 | bool flag_niched = false; | ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1139:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1139 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1148:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1148 | if (iround < imax) | ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1156:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1156 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1181:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 1181 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:23: warning: unused variable 'lowest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/conformersearch.cpp:1105:37: warning: unused variable 'highest' [-Wunused-variable] 1105 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 2951 | return true; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_function.h:1438, from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/12/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/12/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp: In member function 'std::vector OpenBabel::OBAlign::GetAlignment()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/math/align.cpp:405:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 405 | for (unsigned int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/distgeom.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::generateInitialCoords()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable] 1089 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable] 1090 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::firstMinimization()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable] 1136 | double lb = _d->GetLowerBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable] 1137 | double ub = _d->GetUpperBounds(i, j); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable] 1115 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'bool OpenBabel::OBDistanceGeometry::minimizeFourthDimension()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable] 1160 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp: In member function 'double OpenBabel::DistGeomFunc::operator()(const Eigen::VectorXd&, Eigen::VectorXd&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/distgeom.cpp:1325:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 1325 | for (size_t i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp:14: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:18: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp: In member function 'virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:114:12: warning: unused variable 'ofs' [-Wunused-variable] 114 | ostream& ofs = *pConv->GetOutStream(); | ^~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 24%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Linking CXX shared module ../../lib/copyformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molreport.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/molreport.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Built target copyformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Linking CXX shared module ../../lib/nulformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Built target nulformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-3.1.1 /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eem.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/commandpainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/commandpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h: In member function 'void OpenBabel::OBStopwatch::Start()': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:65:14: error: 'clock' was not declared in this scope 65 | start= clock(); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:40:1: note: 'clock' is defined in header ''; did you forget to '#include '? 39 | #include +++ |+#include 40 | /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h: In member function 'double OpenBabel::OBStopwatch::Lap()': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:70:13: error: 'clock' was not declared in this scope 70 | stop= clock(); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:70:13: note: 'clock' is defined in header ''; did you forget to '#include '? /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:71:40: error: 'CLOCKS_PER_SEC' was not declared in this scope 71 | return((stop - start) / (double) CLOCKS_PER_SEC); | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:71:40: note: the macro 'CLOCKS_PER_SEC' had not yet been defined In file included from /usr/include/time.h:33, from /usr/include/pthread.h:23, from /usr/include/c++/12/i586-alt-linux/bits/gthr-default.h:35, from /usr/include/c++/12/i586-alt-linux/bits/gthr.h:148, from /usr/include/c++/12/ext/atomicity.h:35, from /usr/include/c++/12/bits/ios_base.h:39, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/painter.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/commandpainter.h:21, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/commandpainter.cpp:19: /usr/include/bits/time.h:34: note: it was later defined here 34 | #define CLOCKS_PER_SEC ((__clock_t) 1000000) | gmake[2]: *** [src/formats/CMakeFiles/painterformat.dir/build.make:90: src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o] Error 1 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: *** [CMakeFiles/Makefile2:1784: src/formats/CMakeFiles/painterformat.dir/all] Error 2 gmake[1]: *** Waiting for unfinished jobs.... gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 23%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:422:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 422 | if(aid <= mol.NumAtoms()) | ~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:785:10: warning: unused variable 'ch' [-Wunused-variable] 785 | char ch = ifs.peek(); | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:86:15: warning: 'bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)' defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:18: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h: In member function 'void OpenBabel::OBStopwatch::Start()': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:65:14: error: 'clock' was not declared in this scope 65 | start= clock(); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:40:1: note: 'clock' is defined in header ''; did you forget to '#include '? 39 | #include +++ |+#include 40 | /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h: In member function 'double OpenBabel::OBStopwatch::Lap()': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:70:13: error: 'clock' was not declared in this scope 70 | stop= clock(); | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:70:13: note: 'clock' is defined in header ''; did you forget to '#include '? /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:71:40: error: 'CLOCKS_PER_SEC' was not declared in this scope 71 | return((stop - start) / (double) CLOCKS_PER_SEC); | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obutil.h:71:40: note: the macro 'CLOCKS_PER_SEC' had not yet been defined In file included from /usr/include/time.h:33, from /usr/include/pthread.h:23, from /usr/include/c++/12/i586-alt-linux/bits/gthr-default.h:35, from /usr/include/c++/12/i586-alt-linux/bits/gthr.h:148, from /usr/include/c++/12/ext/atomicity.h:35, from /usr/include/c++/12/bits/ios_base.h:39, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/painter.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/depict/asciipainter.h:21, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:19: /usr/include/bits/time.h:34: note: it was later defined here 34 | #define CLOCKS_PER_SEC ((__clock_t) 1000000) | /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 118 | for (int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:615:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 615 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 24%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp: In member function 'virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:193:52: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 193 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:199:54: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] 199 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In member function 'void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:173:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In function 'void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:526:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_function.h:1438: /usr/include/c++/12/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:587:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In member function 'virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:807:17: warning: unused variable 'title' [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 27%] Linking CXX shared module ../../lib/MNAformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:27: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 29%] Built target MNAformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 25%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:29: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:21: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 28%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/getinchi.cpp gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:15: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 27%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/groupcontrib.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:33: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:25: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/none.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 29%] Linking CXX shared module ../../lib/reportformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Built target reportformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 27%] Linking CXX shared module ../../lib/mol2format.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Built target mol2format gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 23%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:35: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:26: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:43: /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int MDLValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 51 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 64 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 77 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 90 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 103 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 116 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 119 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 121 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 134 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 137 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 139 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 152 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 155 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 157 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 170 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 173 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 188 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 191 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 193 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 206 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 209 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 211 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 223 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 226 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 228 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 240 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 243 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 245 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 257 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 260 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 262 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 274 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 277 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 279 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 291 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 294 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 296 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 298 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 310 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 313 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 315 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 317 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 329 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 332 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 334 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 348 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 351 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 353 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 355 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 367 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 370 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 372 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 374 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 385 | if (val <= 7) return 7; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 388 | if (val <= 6) return 6; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 390 | if (val <= 5) return 5; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 392 | if (val <= 4) return 4; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 394 | if (val <= 3) return 3; break; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h: In function 'unsigned int HYDValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1488:10: warning: unused variable 'chiralWatch' [-Wunused-variable] 1488 | bool chiralWatch=false; | ^~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 30%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/canonical.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 30%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/unique.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const': /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 24%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-3.1.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] 655 | OBAtom* atom; | ^~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2200:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 2200 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable] 2685 | char symbol[10]; | ^~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2689:10: warning: unused variable 'normalValence' [-Wunused-variable] 2689 | bool normalValence = true; | ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2690:10: warning: unused variable 'writeExplicitHydrogen' [-Wunused-variable] 2690 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3139:22: warning: unused variable 'bond_order' [-Wunused-variable] 3139 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3134:20: warning: unused variable 'nbr_bond_order' [-Wunused-variable] 3134 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3286:11: warning: unused variable 'bo' [-Wunused-variable] 3286 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:3899:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 3899 | for (int i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] 3905 | for (int i=0; i struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 28%] Linking CXX shared module ../../lib/povrayformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Built target povrayformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:88:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 88 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 119 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 28%] Linking CXX shared module ../../lib/pdbformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Built target pdbformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Linking CXX shared module ../lib/plugin_descriptors.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Built target plugin_descriptors gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 29%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Linking CXX shared module ../lib/plugin_fingerprints.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:22: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:21: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Built target plugin_fingerprints gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:40: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:289:58: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:41: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:295:60: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:42: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:301:62: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:43: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:307:64: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:39: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:313:56: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:39: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:319:56: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:49: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.h:325:76: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:32: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:21: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:37: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] 431 | double ab[3]; | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]': /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:478:37: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]' /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:193:54: required from here /usr/src/RPM/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:24: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/loader.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:31: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:29: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp: In member function 'virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:265:10: warning: unused variable 'done' [-Wunused-variable] 265 | bool done = true; | ^~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/largest.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp: In member function 'virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:92:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 92 | if(!pConv) | ^~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:95:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 95 | if(pConv->IsFirstInput()) | ^~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Linking CXX shared module ../../lib/inchiformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Built target inchiformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:21, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/optransform.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/phmodel.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Linking CXX shared module ../../lib/mdlformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Built target mdlformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/sort.cpp:32:28: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/xout.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp:19: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:16: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.h:15, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:17: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:15: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:33: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:29: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp: In member function 'virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:19: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:291:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Linking CXX shared module ../../lib/smilesformat.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 -lm -ldl -lz -lcairo -lc -lm gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Built target smilesformat gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:23: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:22: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp: In member function 'void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:20: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:19: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 35%] Linking CXX shared module ../lib/plugin_forcefields.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Built target plugin_forcefields gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Linking CXX shared module ../lib/plugin_ops.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Built target plugin_ops gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 31%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 32%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qeq.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 33%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/include -I/usr/src/RPM/BUILD/openbabel-3.1.1/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/data -I/usr/src/RPM/BUILD/openbabel-3.1.1/include -I/usr/include/eigen3 -isystem /usr/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp In file included from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.h:22, from /usr/src/RPM/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp:21: /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /usr/src/RPM/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Linking CXX shared module ../lib/plugin_charges.so cd /usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -flto=auto -march=i586 -mtune=generic -pthread -O2 -DNDEBUG -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -Wl,-rpath,/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux/lib: -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 gmake[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' [ 37%] Built target plugin_charges gmake[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-3.1.1/i586-alt-linux' gmake: *** [Makefile:146: all] Error 2 error: Bad exit status from /usr/src/tmp/rpm-tmp.65813 (%build) RPM build errors: Bad exit status from /usr/src/tmp/rpm-tmp.65813 (%build) Command exited with non-zero status 1 390.92user 30.91system 0:49.77elapsed 847%CPU (0avgtext+0avgdata 518800maxresident)k 0inputs+0outputs (0major+8513391minor)pagefaults 0swaps hsh-rebuild: rebuild of `openbabel-3.1.1-alt2.src.rpm' failed. Command exited with non-zero status 1 3.12user 1.36system 1:14.58elapsed 6%CPU (0avgtext+0avgdata 108588maxresident)k 0inputs+0outputs (32348major+282836minor)pagefaults 0swaps