<86>Apr 14 12:06:46 userdel[3429244]: delete user 'rooter'
<86>Apr 14 12:06:46 userdel[3429244]: removed group 'rooter' owned by 'rooter'
<86>Apr 14 12:06:46 groupadd[3429254]: group added to /etc/group: name=rooter, GID=1262
<86>Apr 14 12:06:46 groupadd[3429254]: group added to /etc/gshadow: name=rooter
<86>Apr 14 12:06:46 groupadd[3429254]: new group: name=rooter, GID=1262
<86>Apr 14 12:06:46 useradd[3429279]: new user: name=rooter, UID=1262, GID=1262, home=/root, shell=/bin/bash
<86>Apr 14 12:06:47 userdel[3429289]: delete user 'builder'
<86>Apr 14 12:06:47 userdel[3429289]: removed group 'builder' owned by 'builder'
<86>Apr 14 12:06:47 userdel[3429289]: removed shadow group 'builder' owned by 'builder'
<86>Apr 14 12:06:47 groupadd[3429296]: group added to /etc/group: name=builder, GID=1263
<86>Apr 14 12:06:47 groupadd[3429296]: group added to /etc/gshadow: name=builder
<86>Apr 14 12:06:47 groupadd[3429296]: new group: name=builder, GID=1263
<86>Apr 14 12:06:47 useradd[3429303]: new user: name=builder, UID=1263, GID=1263, home=/usr/src, shell=/bin/bash
<13>Apr 14 12:06:52 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902884 installed
<13>Apr 14 12:06:52 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633315 installed
<13>Apr 14 12:06:52 rpmi: libexpat-2.4.3-alt1 p9+293696.100.1.1 1643124786 installed
<13>Apr 14 12:06:52 rpmi: perl-HTTP-Date-6.02-alt1 1348645274 installed
<13>Apr 14 12:06:52 rpmi: libjasper-2.0.22-alt1 p9+259398.100.5.1 1602695042 installed
<13>Apr 14 12:06:52 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Apr 14 12:06:52 rpmi: libwebp7-1.0.3-alt1 p9+234901.200.1.1 1563552213 installed
<13>Apr 14 12:06:52 rpmi: libogg-1.3.4-alt1 p9+249556.100.1.1 1586300644 installed
<13>Apr 14 12:06:52 rpmi: libgnustep-objc2-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734429 installed
<13>Apr 14 12:06:52 rpmi: liblcms2-2.9-alt1 1516411888 installed
<13>Apr 14 12:06:52 rpmi: libltdl7-2.4.6-alt1 sisyphus+226971.100.2.1 1554906326 installed
<13>Apr 14 12:06:52 rpmi: libopenjpeg2.0-2.3.1-alt1 sisyphus+226454.100.1.1 1554284336 installed
<13>Apr 14 12:06:52 rpmi: libjbig-2.1-alt1 1401380921 installed
<13>Apr 14 12:06:52 rpmi: libtiff5-4.0.10.0.57.f9fc01c3-alt1 sisyphus+226958.100.1.1 1554850937 installed
<13>Apr 14 12:06:52 rpmi: libICE-1.0.9-alt1 1409902719 installed
<13>Apr 14 12:06:52 rpmi: libfribidi-1.0.7-alt1 p9+238309.200.1.1 1569787041 installed
<13>Apr 14 12:06:52 rpmi: libglvnd-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed
<13>Apr 14 12:06:52 rpmi: libwayland-server-1.18.0-alt1 p9+260591.100.12.1 1606212847 installed
<13>Apr 14 12:06:52 rpmi: ilmbase25-common-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed
<13>Apr 14 12:06:52 rpmi: libiex25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed
<13>Apr 14 12:06:53 rpmi: libicu64-1:6.4.2-alt3 p9+270873.100.1.1 1619612690 installed
<13>Apr 14 12:06:53 rpmi: libnettle6-3.4.1-alt1 sisyphus+226533.100.2.1 1554512181 installed
<13>Apr 14 12:06:53 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237682 installed
<13>Apr 14 12:06:53 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed
<13>Apr 14 12:06:53 rpmi: libxslt-1.1.34-alt1.p9.1 p9+261811.300.3.1 1605513910 installed
<13>Apr 14 12:06:53 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed
<13>Apr 14 12:06:53 rpmi: perl-Compress-Raw-Zlib-2.086-alt1 sisyphus+226395.100.1.2 1554269783 installed
<13>Apr 14 12:06:53 rpmi: perl-libnet-1:3.11-alt1 1511423541 installed
<13>Apr 14 12:06:53 rpmi: libgdbm-1.8.3-alt10 1454943313 installed
<13>Apr 14 12:06:53 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed
<13>Apr 14 12:06:53 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed
<13>Apr 14 12:06:53 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed
<13>Apr 14 12:06:53 rpmi: libaspell-0.60.8-alt1 p9+261825.100.2.1 1605785529 installed
<13>Apr 14 12:06:53 rpmi: llvm11.0-filesystem-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed
<13>Apr 14 12:06:53 rpmi: llvm-common-11.0.1-alt3 p9+281614.40.11.1 1628750610 installed
<13>Apr 14 12:06:56 rpmi: clang11.0-libs-support-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed
<13>Apr 14 12:06:57 rpmi: llvm11.0-libs-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed
<13>Apr 14 12:06:59 rpmi: clang11.0-libs-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed
<13>Apr 14 12:06:59 rpmi: clang11.0-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed
<13>Apr 14 12:06:59 rpmi: llvm-common-clang-11.0.1-alt3 p9+281614.40.11.1 1628750610 installed
<13>Apr 14 12:06:59 rpmi: clang11.0-devel-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed
<13>Apr 14 12:06:59 rpmi: llvm-common-clang-devel-11.0.1-alt3 p9+281614.40.11.1 1628750610 installed
<13>Apr 14 12:06:59 rpmi: aspell-0.60.8-alt1 p9+261825.100.2.1 1605785529 installed
<13>Apr 14 12:06:59 rpmi: libe2fs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed
<13>Apr 14 12:06:59 rpmi: libss-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed
<13>Apr 14 12:06:59 rpmi: e2fsprogs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed
<13>Apr 14 12:06:59 rpmi: libgdbm-devel-1.8.3-alt10 1454943313 installed
<13>Apr 14 12:06:59 rpmi: libgpg-error-devel-1.36-alt1 p9+261942.140.4.1 1606237682 installed
<13>Apr 14 12:06:59 rpmi: libhogweed4-3.4.1-alt1 sisyphus+226533.100.2.1 1554512181 installed
<13>Apr 14 12:06:59 rpmi: libilmthread25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed
<13>Apr 14 12:06:59 rpmi: libimath25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed
<13>Apr 14 12:06:59 rpmi: libhalf25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed
<13>Apr 14 12:06:59 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed
<13>Apr 14 12:06:59 rpmi: libraw-0.19.5-alt1 p9+236466.300.1.1 1566486023 installed
<13>Apr 14 12:06:59 rpmi: libgnustep-objc2-devel-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734429 installed
<13>Apr 14 12:06:59 rpmi: libflac8-1.3.3-alt1 p9+249557.100.1.1 1586301784 installed
<13>Apr 14 12:06:59 rpmi: libvorbis-1.3.6-alt2 sisyphus+220072.200.2.2 1548744467 installed
<13>Apr 14 12:06:59 rpmi: libicns-0.7.1-alt1.2 sisyphus+223351.100.1.1 1551468866 installed
<13>Apr 14 12:06:59 rpmi: perl-File-Listing-6.04-alt1 1329758996 installed
<13>Apr 14 12:06:59 rpmi: libflif-0.3-alt1 sisyphus+223364.100.1.1 1551501707 installed
<13>Apr 14 12:06:59 rpmi: libxml2-devel-1:2.9.10-alt6.p9.1 p9+314487.100.1.1 1675223837 installed
<13>Apr 14 12:07:00 rpmi: libicu65-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Apr 14 12:07:00 rpmi: icu-utils-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Apr 14 12:07:00 rpmi: libgif-4.1.6-alt3 1299634266 installed
<13>Apr 14 12:07:00 rpmi: libImageMagick6-common-6.9.11.23-alt1 p9+265603.200.9.1 1613079173 installed
<13>Apr 14 12:07:00 rpmi: libwmflite-0.2.8.4-alt13 1506519334 installed
<13>Apr 14 12:07:00 rpmi: liblqr-0.4.2-alt1 1383038436 installed
<13>Apr 14 12:07:00 rpmi: libx265-160-2.8-alt1 1529659165 installed
<13>Apr 14 12:07:00 rpmi: libde265-1.0.3-alt1 1528888214 installed
<13>Apr 14 12:07:00 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Apr 14 12:07:00 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Apr 14 12:07:00 rpmi: libgts-0.7.6-alt2.drc20130205.1 sisyphus+225727.500.8.1 1553672625 installed
<13>Apr 14 12:07:00 rpmi: libpaper-1.1.26-alt1 sisyphus+221360.100.1.1 1549974198 installed
<13>Apr 14 12:07:00 rpmi: icon-theme-hicolor-0.17-alt2 p9+248347.100.1.1 1584981172 installed
<13>Apr 14 12:07:00 rpmi: shared-mime-info-1.13.1-alt1 p9+238204.100.1.1 1569496447 installed
<13>Apr 14 12:07:00 rpmi: gsettings-desktop-schemas-data-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed
<13>Apr 14 12:07:00 rpmi: libgio-2.60.7-alt1 p9+237353.100.2.2 1568372980 installed
<13>Apr 14 12:07:00 rpmi: gsettings-desktop-schemas-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed
<13>Apr 14 12:07:00 rpmi: libgdk-pixbuf-locales-2.38.2-alt1 p9+237353.1000.2.2 1568374008 installed
<13>Apr 14 12:07:00 rpmi: libgdk-pixbuf-2.38.2-alt1 p9+237353.1000.2.2 1568374008 installed
<13>Apr 14 12:07:00 rpmi: gtk-update-icon-cache-3.24.29-alt0.M90P.1 p9+277455.200.2.1 1625582389 installed
<13>Apr 14 12:07:00 rpmi: libheif-1.6.2-alt1 p9+244301.100.3.1 1582815556 installed
<13>Apr 14 12:07:01 rpmi: libgtk+2-locales-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed
<13>Apr 14 12:07:01 rpmi: libatk-locales-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed
<13>Apr 14 12:07:01 rpmi: libatk-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed
<13>Apr 14 12:07:01 rpmi: libdatrie-0.2.9-alt1_6 1511686677 installed
<13>Apr 14 12:07:01 rpmi: libthai-0.1.28-alt1_1 sisyphus+226107.100.1.1 1554123079 installed
<13>Apr 14 12:07:01 rpmi: libpixman-3:0.38.4-alt1 sisyphus+228006.100.1.1 1556013486 installed
<13>Apr 14 12:07:01 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed
<13>Apr 14 12:07:01 rpmi: libharfbuzz-2.8.1-alt1 p9+319683.500.4.1 1689082543 installed
<13>Apr 14 12:07:01 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed
<13>Apr 14 12:07:01 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed
Updating fonts cache: <29>Apr 14 12:07:02 fontconfig: Updating fonts cache: succeeded
[ DONE ]
<13>Apr 14 12:07:02 rpmi: libraqm-0.5.0-alt1 1530413325 installed
<13>Apr 14 12:07:02 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268594 installed
<13>Apr 14 12:07:02 rpmi: libwayland-client-1.18.0-alt1 p9+260591.100.12.1 1606212847 installed
<13>Apr 14 12:07:02 rpmi: libpciaccess-1:0.14-alt1 1528969624 installed
<13>Apr 14 12:07:02 rpmi: libdrm-1:2.4.105-alt2 p9+271012.100.1.1 1619786664 installed
<13>Apr 14 12:07:02 rpmi: libgbm-4:21.0.3-alt1 p9+271012.200.3.1 1621244963 installed
<13>Apr 14 12:07:02 rpmi: libX11-locales-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Apr 14 12:07:02 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949347 installed
<13>Apr 14 12:07:02 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed
<13>Apr 14 12:07:02 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed
<13>Apr 14 12:07:02 rpmi: libX11-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Apr 14 12:07:02 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949422 installed
<13>Apr 14 12:07:02 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed
<13>Apr 14 12:07:02 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614842 installed
<13>Apr 14 12:07:02 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949214 installed
<13>Apr 14 12:07:02 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed
<13>Apr 14 12:07:02 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949698 installed
<13>Apr 14 12:07:02 rpmi: libXxf86vm-1.1.4-alt2 1527672159 installed
<13>Apr 14 12:07:02 rpmi: libGLX-mesa-4:21.0.3-alt1 p9+271012.200.3.1 1621244963 installed
<13>Apr 14 12:07:02 rpmi: libEGL-mesa-4:21.0.3-alt1 p9+271012.200.3.1 1621244963 installed
<13>Apr 14 12:07:02 rpmi: libEGL-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed
<13>Apr 14 12:07:02 rpmi: libGLX-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed
<13>Apr 14 12:07:02 rpmi: libGL-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed
<13>Apr 14 12:07:02 rpmi: libcairo-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515520 installed
<13>Apr 14 12:07:02 rpmi: libpango-1.44.6-alt1 p9+237353.700.2.2 1568373865 installed
<13>Apr 14 12:07:02 rpmi: librsvg-1:2.46.4-alt1 p9+248366.400.6.1 1587060872 installed
<13>Apr 14 12:07:02 rpmi: liblasi-1.1.2-alt1.qa1 1460141148 installed
<13>Apr 14 12:07:02 rpmi: libXi-1.7.9-alt2 sisyphus+226377.100.1.2 1554260258 installed
<13>Apr 14 12:07:02 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268223 installed
<13>Apr 14 12:07:02 rpmi: libXt-1.1.4-alt1 1369984716 installed
<13>Apr 14 12:07:02 rpmi: libXpm-3.5.12-alt1 sisyphus+223149.400.2.1 1551268300 installed
<13>Apr 14 12:07:02 rpmi: libgd3-2.2.5-alt3 sisyphus+226800.200.2.1 1554649314 installed
<13>Apr 14 12:07:02 rpmi: libXcomposite-0.4.5-alt1 sisyphus+225206.300.1.2 1552949136 installed
<13>Apr 14 12:07:02 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949282 installed
<13>Apr 14 12:07:02 rpmi: openexr25-common-2.5.6-alt1 p9+272589.200.3.1 1622735064 installed
<13>Apr 14 12:07:02 rpmi: libilmimf25-2.5.6-alt1 p9+272589.200.3.1 1622735064 installed
<13>Apr 14 12:07:02 rpmi: libopus-1.3.1-alt3 p9+247689.300.3.1 1584537429 installed
<13>Apr 14 12:07:02 rpmi: libgsm-1.0.17-alt1 1523356157 installed
<13>Apr 14 12:07:02 rpmi: libsndfile-1.0.30-alt2 p9+262916.200.2.1 1607353710 installed
<13>Apr 14 12:07:02 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228072 installed
<13>Apr 14 12:07:02 rpmi: libsystemd-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed
<13>Apr 14 12:07:02 rpmi: libdbus-1.12.16-alt2 p9+240607.100.1.1 1573553670 installed
<13>Apr 14 12:07:02 rpmi: libavahi-0.8-alt2 p9+270905.100.1.1 1619639855 installed
<13>Apr 14 12:07:02 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696275 installed
<13>Apr 14 12:07:02 rpmi: libgnutls30-3.6.16-alt5 p9+343958.100.1.1 1712067310 installed
<13>Apr 14 12:07:02 rpmi: libgnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027556 installed
<13>Apr 14 12:07:02 rpmi: libcups-2.3.3-alt7.op2 p9+289603.100.2.1 1637911367 installed
<13>Apr 14 12:07:03 rpmi: libgtk+2-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed
<13>Apr 14 12:07:04 rpmi: libgs-9.27-alt1.M90P.1 p9+258832.300.4.1 1601632175 installed
<13>Apr 14 12:07:04 rpmi: libgraphviz-2.41.2-alt4 p9+259365.100.2.1 1602278839 installed
<13>Apr 14 12:07:04 rpmi: perl-Try-Tiny-0.30-alt1 1514318058 installed
<13>Apr 14 12:07:04 rpmi: perl-IO-Socket-IP-0.39-alt1 1494508514 installed
<13>Apr 14 12:07:04 rpmi: perl-Compress-Raw-Bzip2-2.086-alt1 sisyphus+226394.100.1.2 1554269409 installed
<13>Apr 14 12:07:04 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed
<13>Apr 14 12:07:04 rpmi: perl-Filter-1.59-alt1.1 sisyphus+219907.400.1.1 1548343225 installed
<13>Apr 14 12:07:04 rpmi: perl-Encode-3.01-alt1 sisyphus+224923.100.1.1 1552474113 installed
<13>Apr 14 12:07:04 rpmi: perl-URI-1.76-alt1 sisyphus+220243.100.1.1 1548863244 installed
<13>Apr 14 12:07:04 rpmi: perl-IO-Compress-2.086-alt1 sisyphus+226399.100.2.1 1554270186 installed
<13>Apr 14 12:07:04 rpmi: perl-Net-HTTP-6.18-alt1 1526560501 installed
<13>Apr 14 12:07:04 rpmi: perl-HTML-Parser-3.72-alt1.2 sisyphus+219907.600.1.1 1548343407 installed
<13>Apr 14 12:07:04 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed
<13>Apr 14 12:07:04 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed
<13>Apr 14 12:07:04 rpmi: perl-IO-HTML-1.001-alt1 1404821752 installed
<13>Apr 14 12:07:04 rpmi: perl-HTTP-Message-6.18-alt1 1528288416 installed
<13>Apr 14 12:07:04 rpmi: perl-HTTP-Cookies-6.04-alt1 1504116575 installed
<13>Apr 14 12:07:04 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed
<13>Apr 14 12:07:04 rpmi: perl-XML-Writer-0.625-alt1 1402417374 installed
<13>Apr 14 12:07:04 rpmi: perl-Term-ANSIColor-4.06-alt1 1479407083 installed
<13>Apr 14 12:07:04 rpmi: perl-Data-Dump-1.23-alt1 1444601978 installed
<13>Apr 14 12:07:04 rpmi: perl-libwww-6.39-alt1 sisyphus+229237.100.1.1 1557650051 installed
<13>Apr 14 12:07:04 rpmi: perl-XML-Parser-2.44-alt2.2 sisyphus+219907.1300.1.1 1548343654 installed
<13>Apr 14 12:07:04 rpmi: libdb4.7-devel-4.7.25-alt9 1490438456 installed
<13>Apr 14 12:07:04 rpmi: perl-devel-1:5.28.3-alt1 p9+261964.100.3.1 1606316185 installed
<13>Apr 14 12:07:04 rpmi: hwinfo-utils-21.23-alt1.1 sisyphus+223919.100.1.1 1551893088 installed
<13>Apr 14 12:07:04 rpmi: gnustep-dirs-1.0-alt2 1355065929 installed
<13>Apr 14 12:07:04 rpmi: gdb-common-8.2.50.20180917-alt6 p9+260468.500.4.1 1603887849 installed
<13>Apr 14 12:07:04 rpmi: libobjc4-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Apr 14 12:07:04 rpmi: libobjc8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Apr 14 12:07:05 rpmi: gcc8-objc-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Apr 14 12:07:05 rpmi: gcc-objc-8-alt2 p9+246536.100.3.1 1582643803 installed
<13>Apr 14 12:07:05 rpmi: djvu-common-3.5.25.3-alt1 1365826139 installed
<13>Apr 14 12:07:05 rpmi: libdjvu-3.5.25.3-alt1 1365826137 installed
<13>Apr 14 12:07:05 rpmi: libImageMagick6.6-6.9.11.23-alt1 p9+265603.200.9.1 1613079173 installed
<13>Apr 14 12:07:05 rpmi: libgnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149553 installed
<13>Apr 14 12:07:05 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Apr 14 12:07:05 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Apr 14 12:07:05 rpmi: ca-certificates-2021.10.06-alt1 p9+289862.100.1.1 1637033643 installed
<13>Apr 14 12:07:05 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed
<13>Apr 14 12:07:05 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed
<13>Apr 14 12:07:05 rpmi: libcrypto1.1-1.1.1u-alt1 p9+322202.100.1.1 1685863283 installed
<13>Apr 14 12:07:05 rpmi: libssl1.1-1.1.1u-alt1 p9+322202.100.1.1 1685863283 installed
<13>Apr 14 12:07:05 rpmi: python3-3.7.17-alt1 p9+340935.200.3.1 1708337932 installed
<13>Apr 14 12:07:05 rpmi: libpython3-3.7.17-alt1 p9+340935.200.3.1 1708337932 installed
<13>Apr 14 12:07:06 rpmi: python3-base-3.7.17-alt1 p9+340935.200.3.1 1708337932 installed
<13>Apr 14 12:07:06 rpmi: gdb-8.2.50.20180917-alt6 p9+260468.500.4.1 1603887849 installed
<13>Apr 14 12:07:06 rpmi: gnustep-make-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed
<13>Apr 14 12:07:06 rpmi: gnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027556 installed
<13>Apr 14 12:07:06 rpmi: gnustep-base-devel-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027556 installed
<13>Apr 14 12:07:06 rpmi: alsa-ucm-conf-1.2.4-alt1 p9+250722.2300.14.1 1614269485 installed
<13>Apr 14 12:07:06 rpmi: alsa-topology-conf-1.2.4-alt1 p9+250722.2200.14.1 1614269467 installed
<13>Apr 14 12:07:06 rpmi: libalsa-1:1.2.4-alt1 p9+250722.2400.14.1 1614269549 installed
<13>Apr 14 12:07:07 rpmi: flite-2.1-alt1 sisyphus+222718.100.1.1 1551026078 installed
<13>Apr 14 12:07:07 rpmi: libao-1:1.2.2-alt3 1512129137 installed
<13>Apr 14 12:07:07 rpmi: gnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149553 installed
<13>Apr 14 12:07:07 rpmi: gnustep-gui-devel-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149553 installed
<13>Apr 14 12:07:07 rpmi: gnustep-make-devel-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed
<13>Apr 14 12:07:07 rpmi: libgnutls-devel-3.6.16-alt5 p9+343958.100.1.1 1712067310 installed
<13>Apr 14 12:07:07 rpmi: libicu-devel-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Apr 14 12:07:07 rpmi: libxslt-devel-1.1.34-alt1.p9.1 p9+261811.300.3.1 1605513910 installed
<13>Apr 14 12:07:07 rpmi: libgcrypt-devel-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed
<13>Apr 14 12:07:07 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550600768 installed
<13>Apr 14 12:07:07 rpmi: libgmp-devel-6.1.2-alt3 sisyphus+229304.40.2.1 1557770931 installed
<13>Apr 14 12:07:07 rpmi: libffi-devel-1:3.2.1-alt3 p9+251949.100.1.1 1589887590 installed
Building target platforms: x86_64
Building for target x86_64
Wrote: /usr/src/in/nosrpm/gnustep-BioCocoa-2.2.2-alt3.nosrc.rpm (w1.gzdio)
Installing gnustep-BioCocoa-2.2.2-alt3.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.10788
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf gnustep-BioCocoa-2.2.2
+ echo 'Source #0 (gnustep-BioCocoa-2.2.2.tar):'
Source #0 (gnustep-BioCocoa-2.2.2.tar):
+ /bin/tar -xf /usr/src/RPM/SOURCES/gnustep-BioCocoa-2.2.2.tar
+ cd gnustep-BioCocoa-2.2.2
+ /bin/chmod -c -Rf u+rwX,go-w .
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.10788
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gnustep-BioCocoa-2.2.2
+ . /usr/share/GNUstep/Makefiles/GNUstep.sh
++ '[' -n '' ']'
++ GNUSTEP_MAKE_STRICT_V2_MODE=no
++ '[' -z '' ']'
++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf
++ '[' -z '' ']'
++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf
++ '[' -f /etc/GNUstep/GNUstep.conf ']'
++ . /etc/GNUstep/GNUstep.conf
+++ GNUSTEP_SYSTEM_ROOT=/usr
+++ GNUSTEP_LOCAL_ROOT=/usr
+++ GNUSTEP_NETWORK_ROOT=/usr
+++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf
+++ GNUSTEP_USER_DIR=GNUstep
+++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults
+++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles
+++ GNUSTEP_SYSTEM_USERS_DIR=/home
+++ GNUSTEP_NETWORK_USERS_DIR=/home
+++ GNUSTEP_LOCAL_USERS_DIR=/home
+++ GNUSTEP_SYSTEM_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib64/GNUstep/WebApplications
+++ GNUSTEP_SYSTEM_TOOLS=/usr/bin
+++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin
+++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib64/GNUstep
+++ GNUSTEP_SYSTEM_HEADERS=/usr/include
+++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib64
+++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep
+++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man
+++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info
+++ GNUSTEP_NETWORK_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib64/GNUstep/WebApplications
+++ GNUSTEP_NETWORK_TOOLS=/usr/bin
+++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin
+++ GNUSTEP_NETWORK_LIBRARY=/usr/lib64/GNUstep
+++ GNUSTEP_NETWORK_HEADERS=/usr/include
+++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib64
+++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep
+++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man
+++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info
+++ GNUSTEP_LOCAL_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib64/GNUstep/WebApplications
+++ GNUSTEP_LOCAL_TOOLS=/usr/bin
+++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin
+++ GNUSTEP_LOCAL_LIBRARY=/usr/lib64/GNUstep
+++ GNUSTEP_LOCAL_HEADERS=/usr/include
+++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib64
+++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep
+++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man
+++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info
+++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications
+++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin
+++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications
+++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools
+++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin
+++ GNUSTEP_USER_DIR_LIBRARY=GNUstep
+++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers
+++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries
+++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation
+++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man
+++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info
++ GNUSTEP_HOME=/usr/src
++ '[' -n .GNUstep.conf ']'
++ case "$GNUSTEP_USER_CONFIG_FILE" in
++ '[' -f /usr/src/.GNUstep.conf ']'
++ '[' no = yes ']'
++ '[' -z /usr ']'
++ '[' -z /usr ']'
++ '[' -z /usr ']'
++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT
++ '[' no = yes ']'
++ GNUSTEP_FLATTENED=yes
++ export GNUSTEP_FLATTENED
++ GNUSTEP_IS_FLATTENED=yes
++ '[' -z gnu-gnu-gnu ']'
++ '[' '!' no = yes ']'
++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO
++ '[' -z /usr/share/GNUstep/Makefiles ']'
++ export GNUSTEP_MAKEFILES
++ '[' no = yes ']'
++ '[' -z GNUstep ']'
++ case "$GNUSTEP_USER_DIR" in
++ GNUSTEP_USER_ROOT=/usr/src/GNUstep
++ unset GNUSTEP_USER_DIR
++ export GNUSTEP_USER_ROOT
++ '[' -z '' ']'
++ GNUSTEP_HOST=
++ GNUSTEP_HOST_CPU=
++ GNUSTEP_HOST_VENDOR=alt
++ GNUSTEP_HOST_OS=linux-gnu
++ '[' -z '' ']'
+++ pwd
++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2
++ cd /tmp
+++ /usr/share/GNUstep/Makefiles/config.guess
++ GNUSTEP_HOST=x86_64-pc-linux-gnu
+++ /usr/share/GNUstep/Makefiles/config.sub x86_64-pc-linux-gnu
++ GNUSTEP_HOST=x86_64-pc-linux-gnu
++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2
++ unset tmpdir
++ '[' -z '' ']'
+++ /usr/share/GNUstep/Makefiles/cpu.sh x86_64-pc-linux-gnu
++ GNUSTEP_HOST_CPU=x86_64
+++ /usr/share/GNUstep/Makefiles/clean_cpu.sh x86_64
++ GNUSTEP_HOST_CPU=x86_64
++ '[' -z alt ']'
++ '[' -z linux-gnu ']'
++ '[' '!' no = yes ']'
++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS
++ . /usr/share/GNUstep/Makefiles/filesystem.sh
+++ '[' -z /home ']'
+++ '[' -z /home ']'
+++ '[' -z /home ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/WebApplications ']'
+++ '[' -z /usr/bin ']'
+++ '[' -z /usr/sbin ']'
+++ '[' -z /usr/lib64/GNUstep ']'
+++ '[' -z /usr/include ']'
+++ '[' -z /usr/lib64 ']'
+++ '[' -z /usr/share/doc/GNUstep ']'
+++ '[' -z /usr/share/man ']'
+++ '[' -z /usr/share/info ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/WebApplications ']'
+++ '[' -z /usr/bin ']'
+++ '[' -z /usr/sbin ']'
+++ '[' -z /usr/lib64/GNUstep ']'
+++ '[' -z /usr/include ']'
+++ '[' -z /usr/lib64 ']'
+++ '[' -z /usr/share/doc/GNUstep ']'
+++ '[' -z /usr/share/man ']'
+++ '[' -z /usr/share/info ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/WebApplications ']'
+++ '[' -z /usr/bin ']'
+++ '[' -z /usr/sbin ']'
+++ '[' -z /usr/lib64/GNUstep ']'
+++ '[' -z /usr/include ']'
+++ '[' -z /usr/lib64 ']'
+++ '[' -z /usr/share/doc/GNUstep ']'
+++ '[' -z /usr/share/man ']'
+++ '[' -z /usr/share/info ']'
+++ '[' -z GNUstep/Applications ']'
+++ '[' -z GNUstep/Applications/Admin ']'
+++ '[' -z GNUstep/WebApplications ']'
+++ '[' -z GNUstep/Tools ']'
+++ '[' -z GNUstep/Tools/Admin ']'
+++ '[' -z GNUstep ']'
+++ '[' -z GNUstep/Headers ']'
+++ '[' -z GNUstep/Libraries ']'
+++ '[' -z GNUstep/Documentation ']'
+++ '[' -z GNUstep/Documentation/man ']'
+++ '[' -z GNUstep/Documentation/info ']'
+++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in
+++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in
+++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in
+++ case "$GNUSTEP_USER_DIR_APPS" in
+++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications
+++ unset GNUSTEP_USER_DIR_APPS
+++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in
+++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin
+++ unset GNUSTEP_USER_DIR_ADMIN_APPS
+++ case "$GNUSTEP_USER_DIR_WEB_APPS" in
+++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications
+++ unset GNUSTEP_USER_DIR_WEB_APPS
+++ case "$GNUSTEP_USER_DIR_TOOLS" in
+++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools
+++ unset GNUSTEP_USER_DIR_TOOLS
+++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in
+++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin
+++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS
+++ case "$GNUSTEP_USER_DIR_LIBRARY" in
+++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep
+++ unset GNUSTEP_USER_DIR_LIBRARY
+++ case "$GNUSTEP_USER_DIR_HEADERS" in
+++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers
+++ unset GNUSTEP_USER_DIR_HEADERS
+++ case "$GNUSTEP_USER_DIR_LIBRARIES" in
+++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries
+++ unset GNUSTEP_USER_DIR_LIBRARIES
+++ case "$GNUSTEP_USER_DIR_DOC" in
+++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation
+++ unset GNUSTEP_USER_DIR_DOC
+++ case "$GNUSTEP_USER_DIR_DOC_MAN" in
+++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man
+++ unset GNUSTEP_USER_DIR_DOC_MAN
+++ case "$GNUSTEP_USER_DIR_DOC_INFO" in
+++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info
+++ unset GNUSTEP_USER_DIR_DOC_INFO
++ unset GNUSTEP_HOME
++ fixup_paths=no
+++ echo /usr/share/GNUstep/Makefiles
+++ sed 's|^[a-zA-Z]:/.*$||'
++ path_check=/usr/share/GNUstep/Makefiles
++ '[' -z /usr/share/GNUstep/Makefiles ']'
++ unset path_check
++ '[' no = yes ']'
++ '[' -z /usr:/usr/src/GNUstep ']'
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no
++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/sbin -a -w /usr/sbin ']'
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/sbin -a -w /usr/sbin ']'
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/sbin -a -w /usr/sbin ']'
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']'
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_TOOLS_PATHLIST
++ '[' yes = no ']'
++ path_fragment=/usr/bin
++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']'
++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games:
++ grep -v :/usr/bin:
++ for dir in $GNUSTEP_TOOLS_PATHLIST
++ '[' yes = no ']'
++ path_fragment=/usr/src/GNUstep/Tools
++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']'
++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games:
++ grep -v :/usr/src/GNUstep/Tools:
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset path_fragment
++ unset GNUSTEP_TOOLS_PATHLIST
++ export PATH
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib64 /usr/lib64 /usr/lib64 no
++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib64:/usr/src/GNUstep/Libraries
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_LIBRARIES_PATHLIST
++ '[' yes = yes ']'
++ path_fragment=/usr/lib64
++ case "$GNUSTEP_HOST_OS" in
++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']'
++ echo :/usr/src/GNUstep/Libraries:/usr/lib64:
++ grep -v :/usr/lib64:
++ export LD_LIBRARY_PATH
++ for dir in $GNUSTEP_LIBRARIES_PATHLIST
++ '[' yes = yes ']'
++ path_fragment=/usr/src/GNUstep/Libraries
++ case "$GNUSTEP_HOST_OS" in
++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']'
++ echo :/usr/src/GNUstep/Libraries:/usr/lib64:
++ grep -v :/usr/src/GNUstep/Libraries:
++ export LD_LIBRARY_PATH
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset path_fragment
++ unset GNUSTEP_LIBRARIES_PATHLIST
++ case "$GNUSTEP_HOST_OS" in
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep no
++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib64/GNUstep:/usr/src/GNUstep
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_LIBRARY_PATHLIST
++ path_fragment=/usr/lib64/GNUstep/Libraries/Java
++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']'
++ grep -v :/usr/lib64/GNUstep/Libraries/Java:
++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java:
++ path_fragment=/usr/lib64/GNUstep/Libraries/Guile
++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']'
++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile:
++ grep -v :/usr/lib64/GNUstep/Libraries/Guile:
++ for dir in $GNUSTEP_LIBRARY_PATHLIST
++ path_fragment=/usr/src/GNUstep/Libraries/Java
++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']'
++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java:
++ grep -v :/usr/src/GNUstep/Libraries/Java:
++ path_fragment=/usr/src/GNUstep/Libraries/Guile
++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']'
++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile:
++ grep -v :/usr/src/GNUstep/Libraries/Guile:
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset path_fragment
++ unset GNUSTEP_LIBRARY_PATHLIST
++ export CLASSPATH
++ export GUILE_LOAD_PATH
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no
++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_INFO_PATHLIST
++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']'
++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info::
++ grep -v :/usr/share/info:
++ for dir in $GNUSTEP_INFO_PATHLIST
++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']'
++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info::
++ grep -v :/usr/src/GNUstep/Documentation/info:
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset GNUSTEP_INFO_PATHLIST
++ export INFOPATH
++ '[' -n '' ']'
++ '[' no = yes ']'
++ unset GNUSTEP_MAKE_STRICT_V2_MODE
++ '[' -z '' ']'
++ unset GNUSTEP_CONFIG_FILE
++ unset GNUSTEP_KEEP_CONFIG_FILE
++ '[' -z '' ']'
++ unset GNUSTEP_USER_CONFIG_FILE
++ unset GNUSTEP_KEEP_USER_CONFIG_FILE
++ unset GNUSTEP_USER_DEFAULTS_DIR
++ unset GNUSTEP_SYSTEM_APPS
++ unset GNUSTEP_SYSTEM_ADMIN_APPS
++ unset GNUSTEP_SYSTEM_WEB_APPS
++ unset GNUSTEP_SYSTEM_TOOLS
++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS
++ unset GNUSTEP_SYSTEM_LIBRARY
++ unset GNUSTEP_SYSTEM_HEADERS
++ unset GNUSTEP_SYSTEM_LIBRARIES
++ unset GNUSTEP_SYSTEM_DOC
++ unset GNUSTEP_SYSTEM_DOC_MAN
++ unset GNUSTEP_SYSTEM_DOC_INFO
++ unset GNUSTEP_NETWORK_APPS
++ unset GNUSTEP_NETWORK_ADMIN_APPS
++ unset GNUSTEP_NETWORK_WEB_APPS
++ unset GNUSTEP_NETWORK_TOOLS
++ unset GNUSTEP_NETWORK_ADMIN_TOOLS
++ unset GNUSTEP_NETWORK_LIBRARY
++ unset GNUSTEP_NETWORK_HEADERS
++ unset GNUSTEP_NETWORK_LIBRARIES
++ unset GNUSTEP_NETWORK_DOC
++ unset GNUSTEP_NETWORK_DOC_MAN
++ unset GNUSTEP_NETWORK_DOC_INFO
++ unset GNUSTEP_LOCAL_APPS
++ unset GNUSTEP_LOCAL_ADMIN_APPS
++ unset GNUSTEP_LOCAL_WEB_APPS
++ unset GNUSTEP_LOCAL_TOOLS
++ unset GNUSTEP_LOCAL_ADMIN_TOOLS
++ unset GNUSTEP_LOCAL_LIBRARY
++ unset GNUSTEP_LOCAL_HEADERS
++ unset GNUSTEP_LOCAL_LIBRARIES
++ unset GNUSTEP_LOCAL_DOC
++ unset GNUSTEP_LOCAL_DOC_MAN
++ unset GNUSTEP_LOCAL_DOC_INFO
++ unset GNUSTEP_USER_APPS
++ unset GNUSTEP_USER_ADMIN_APPS
++ unset GNUSTEP_USER_WEB_APPS
++ unset GNUSTEP_USER_TOOLS
++ unset GNUSTEP_USER_ADMIN_TOOLS
++ unset GNUSTEP_USER_LIBRARY
++ unset GNUSTEP_USER_HEADERS
++ unset GNUSTEP_USER_LIBRARIES
++ unset GNUSTEP_USER_DOC
++ unset GNUSTEP_USER_DOC_MAN
++ unset GNUSTEP_USER_DOC_INFO
++ unset GNUSTEP_SYSTEM_USERS_DIR
++ unset GNUSTEP_LOCAL_USERS_DIR
++ unset GNUSTEP_NETWORK_USERS_DIR
++ '[' -n '' ']'
+ make -j8 messages=yes debug=yes strip=no shared=yes 'CONFIG_SYSTEM_LIBS=-lgnustep-base -lobjc2'
make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help.
make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
Making build-headers in subprojects of framework BioCocoa...
Making build-headers in subprojects of subproject BCFoundation...
Making build-headers for subproject BCAlignment...
/usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers
/bin/install -c -p  -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h
/bin/install -c -p  -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h
/bin/install -c -p  -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h
Making build-headers for subproject BCAnalysis...
/bin/install -c -p  -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h
/bin/install -c -p  -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h
Making build-headers for subproject BCGeneExpression...
/bin/install -c -p  -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h
/bin/install -c -p  -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h
/bin/install -c -p  -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h
/bin/install -c -p  -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h
Making build-headers for subproject BCGeneticCode...
/bin/install -c -p  -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h
/bin/install -c -p  -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h
/bin/install -c -p  -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h
/bin/install -c -p  -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h
Making build-headers for subproject BCProteinStructure...
/bin/install -c -p  -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h
/bin/install -c -p  -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h
/bin/install -c -p  -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h
/bin/install -c -p  -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h
/bin/install -c -p  -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h
/bin/install -c -p  -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h
Making build-headers for subproject BCSequence...
/bin/install -c -p  -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h
/bin/install -c -p  -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h
/bin/install -c -p  -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h
/bin/install -c -p  -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h
Making build-headers for subproject BCSequenceIO...
/bin/install -c -p  -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h
/bin/install -c -p  -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h
/bin/install -c -p  -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h
/bin/install -c -p  -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h
Making build-headers for subproject BCSymbol...
/bin/install -c -p  -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h
/bin/install -c -p  -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h
/bin/install -c -p  -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h
/bin/install -c -p  -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h
/bin/install -c -p  -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h
/bin/install -c -p  -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h
Making build-headers for subproject BCTools...
/bin/install -c -p  -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h
/bin/install -c -p  -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h
/bin/install -c -p  -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h
/bin/install -c -p  -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h
/bin/install -c -p  -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h
/bin/install -c -p  -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h
/bin/install -c -p  -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h
/bin/install -c -p  -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h
/bin/install -c -p  -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h
Making build-headers for subproject BCUtils...
/bin/install -c -p  -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h
/bin/install -c -p  -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h
/bin/install -c -p  -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h
Making build-headers for subproject BCFoundation...
/bin/install -c -p  -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h
/bin/install -c -p  -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h
/bin/install -c -p  -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h
/bin/install -c -p  -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h
Making build-headers for framework BioCocoa...
/usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \
touch derived_src/.stamp
/usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources
cd ./BioCocoa.framework/Versions; \
rm -f Current; \
ln -s 2 Current
cd ./BioCocoa.framework; \
  if [ ! -h "Resources" ]; then \
    rm -f Resources; \
    ln -s Versions/Current/Resources Resources; \
  fi; \
  if [ ! -h "Headers" ]; then \
    rm -f Headers; \
    ln -s Versions/Current/Headers Headers; \
  fi
cd ./derived_src; \
  if [ ! -h "BioCocoa" ]; then \
    rm -f ./BioCocoa; \
    ln -s ../BioCocoa.framework/Headers \
                    ./BioCocoa; \
  fi
make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
Making all in subprojects of framework BioCocoa...
gmake[1]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[1]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation'
Making all in subprojects of subproject BCFoundation...
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment'
Making all for subproject BCAlignment...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/
gcc BCSequenceAlignment.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCAlignment.obj/BCSequenceAlignment.m.o
gcc BCScoreMatrix.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCAlignment.obj/BCScoreMatrix.m.o
gcc BCPairwiseAlignment.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCAlignment.obj/BCPairwiseAlignment.m.o obj/BCAlignment.obj/BCScoreMatrix.m.o obj/BCAlignment.obj/BCSequenceAlignment.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis'
Making all for subproject BCAnalysis...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAnalysis.obj/
gcc BCSuffixArray.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCAnalysis.obj/BCSuffixArray.m.o
BCSuffixArray.m: In function '-[BCSuffixArray dumpSuffixArray]':
BCSuffixArray.m:896:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&sa1Offset, sizeof(int), 1, sa1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m:897:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&sa1File, sizeof(int), 1, sa1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m:932:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&sa1Offset, sizeof(int), 1, sa1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m:933:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&sa1File, sizeof(int), 1, sa1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m: In function '-[BCSuffixArrayUnionEnumerator nextSuffixPosition:sequence:suffixArray:]':
BCSuffixArray.m:1464:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&(suffixPositions[i]), sizeof(int), 1, arrayFiles[i]);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m:1465:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&(suffixSequences[i]), sizeof(int), 1, arrayFiles[i]);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m:1598:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&(suffixPositions[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSuffixArray.m:1599:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&(suffixSequences[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc BCMCP.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCAnalysis.obj/BCMCP.m.o
BCMCP.m: In function '+[BCMCP mcpToFile:suffixArray:withSuffixArray:lowerBound:]':
BCMCP.m:160:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&sa1Offset, sizeof(int), 1, sa1);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:161:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&sa1File, sizeof(int), 1, sa1);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:163:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&sa2Offset, sizeof(int), 1, sa2);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:164:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&sa2File, sizeof(int), 1, sa2);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:334:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&sa2Offset, sizeof(int), 1, sa2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:335:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&sa2File, sizeof(int), 1, sa2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:352:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&sa1Offset, sizeof(int), 1, sa1);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:353:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&sa1File, sizeof(int), 1, sa1);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:358:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&sa2Offset, sizeof(int), 1, sa2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:359:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&sa2File, sizeof(int), 1, sa2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:366:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&sa2Offset, sizeof(int), 1, sa2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:367:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&sa2File, sizeof(int), 1, sa2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m: In function '-[BCMCP intersectToFile:withMCP:]':
BCMCP.m:486:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp1Length, sizeof(int), 1, mcp1);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:487:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp1NumFiles, sizeof(int), 1, mcp1);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:489:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:490:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp1File[i]), sizeof(int), 1, mcp1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:514:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp2Length, sizeof(int), 1, mcp2);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:515:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp2NumFiles, sizeof(int), 1, mcp2);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:517:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:518:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp2File[i]), sizeof(int), 1, mcp2);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:735:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&mcp1Length, sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:736:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&mcp1NumFiles, sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:738:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:739:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&(mcp1File[i]), sizeof(int), 1, mcp1);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:762:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&mcp2Length, sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:763:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&mcp2NumFiles, sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:765:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:766:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
           fread(&(mcp2File[i]), sizeof(int), 1, mcp2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m: In function '-[BCMCP unionToFile:withMCP:]':
BCMCP.m:910:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp1Length, sizeof(int), 1, mcp1);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:911:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp1NumFiles, sizeof(int), 1, mcp1);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:913:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:914:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp1File[i]), sizeof(int), 1, mcp1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:936:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp2Length, sizeof(int), 1, mcp2);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:937:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcp2NumFiles, sizeof(int), 1, mcp2);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:939:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:940:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcp2File[i]), sizeof(int), 1, mcp2);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1093:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp1Length, sizeof(int), 1, mcp1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1094:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp1NumFiles, sizeof(int), 1, mcp1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1096:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1097:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp1File[i]), sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1123:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp2Length, sizeof(int), 1, mcp2);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1124:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp2NumFiles, sizeof(int), 1, mcp2);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1126:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1127:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp2File[i]), sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1167:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp1Length, sizeof(int), 1, mcp1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1168:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp1NumFiles, sizeof(int), 1, mcp1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1170:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1171:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp1File[i]), sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1186:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp2Length, sizeof(int), 1, mcp2);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1187:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp2NumFiles, sizeof(int), 1, mcp2);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1189:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1190:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp2File[i]), sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1222:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp2Length, sizeof(int), 1, mcp2);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1223:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp2NumFiles, sizeof(int), 1, mcp2);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1225:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1226:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp2File[i]), sizeof(int), 1, mcp2);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1239:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp1Length, sizeof(int), 1, mcp1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1240:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&mcp1NumFiles, sizeof(int), 1, mcp1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1242:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1243:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&(mcp1File[i]), sizeof(int), 1, mcp1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m: In function '-[BCMCP trimToFile:]':
BCMCP.m:1272:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&mcpLength, sizeof(int), 1, mcp);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1273:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&mcpNumFiles, sizeof(int), 1, mcp);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1275:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&(mcpOffset[i]), sizeof(int), 1, mcp);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1276:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&(mcpFile[i]), sizeof(int), 1, mcp);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m: In function '-[BCMCP outputFormat:withMinimumLength:]':
BCMCP.m:1481:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcpLength, sizeof(int), 1, mcp);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1482:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
   fread(&mcpNumFiles, sizeof(int), 1, mcp);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1485:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcpOffset[i]), sizeof(int), 1, mcp);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1486:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&(mcpFile[i]), sizeof(int), 1, mcp);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1603:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&mcpLength, sizeof(int), 1, mcp);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1604:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&mcpNumFiles, sizeof(int), 1, mcp);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1606:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&(mcpOffset[i]), sizeof(int), 1, mcp);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCMCP.m:1607:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&(mcpFile[i]), sizeof(int), 1, mcp);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCAnalysis.obj/BCMCP.m.o obj/BCAnalysis.obj/BCSuffixArray.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression'
Making all for subproject BCGeneExpression...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneExpression.obj/
gcc BCPlatform.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneExpression.obj/BCPlatform.m.o
gcc BCSample.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneExpression.obj/BCSample.m.o
gcc BCParseSOFT.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneExpression.obj/BCParseSOFT.m.o
gcc BCSeries.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneExpression.obj/BCSeries.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneExpression.obj/BCSeries.m.o obj/BCGeneExpression.obj/BCSample.m.o obj/BCGeneExpression.obj/BCPlatform.m.o obj/BCGeneExpression.obj/BCParseSOFT.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode'
Making all for subproject BCGeneticCode...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneticCode.obj/
gcc BCCodon.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneticCode.obj/BCCodon.m.o
gcc BCCodonDNA.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneticCode.obj/BCCodonDNA.m.o
gcc BCCodonRNA.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneticCode.obj/BCCodonRNA.m.o
gcc BCGeneticCode.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCGeneticCode.obj/BCGeneticCode.m.o
BCGeneticCode.m: In function '+[BCGeneticCode priv:createCodonArraysFromDictionary:]':
BCGeneticCode.m:221:23: warning: variable 'RNACodon' set but not used [-Wunused-but-set-variable]
     BCCodon *aCodon, *RNACodon;
                       ^~~~~~~~
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneticCode.obj/BCCodonDNA.m.o obj/BCGeneticCode.obj/BCCodon.m.o obj/BCGeneticCode.obj/BCCodonRNA.m.o obj/BCGeneticCode.obj/BCGeneticCode.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure'
Making all for subproject BCProteinStructure...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCProteinStructure.obj/
gcc BCResidue.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCProteinStructure.obj/BCResidue.m.o
gcc BCProteinStructure.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCProteinStructure.obj/BCProteinStructure.m.o
gcc BCChain.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCProteinStructure.obj/BCChain.m.o
gcc BCSequenceStructure.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCProteinStructure.obj/BCSequenceStructure.m.o
gcc BCSecondaryStructure.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o
gcc BCAtom.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCProteinStructure.obj/BCAtom.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCProteinStructure.obj/BCAtom.m.o obj/BCProteinStructure.obj/BCProteinStructure.m.o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o obj/BCProteinStructure.obj/BCChain.m.o obj/BCProteinStructure.obj/BCResidue.m.o obj/BCProteinStructure.obj/BCSequenceStructure.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence'
Making all for subproject BCSequence...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequence.obj/
gcc BCSequenceArray.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequence.obj/BCSequenceArray.m.o
gcc BCAnnotation.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequence.obj/BCAnnotation.m.o
gcc BCSequenceCodon.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequence.obj/BCSequenceCodon.m.o
BCSequenceCodon.m: In function '-[BCSequenceCodon openReadingFramesLongerThanCutoff:]':
BCSequenceCodon.m:301:16: warning: 'inORF' may be used uninitialized in this function [-Wmaybe-uninitialized]
             if ( inORF )
                ^
gcc BCSequence.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequence.obj/BCSequence.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCSequence.obj/BCAnnotation.m.o obj/BCSequence.obj/BCSequence.m.o obj/BCSequence.obj/BCSequenceArray.m.o obj/BCSequence.obj/BCSequenceCodon.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO'
Making all for subproject BCSequenceIO...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequenceIO.obj/
gcc BCSequenceWriter.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequenceIO.obj/BCSequenceWriter.m.o
gcc BCCachedSequenceFile.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o
gcc BCCachedFastaFile.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o
BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]':
BCCachedFastaFile.m:58:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&c, sizeof(char), 1, g1);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCCachedFastaFile.m:73:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&c, sizeof(char), 1, g1);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCCachedFastaFile.m:76:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&c, sizeof(char), 1, g1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCCachedFastaFile.m:97:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
         fread(&c, sizeof(char), 1, g1);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCCachedFastaFile.m: In function '-[BCCachedFastaFile symbols:ForCurrentSequenceAtPosition:ofLength:]':
BCCachedFastaFile.m:149:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
     fread(&c, sizeof(char), 1, fileHandle);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]':
BCCachedFastaFile.m:104:3: warning: 'filePos' may be used uninitialized in this function [-Wmaybe-uninitialized]
   [d setObject: [NSNumber numberWithUnsignedLongLong: (filePos - 1)] forKey: @"end"];
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc BCSequenceReader.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSequenceIO.obj/BCSequenceReader.m.o
BCSequenceReader.m: In function '-[BCSequenceReader readFileUsingText:]':
BCSequenceReader.m:167:3: warning: no '-initWithRTF:documentAttributes:' method found
   NSAttributedString *rtfstring = [[NSAttributedString alloc] initWithRTF: [entryString dataUsingEncoding: NSUTF8StringEncoding] documentAttributes: nil];
   ^~~~~~~~~~~~~~~~~~
BCSequenceReader.m:167:3: warning: (Messages without a matching method signature
BCSequenceReader.m:167:3: warning: will be assumed to return 'id' and accept
BCSequenceReader.m:167:3: warning: '...' as arguments.)
BCSequenceReader.m: In function '-[BCSequenceReader readMacVectorFile:]':
BCSequenceReader.m:651:18: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable]
  NSMutableArray *annotationsArray;
                  ^~~~~~~~~~~~~~~~
BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]':
BCSequenceReader.m:798:3: warning: passing argument 2 of 'scanUpToString:intoString:' from incompatible pointer type [-Wincompatible-pointer-types]
   [lineScanner scanUpToString:@" " intoString: nil];
   ^
BCSequenceReader.m:798:3: note: expected 'struct NSString **' but argument is of type 'id'
BCSequenceReader.m: In function '-[BCSequenceReader readPhylipFile:]':
BCSequenceReader.m:1113:31: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable]
  NSMutableArray *linesArray, *annotationsArray, *namesArray, *sequenceArray;
                               ^~~~~~~~~~~~~~~~
BCSequenceReader.m: In function '-[BCSequenceReader readSwissProtFile:]':
BCSequenceReader.m:421:2: warning: 'sequenceString' may be used uninitialized in this function [-Wmaybe-uninitialized]
  if ( [sequenceString length])
       ~~~~~~~~~~~~~~~~~~~~~~~
BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]':
BCSequenceReader.m:822:3: warning: 'sequenceRange.location' may be used uninitialized in this function [-Wmaybe-uninitialized]
   sequenceString = [line substringFromIndex: sequenceRange.location];
                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BCSequenceReader.m: In function '-[BCSequenceReader readFASTQFile:]':
BCSequenceReader.m:1310:6: warning: 'seqData' may be used uninitialized in this function [-Wmaybe-uninitialized]
      BCSequence *newSequence = [[BCSequence alloc] initWithData: seqData symbolSet: nil];
                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCSequenceIO.obj/BCSequenceReader.m.o obj/BCSequenceIO.obj/BCSequenceWriter.m.o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol'
Making all for subproject BCSymbol...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSymbol.obj/
gcc BCNucleotide.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSymbol.obj/BCNucleotide.m.o
gcc BCSymbol.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSymbol.obj/BCSymbol.m.o
gcc BCAminoAcid.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSymbol.obj/BCAminoAcid.m.o
gcc BCNucleotideDNA.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSymbol.obj/BCNucleotideDNA.m.o
gcc BCNucleotideRNA.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSymbol.obj/BCNucleotideRNA.m.o
gcc BCSymbolSet.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCSymbol.obj/BCSymbolSet.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCSymbol.obj/BCAminoAcid.m.o obj/BCSymbol.obj/BCNucleotide.m.o obj/BCSymbol.obj/BCSymbol.m.o obj/BCSymbol.obj/BCNucleotideDNA.m.o obj/BCSymbol.obj/BCNucleotideRNA.m.o obj/BCSymbol.obj/BCSymbolSet.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools'
Making all for subproject BCTools...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCTools.obj/
gcc BCToolSymbolCounter.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolSymbolCounter.m.o
gcc BCToolDigest.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolDigest.m.o
gcc BCToolHydropathyCalculator.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolHydropathyCalculator.m.o
gcc BCSequenceTool.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCSequenceTool.m.o
gcc BCToolSequenceFinder.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolSequenceFinder.m.o
gcc BCToolMassCalculator.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolMassCalculator.m.o
gcc BCToolComplement.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolComplement.m.o
gcc BCToolTranslator.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolTranslator.m.o
gcc BCToolTranslatorDNA.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCTools.obj/BCToolTranslatorDNA.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCTools.obj/BCSequenceTool.m.o obj/BCTools.obj/BCToolDigest.m.o obj/BCTools.obj/BCToolHydropathyCalculator.m.o obj/BCTools.obj/BCToolMassCalculator.m.o obj/BCTools.obj/BCToolComplement.m.o obj/BCTools.obj/BCToolSequenceFinder.m.o obj/BCTools.obj/BCToolSymbolCounter.m.o obj/BCTools.obj/BCToolTranslator.m.o obj/BCTools.obj/BCToolTranslatorDNA.m.o ;
gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils'
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj
gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils'
Making all for subproject BCUtils...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCUtils.obj/
gcc BCUtilData.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCUtils.obj/BCUtilData.m.o
gcc BCUtilStrings.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCUtils.obj/BCUtilStrings.m.o
BCUtilStrings.m: In function '-[NSString(StringAdditions) stringBeginsWithTwoNumbers]':
BCUtilStrings.m:98:2: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types]
  if ([scanner scanInt:nil])
  ^~
BCUtilStrings.m:98:2: note: expected 'int *' but argument is of type 'id'
BCUtilStrings.m:100:3: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types]
   if ([scanner scanInt:nil])
   ^~
BCUtilStrings.m:100:3: note: expected 'int *' but argument is of type 'id'
gcc BCDataMatrix.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCUtils.obj/BCDataMatrix.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCUtils.obj/BCDataMatrix.m.o obj/BCUtils.obj/BCUtilData.m.o obj/BCUtils.obj/BCUtilStrings.m.o ;
Making all for subproject BCFoundation...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCFoundation.obj/
gcc BCStringDefinitions.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCFoundation.obj/BCStringDefinitions.m.o
gcc BCPreferences.m -c \
      -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \
       -o obj/BCFoundation.obj/BCPreferences.m.o
gcc -nostdlib -r       -shared-libgcc  -pthread -fexceptions -o ./obj/subproject.o obj/BCFoundation.obj/BCStringDefinitions.m.o obj/BCFoundation.obj/BCPreferences.m.o BCAlignment/obj/subproject.o BCAnalysis/obj/subproject.o BCGeneExpression/obj/subproject.o BCGeneticCode/obj/subproject.o BCProteinStructure/obj/subproject.o BCSequence/obj/subproject.o BCSequenceIO/obj/subproject.o BCSymbol/obj/subproject.o BCTools/obj/subproject.o BCUtils/obj/subproject.o ;
Making all for framework BioCocoa...
cd .; \
/usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BioCocoa.obj/
classes=""; \
for object_file in   ./BCFoundation/obj/subproject.o __dummy__; do \
  if [ "$object_file" != "__dummy__" ]; then \
    sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \
    classes="$classes $sym"; \
  fi; \
done; \
classlist=""; \
classarray=""; \
for f in $classes __dummy__ ; do \
  if [ "$f" != "__dummy__" ]; then \
    if [ "$classlist" = "" ]; then \
      classlist="@\"$f\""; \
      classarray="(\"$f\""; \
    else \
      classlist="$classlist, @\"$f\""; \
      classarray="$classarray, \"$f\""; \
    fi; \
  fi; \
done; \
if [ "$classlist" = "" ]; then \
  classlist="NULL"; \
  classarray="()"; \
else \
  classlist="$classlist, NULL"; \
  classarray="$classarray)"; \
fi; \
echo "$classarray" > ./derived_src/BioCocoa-class-list; \
echo "#include <Foundation/NSObject.h>" > derived_src/NSFramework_BioCocoa.m; \
echo "#include <Foundation/NSString.h>" > derived_src/NSFramework_BioCocoa.m; \
echo "@interface NSFramework_BioCocoa : NSObject" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_BioCocoa.m; \
echo "@end" >> derived_src/NSFramework_BioCocoa.m; \
echo "@implementation NSFramework_BioCocoa" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *)frameworkPath { return @\"/usr/lib64/GNUstep/Frameworks\"; }" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *)frameworkVersion { return @\"2\"; }" >> derived_src/NSFramework_BioCocoa.m; \
echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_BioCocoa.m; \
echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_BioCocoa.m;\
echo "@end" >> derived_src/NSFramework_BioCocoa.m
gcc derived_src/NSFramework_BioCocoa.m -c -MMD -MP   -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0  -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1  -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread  -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime  -fconstant-string-class=NSConstantString -fexec-charset=UTF-8   -I./derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include   -I/usr/include -I/usr/include -I/usr/include  -I/usr/include/libxml2  -o obj/BioCocoa.obj/NSFramework_BioCocoa.o
\
gcc  -shared -Wl,-soname,libBioCocoa.so.2  -rdynamic     -shared-libgcc  -pthread -fexceptions -o ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 obj/BioCocoa.obj/NSFramework_BioCocoa.o BCFoundation/obj/subproject.o      -L/usr/src/GNUstep/Libraries -L/usr/lib64   -L/usr/lib64 -L/usr/lib64 -L/usr/lib64    -lgnustep-base -lobjc2  && (cd ./BioCocoa.framework/Versions/2/.; rm -f libBioCocoa.so; if [ "libBioCocoa.so.2" != "libBioCocoa.so.2.2.2" ]; then rm -f libBioCocoa.so.2; ln -s libBioCocoa.so.2.2.2 libBioCocoa.so.2; fi; ln -s libBioCocoa.so.2 libBioCocoa.so; ) || rm -f ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 ; \
(cd ./BioCocoa.framework/Versions/2/.; \
  rm -f BioCocoa; \
  ln -s libBioCocoa.so BioCocoa) \

/usr/bin/ld.default: BCFoundation/obj/subproject.o: in function `_i_BCSuffixArray__constructFromSequenceArray_strand_':
/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis/BCSuffixArray.m:513: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'
for f in BCFoundation/BCSymbol/SymbolTemplates/nucleotides.plist BCFoundation/BCSymbol/SymbolTemplates/aminoacids.plist; do \
  if [ -f .//$f -o -d .//$f ]; then \
    cp -fr .//$f ./BioCocoa.framework/Versions/2/Resources/; \
  else \
    echo "Warning: .//$f not found - ignoring"; \
  fi; \
done
for subproject in BCFoundation; do \
  if [ -d $subproject/Resources/Subproject ]; then \
    for f in $subproject/Resources/Subproject/*; do \
      if [ $f != $subproject'/Resources/Subproject/*' ]; then \
        cp -fr $f ./BioCocoa.framework/Versions/2/Resources/; \
      fi; \
    done; \
  fi; \
done
(echo "{"; echo '  NOTE = "Automatically generated, do not edit!";'; \
  echo "  NSExecutable = \"BioCocoa\";"; \
  echo "  NSMainNibFile = \"\";"; \
  echo "  NSPrincipalClass = \"BioCocoa\";"; \
  echo "  Classes = "; \
  cat ./derived_src/BioCocoa-class-list; \
  echo "  ;"; \
  echo "}") >BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist
if [ -r "" ]; then \
   plmerge BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist ; \
 fi
cd ./BioCocoa.framework/.; \
rm -f BioCocoa libBioCocoa.so; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./BioCocoa short` \
        BioCocoa; \
ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \
                            Versions/Current/./libBioCocoa.so short` \
        libBioCocoa.so
+ exit 0
Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.95273
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ /bin/chmod -Rf u+rwX -- /usr/src/tmp/gnustep-BioCocoa-buildroot
+ :
+ /bin/rm -rf -- /usr/src/tmp/gnustep-BioCocoa-buildroot
+ PATH=/usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+ cd gnustep-BioCocoa-2.2.2
+ . /usr/share/GNUstep/Makefiles/GNUstep.sh
++ '[' -n '' ']'
++ GNUSTEP_MAKE_STRICT_V2_MODE=no
++ '[' -z '' ']'
++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf
++ '[' -z '' ']'
++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf
++ '[' -f /etc/GNUstep/GNUstep.conf ']'
++ . /etc/GNUstep/GNUstep.conf
+++ GNUSTEP_SYSTEM_ROOT=/usr
+++ GNUSTEP_LOCAL_ROOT=/usr
+++ GNUSTEP_NETWORK_ROOT=/usr
+++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf
+++ GNUSTEP_USER_DIR=GNUstep
+++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults
+++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles
+++ GNUSTEP_SYSTEM_USERS_DIR=/home
+++ GNUSTEP_NETWORK_USERS_DIR=/home
+++ GNUSTEP_LOCAL_USERS_DIR=/home
+++ GNUSTEP_SYSTEM_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib64/GNUstep/WebApplications
+++ GNUSTEP_SYSTEM_TOOLS=/usr/bin
+++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin
+++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib64/GNUstep
+++ GNUSTEP_SYSTEM_HEADERS=/usr/include
+++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib64
+++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep
+++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man
+++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info
+++ GNUSTEP_NETWORK_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib64/GNUstep/WebApplications
+++ GNUSTEP_NETWORK_TOOLS=/usr/bin
+++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin
+++ GNUSTEP_NETWORK_LIBRARY=/usr/lib64/GNUstep
+++ GNUSTEP_NETWORK_HEADERS=/usr/include
+++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib64
+++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep
+++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man
+++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info
+++ GNUSTEP_LOCAL_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib64/GNUstep/Applications
+++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib64/GNUstep/WebApplications
+++ GNUSTEP_LOCAL_TOOLS=/usr/bin
+++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin
+++ GNUSTEP_LOCAL_LIBRARY=/usr/lib64/GNUstep
+++ GNUSTEP_LOCAL_HEADERS=/usr/include
+++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib64
+++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep
+++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man
+++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info
+++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications
+++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin
+++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications
+++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools
+++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin
+++ GNUSTEP_USER_DIR_LIBRARY=GNUstep
+++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers
+++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries
+++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation
+++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man
+++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info
++ GNUSTEP_HOME=/usr/src
++ '[' -n .GNUstep.conf ']'
++ case "$GNUSTEP_USER_CONFIG_FILE" in
++ '[' -f /usr/src/.GNUstep.conf ']'
++ '[' no = yes ']'
++ '[' -z /usr ']'
++ '[' -z /usr ']'
++ '[' -z /usr ']'
++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT
++ '[' no = yes ']'
++ GNUSTEP_FLATTENED=yes
++ export GNUSTEP_FLATTENED
++ GNUSTEP_IS_FLATTENED=yes
++ '[' -z gnu-gnu-gnu ']'
++ '[' '!' no = yes ']'
++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO
++ '[' -z /usr/share/GNUstep/Makefiles ']'
++ export GNUSTEP_MAKEFILES
++ '[' no = yes ']'
++ '[' -z GNUstep ']'
++ case "$GNUSTEP_USER_DIR" in
++ GNUSTEP_USER_ROOT=/usr/src/GNUstep
++ unset GNUSTEP_USER_DIR
++ export GNUSTEP_USER_ROOT
++ '[' -z '' ']'
++ GNUSTEP_HOST=
++ GNUSTEP_HOST_CPU=
++ GNUSTEP_HOST_VENDOR=alt
++ GNUSTEP_HOST_OS=linux-gnu
++ '[' -z '' ']'
+++ pwd
++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2
++ cd /tmp
+++ /usr/share/GNUstep/Makefiles/config.guess
++ GNUSTEP_HOST=x86_64-pc-linux-gnu
+++ /usr/share/GNUstep/Makefiles/config.sub x86_64-pc-linux-gnu
++ GNUSTEP_HOST=x86_64-pc-linux-gnu
++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2
++ unset tmpdir
++ '[' -z '' ']'
+++ /usr/share/GNUstep/Makefiles/cpu.sh x86_64-pc-linux-gnu
++ GNUSTEP_HOST_CPU=x86_64
+++ /usr/share/GNUstep/Makefiles/clean_cpu.sh x86_64
++ GNUSTEP_HOST_CPU=x86_64
++ '[' -z alt ']'
++ '[' -z linux-gnu ']'
++ '[' '!' no = yes ']'
++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS
++ . /usr/share/GNUstep/Makefiles/filesystem.sh
+++ '[' -z /home ']'
+++ '[' -z /home ']'
+++ '[' -z /home ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/WebApplications ']'
+++ '[' -z /usr/bin ']'
+++ '[' -z /usr/sbin ']'
+++ '[' -z /usr/lib64/GNUstep ']'
+++ '[' -z /usr/include ']'
+++ '[' -z /usr/lib64 ']'
+++ '[' -z /usr/share/doc/GNUstep ']'
+++ '[' -z /usr/share/man ']'
+++ '[' -z /usr/share/info ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/WebApplications ']'
+++ '[' -z /usr/bin ']'
+++ '[' -z /usr/sbin ']'
+++ '[' -z /usr/lib64/GNUstep ']'
+++ '[' -z /usr/include ']'
+++ '[' -z /usr/lib64 ']'
+++ '[' -z /usr/share/doc/GNUstep ']'
+++ '[' -z /usr/share/man ']'
+++ '[' -z /usr/share/info ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/Applications ']'
+++ '[' -z /usr/lib64/GNUstep/WebApplications ']'
+++ '[' -z /usr/bin ']'
+++ '[' -z /usr/sbin ']'
+++ '[' -z /usr/lib64/GNUstep ']'
+++ '[' -z /usr/include ']'
+++ '[' -z /usr/lib64 ']'
+++ '[' -z /usr/share/doc/GNUstep ']'
+++ '[' -z /usr/share/man ']'
+++ '[' -z /usr/share/info ']'
+++ '[' -z GNUstep/Applications ']'
+++ '[' -z GNUstep/Applications/Admin ']'
+++ '[' -z GNUstep/WebApplications ']'
+++ '[' -z GNUstep/Tools ']'
+++ '[' -z GNUstep/Tools/Admin ']'
+++ '[' -z GNUstep ']'
+++ '[' -z GNUstep/Headers ']'
+++ '[' -z GNUstep/Libraries ']'
+++ '[' -z GNUstep/Documentation ']'
+++ '[' -z GNUstep/Documentation/man ']'
+++ '[' -z GNUstep/Documentation/info ']'
+++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in
+++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in
+++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in
+++ case "$GNUSTEP_USER_DIR_APPS" in
+++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications
+++ unset GNUSTEP_USER_DIR_APPS
+++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in
+++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin
+++ unset GNUSTEP_USER_DIR_ADMIN_APPS
+++ case "$GNUSTEP_USER_DIR_WEB_APPS" in
+++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications
+++ unset GNUSTEP_USER_DIR_WEB_APPS
+++ case "$GNUSTEP_USER_DIR_TOOLS" in
+++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools
+++ unset GNUSTEP_USER_DIR_TOOLS
+++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in
+++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin
+++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS
+++ case "$GNUSTEP_USER_DIR_LIBRARY" in
+++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep
+++ unset GNUSTEP_USER_DIR_LIBRARY
+++ case "$GNUSTEP_USER_DIR_HEADERS" in
+++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers
+++ unset GNUSTEP_USER_DIR_HEADERS
+++ case "$GNUSTEP_USER_DIR_LIBRARIES" in
+++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries
+++ unset GNUSTEP_USER_DIR_LIBRARIES
+++ case "$GNUSTEP_USER_DIR_DOC" in
+++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation
+++ unset GNUSTEP_USER_DIR_DOC
+++ case "$GNUSTEP_USER_DIR_DOC_MAN" in
+++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man
+++ unset GNUSTEP_USER_DIR_DOC_MAN
+++ case "$GNUSTEP_USER_DIR_DOC_INFO" in
+++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info
+++ unset GNUSTEP_USER_DIR_DOC_INFO
++ unset GNUSTEP_HOME
++ fixup_paths=no
+++ echo /usr/share/GNUstep/Makefiles
+++ sed 's|^[a-zA-Z]:/.*$||'
++ path_check=/usr/share/GNUstep/Makefiles
++ '[' -z /usr/share/GNUstep/Makefiles ']'
++ unset path_check
++ '[' no = yes ']'
++ '[' -z /usr:/usr/src/GNUstep ']'
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no
++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/sbin -a -w /usr/sbin ']'
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/sbin -a -w /usr/sbin ']'
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/sbin -a -w /usr/sbin ']'
++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS"
++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']'
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_TOOLS_PATHLIST
++ '[' yes = no ']'
++ path_fragment=/usr/bin
++ '[' -z /usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']'
++ echo :/usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games:
++ grep -v :/usr/bin:
++ for dir in $GNUSTEP_TOOLS_PATHLIST
++ '[' yes = no ']'
++ path_fragment=/usr/src/GNUstep/Tools
++ '[' -z /usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']'
++ echo :/usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games:
++ grep -v :/usr/src/GNUstep/Tools:
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset path_fragment
++ unset GNUSTEP_TOOLS_PATHLIST
++ export PATH
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib64 /usr/lib64 /usr/lib64 no
++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib64:/usr/src/GNUstep/Libraries
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_LIBRARIES_PATHLIST
++ '[' yes = yes ']'
++ path_fragment=/usr/lib64
++ case "$GNUSTEP_HOST_OS" in
++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']'
++ echo :/usr/src/GNUstep/Libraries:/usr/lib64:
++ grep -v :/usr/lib64:
++ export LD_LIBRARY_PATH
++ for dir in $GNUSTEP_LIBRARIES_PATHLIST
++ '[' yes = yes ']'
++ path_fragment=/usr/src/GNUstep/Libraries
++ case "$GNUSTEP_HOST_OS" in
++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']'
++ echo :/usr/src/GNUstep/Libraries:/usr/lib64:
++ grep -v :/usr/src/GNUstep/Libraries:
++ export LD_LIBRARY_PATH
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset path_fragment
++ unset GNUSTEP_LIBRARIES_PATHLIST
++ case "$GNUSTEP_HOST_OS" in
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep no
++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib64/GNUstep:/usr/src/GNUstep
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_LIBRARY_PATHLIST
++ path_fragment=/usr/lib64/GNUstep/Libraries/Java
++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']'
++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java:
++ grep -v :/usr/lib64/GNUstep/Libraries/Java:
++ path_fragment=/usr/lib64/GNUstep/Libraries/Guile
++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']'
++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile:
++ grep -v :/usr/lib64/GNUstep/Libraries/Guile:
++ for dir in $GNUSTEP_LIBRARY_PATHLIST
++ path_fragment=/usr/src/GNUstep/Libraries/Java
++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']'
++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java:
++ grep -v :/usr/src/GNUstep/Libraries/Java:
++ path_fragment=/usr/src/GNUstep/Libraries/Guile
++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']'
++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile:
++ grep -v :/usr/src/GNUstep/Libraries/Guile:
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset path_fragment
++ unset GNUSTEP_LIBRARY_PATHLIST
++ export CLASSPATH
++ export GUILE_LOAD_PATH
+++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no
++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info
++ old_IFS=' 	
'
++ IFS=:
++ for dir in $GNUSTEP_INFO_PATHLIST
++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']'
++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info::
++ grep -v :/usr/share/info:
++ for dir in $GNUSTEP_INFO_PATHLIST
++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']'
++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info::
++ grep -v :/usr/src/GNUstep/Documentation/info:
++ IFS=' 	
'
++ unset old_IFS
++ unset dir
++ unset GNUSTEP_INFO_PATHLIST
++ export INFOPATH
++ '[' -n '' ']'
++ '[' no = yes ']'
++ unset GNUSTEP_MAKE_STRICT_V2_MODE
++ '[' -z '' ']'
++ unset GNUSTEP_CONFIG_FILE
++ unset GNUSTEP_KEEP_CONFIG_FILE
++ '[' -z '' ']'
++ unset GNUSTEP_USER_CONFIG_FILE
++ unset GNUSTEP_KEEP_USER_CONFIG_FILE
++ unset GNUSTEP_USER_DEFAULTS_DIR
++ unset GNUSTEP_SYSTEM_APPS
++ unset GNUSTEP_SYSTEM_ADMIN_APPS
++ unset GNUSTEP_SYSTEM_WEB_APPS
++ unset GNUSTEP_SYSTEM_TOOLS
++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS
++ unset GNUSTEP_SYSTEM_LIBRARY
++ unset GNUSTEP_SYSTEM_HEADERS
++ unset GNUSTEP_SYSTEM_LIBRARIES
++ unset GNUSTEP_SYSTEM_DOC
++ unset GNUSTEP_SYSTEM_DOC_MAN
++ unset GNUSTEP_SYSTEM_DOC_INFO
++ unset GNUSTEP_NETWORK_APPS
++ unset GNUSTEP_NETWORK_ADMIN_APPS
++ unset GNUSTEP_NETWORK_WEB_APPS
++ unset GNUSTEP_NETWORK_TOOLS
++ unset GNUSTEP_NETWORK_ADMIN_TOOLS
++ unset GNUSTEP_NETWORK_LIBRARY
++ unset GNUSTEP_NETWORK_HEADERS
++ unset GNUSTEP_NETWORK_LIBRARIES
++ unset GNUSTEP_NETWORK_DOC
++ unset GNUSTEP_NETWORK_DOC_MAN
++ unset GNUSTEP_NETWORK_DOC_INFO
++ unset GNUSTEP_LOCAL_APPS
++ unset GNUSTEP_LOCAL_ADMIN_APPS
++ unset GNUSTEP_LOCAL_WEB_APPS
++ unset GNUSTEP_LOCAL_TOOLS
++ unset GNUSTEP_LOCAL_ADMIN_TOOLS
++ unset GNUSTEP_LOCAL_LIBRARY
++ unset GNUSTEP_LOCAL_HEADERS
++ unset GNUSTEP_LOCAL_LIBRARIES
++ unset GNUSTEP_LOCAL_DOC
++ unset GNUSTEP_LOCAL_DOC_MAN
++ unset GNUSTEP_LOCAL_DOC_INFO
++ unset GNUSTEP_USER_APPS
++ unset GNUSTEP_USER_ADMIN_APPS
++ unset GNUSTEP_USER_WEB_APPS
++ unset GNUSTEP_USER_TOOLS
++ unset GNUSTEP_USER_ADMIN_TOOLS
++ unset GNUSTEP_USER_LIBRARY
++ unset GNUSTEP_USER_HEADERS
++ unset GNUSTEP_USER_LIBRARIES
++ unset GNUSTEP_USER_DOC
++ unset GNUSTEP_USER_DOC_MAN
++ unset GNUSTEP_USER_DOC_INFO
++ unset GNUSTEP_SYSTEM_USERS_DIR
++ unset GNUSTEP_LOCAL_USERS_DIR
++ unset GNUSTEP_NETWORK_USERS_DIR
++ '[' -n '' ']'
+ make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help.
make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
Making build-headers in subprojects of framework BioCocoa...
Making build-headers in subprojects of subproject BCFoundation...
Making build-headers for subproject BCAlignment...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCAnalysis...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCGeneExpression...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCGeneticCode...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCProteinStructure...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCSequence...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCSequenceIO...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCSymbol...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCTools...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCUtils...
gmake[3]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for subproject BCFoundation...
gmake[2]: Nothing to be done for 'internal-subproject-build-headers'.
Making build-headers for framework BioCocoa...
Making all in subprojects of framework BioCocoa...
Making all in subprojects of subproject BCFoundation...
Making all for subproject BCAlignment...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCAnalysis...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCGeneExpression...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCGeneticCode...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCProteinStructure...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCSequence...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCSequenceIO...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCSymbol...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCTools...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCUtils...
gmake[4]: Nothing to be done for 'internal-subproject-compile'.
Making all for subproject BCFoundation...
gmake[3]: Nothing to be done for 'internal-subproject-compile'.
Making all for framework BioCocoa...
gmake[2]: Nothing to be done for 'internal-framework-compile'.
 Copying resources into the framework wrapper...
 Copying resources from subprojects into the framework wrapper...
Making install in subprojects of framework BioCocoa...
Making install in subprojects of subproject BCFoundation...
Making install for subproject BCAlignment...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCAnalysis...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCGeneExpression...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCGeneticCode...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCProteinStructure...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCSequence...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCSequenceIO...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCSymbol...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCTools...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCUtils...
gmake[3]: Nothing to be done for 'internal-subproject-install'.
Making install for subproject BCFoundation...
gmake[2]: Nothing to be done for 'internal-subproject-install'.
Making install for framework BioCocoa...
 Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/lib64/GNUstep/Frameworks...
 Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/include...
 Installing framework BioCocoa...
 Installing headers...
make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2'
+ pushd /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64
~/tmp/gnustep-BioCocoa-buildroot/usr/lib64 ~/RPM/BUILD/gnustep-BioCocoa-2.2.2
+ for j in BioCocoa
+ for i in lib$j.so*
+ rm -f libBioCocoa.so
+ mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so ./
+ for k in lib$j.so.*.*
+ ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so
+ rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa
+ ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa
+ for i in lib$j.so*
+ rm -f libBioCocoa.so.2
+ mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 ./
+ for k in lib$j.so.*.*
+ ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2
+ rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa
+ ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa
+ for i in lib$j.so*
+ rm -f libBioCocoa.so.2.2.2
+ mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 ./
+ for k in lib$j.so.*.*
+ ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2
+ rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa
+ ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa
+ popd
~/RPM/BUILD/gnustep-BioCocoa-2.2.2
+ /usr/lib/rpm/brp-alt
Cleaning files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto)
mode of './usr/lib64/libBioCocoa.so.2.2.2' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
Verifying and fixing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig)
Checking contents of files in /usr/src/tmp/gnustep-BioCocoa-buildroot/ (default)
Compressing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto)
Adjusting library links in /usr/src/tmp/gnustep-BioCocoa-buildroot
./usr/lib64:
	libBioCocoa.so.2 -> libBioCocoa.so.2.2.2
Verifying ELF objects in /usr/src/tmp/gnustep-BioCocoa-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=strict)
Hardlinking identical .pyc and .pyo files
Processing files: gnustep-BioCocoa-2.2.2-alt3
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.93192
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gnustep-BioCocoa-2.2.2
+ DOCDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2
+ export DOCDIR
+ rm -rf /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2
+ /bin/mkdir -p /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2
+ cp -prL ChangeLog Authors.txt Publications.txt Readme.txt license.txt /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2
+ chmod -R go-w /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2
+ chmod -R a+rX /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2
+ exit 0
warning: Symlink /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa destination changed from ./Versions/Current/BioCocoa to Versions/Current/BioCocoa
warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib64/libBioCocoa.so.2.2.2
warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib64/libBioCocoa.so.2.2.2
warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib64/libBioCocoa.so.2.2.2
warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib64/libBioCocoa.so.2.2.2
warning: Symlink /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so destination changed from ./Versions/Current/libBioCocoa.so to Versions/Current/libBioCocoa.so
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.1Qthx8
find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa -> ./Versions/Current/BioCocoa is not going to provide anything
find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything
find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything
find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything
find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything
find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so -> ./Versions/Current/libBioCocoa.so is not going to provide anything
find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.oDrOQl
find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services)
Requires: libgnustep-BioCocoa = 2.2.2-alt3, gnustep-back, /usr/lib64/libBioCocoa.so.2.2.2
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Rya3gC
Processing files: libgnustep-BioCocoa-2.2.2-alt3
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.EQrOOV
find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell)
lib.prov: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/libBioCocoa.so.2: 86 symbols, 17 bpp
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.3Tlxvi
find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services)
Provides: libBioCocoa.so.2()(64bit) = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22
Requires: libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgnustep-base.so.1.24()(64bit) >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp, libobjc2.so.4()(64bit) >= set:mjyhn17r8TfASjqM4, rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.6lEziI
Creating libgnustep-BioCocoa-debuginfo package
Processing files: libgnustep-BioCocoa-devel-2.2.2-alt3
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bvMFcb
find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.I4StdH
find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services)
/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h:107:9: fatal error: BioCocoa/BCGeneExpressionOmnibus.h: No such file or directory
 #import <BioCocoa/BCGeneExpressionOmnibus.h>
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed, trying c++ mode
x86_64-alt-linux-cpp: error trying to exec 'cc1plus': execvp: No such file or directory
cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed
/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h:33:9: fatal error: BCAlignment.h: No such file or directory
 #import "BCAlignment.h"
         ^~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h: cpp failed
/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h:36:9: fatal error: BCInternal.h: No such file or directory
 #import "BCInternal.h"
         ^~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h: cpp failed
Provides: gnustep-BioCocoa-devel = 2.2.2-alt3
Requires: gnustep-BioCocoa = 2.2.2-alt3, libgnustep-BioCocoa = 2.2.2-alt3, /usr/lib64/libBioCocoa.so.2, gnustep-base-devel
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.xrCuQq
Processing files: libgnustep-BioCocoa-debuginfo-2.2.2-alt3
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.odwDBd
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.1VLIt3
find-requires: running scripts (debuginfo)
Provides: debug64(libBioCocoa.so.2)
Requires: libgnustep-BioCocoa = 2.2.2-alt3, debug64(libc.so.6), debug64(libgnustep-base.so.1.24), debug64(libobjc2.so.4)
Removing 1 extra deps from gnustep-BioCocoa due to dependency on libgnustep-BioCocoa
Removing 1 extra deps from libgnustep-BioCocoa-devel due to dependency on libgnustep-BioCocoa
Removing 1 extra deps from libgnustep-BioCocoa-devel due to repentancy on gnustep-BioCocoa
Wrote: /usr/src/RPM/RPMS/x86_64/gnustep-BioCocoa-2.2.2-alt3.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/libgnustep-BioCocoa-2.2.2-alt3.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/libgnustep-BioCocoa-devel-2.2.2-alt3.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/libgnustep-BioCocoa-debuginfo-2.2.2-alt3.x86_64.rpm (w2.lzdio)
18.00user 12.73system 0:36.54elapsed 84%CPU (0avgtext+0avgdata 56424maxresident)k
0inputs+0outputs (0major+2573327minor)pagefaults 0swaps
6.37user 2.15system 1:04.81elapsed 13%CPU (0avgtext+0avgdata 135412maxresident)k
0inputs+0outputs (0major+266639minor)pagefaults 0swaps
--- gnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.repo	2014-02-14 00:43:45.000000000 +0000
+++ gnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.hasher	2024-04-14 12:07:49.834512808 +0000
@@ -3,3 +3,3 @@
 /usr/lib64/GNUstep/Frameworks/BioCocoa.framework	40755	root:root	
-/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa	120777	root:root	./Versions/Current/BioCocoa
+/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa	120777	root:root	Versions/Current/BioCocoa
 /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Resources	120777	root:root	Versions/Current/Resources
@@ -16,3 +16,3 @@
 /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/Current	120777	root:root	2
-/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so	120777	root:root	./Versions/Current/libBioCocoa.so
+/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so	120777	root:root	Versions/Current/libBioCocoa.so
 /usr/share/doc/gnustep-BioCocoa-2.2.2	40755	root:root	
@@ -30,3 +30,3 @@
 File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework	40755	root:root		
-File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa	120777	root:root		./Versions/Current/BioCocoa
+File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa	120777	root:root		Versions/Current/BioCocoa
 File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Resources	120777	root:root		Versions/Current/Resources
@@ -43,3 +43,3 @@
 File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/Current	120777	root:root		2
-File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so	120777	root:root		./Versions/Current/libBioCocoa.so
+File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so	120777	root:root		Versions/Current/libBioCocoa.so
 File: /usr/share/doc/gnustep-BioCocoa-2.2.2	40755	root:root		
@@ -50,2 +50,2 @@
 File: /usr/share/doc/gnustep-BioCocoa-2.2.2/license.txt	100644	root:root	4d1b98213a3035f828c69adf03f040d2	
-RPMIdentity: f6666f08046dd6668265899a6a2a9419a3aa2da03ceda6e64f83c1a07c46ef09b9aefd89df76a4c6e84feec80a37e26d6fcef8a658a08d2d1b7f20806749fce4
+RPMIdentity: 1c8c1623b586575ea0bb3ac79a96ebe12b1b3f84e28e682adaa1ed7700c1e7ebeb4cd54f705e698f4fdde9fec85094586f451b42da1213a6cd3ffe1894f69790
--- libgnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.repo	2014-02-14 00:43:45.000000000 +0000
+++ libgnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.hasher	2024-04-14 12:07:49.921512959 +0000
@@ -5,12 +5,13 @@
 Requires: libc.so.6(GLIBC_2.3)(64bit)  
-Requires: libgnustep-base.so.1.24()(64bit) >= set:qluHxuuPoZfxdDPjB2QIKgkWLAJdiVh1t16M5IG2shQZuFMuyizRJ3aI4rkhuxAVtlwed9yNSZw8B1pzQS5IMQYB8ihvNmTQbD5Tc0
+Requires: libc.so.6(GLIBC_2.3.4)(64bit)  
+Requires: libc.so.6(GLIBC_2.4)(64bit)  
+Requires: libgnustep-base.so.1.24()(64bit) >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp
 Requires: rpmlib(SetVersions)  
-Requires: libobjc2.so.4()(64bit) >= set:mjGI240xF2Vtlo0
-Requires: libpthread.so.0()(64bit)  
+Requires: libobjc2.so.4()(64bit) >= set:mjyhn17r8TfASjqM4
 Requires: rtld(GNU_HASH)  
 Requires: rpmlib(PayloadIsLzma)  
-Provides: libBioCocoa.so.2()(64bit) = set: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
+Provides: libBioCocoa.so.2()(64bit) = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22
 Provides: libgnustep-BioCocoa = 2.2.2-alt3
 File: /usr/lib64/libBioCocoa.so.2	120777	root:root		libBioCocoa.so.2.2.2
-File: /usr/lib64/libBioCocoa.so.2.2.2	100644	root:root	01e7f63df97ce2f197378fd46b8e435a	
-RPMIdentity: b2ca6c284875137b78d3e8427e786d37bfa3c0e30b8e862ac873735fc74e4761589f4568af73b9a830ef804c376711935591718671101cbb82f140be74735113
+File: /usr/lib64/libBioCocoa.so.2.2.2	100644	root:root	367f77cc6f8f44d382f125622fcfa0e4	
+RPMIdentity: 53064c0ad86267631d77fc5e34195aa1f678cfa6a4a2c64abdd0dfc079ef8c87ffb46f5d3bd909bbbd50494d7279d8d571442d034ec90478f9de5388a1704b18
--- libgnustep-BioCocoa-debuginfo-2.2.2-alt3.x86_64.rpm.repo	2014-02-14 00:43:45.000000000 +0000
+++ libgnustep-BioCocoa-debuginfo-2.2.2-alt3.x86_64.rpm.hasher	2024-04-14 12:07:50.014513121 +0000
@@ -1 +1,4 @@
+/usr/lib/debug/.build-id/71	40755	root:root	
+/usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d	120777	root:root	../../../../lib64/libBioCocoa.so.2.2.2
+/usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d.debug	120777	root:root	../../usr/lib64/libBioCocoa.so.2.2.2.debug
 /usr/lib/debug/usr/lib64/libBioCocoa.so.2.2.2.debug	100644	root:root	
@@ -32,6 +35,4 @@
 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m	100644	root:root	
-/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h	100644	root:root	
 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m	100644	root:root	
 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h	100644	root:root	
-/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h	100644	root:root	
 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m	100644	root:root	
@@ -68,2 +69,3 @@
 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m	100644	root:root	
+/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h	100644	root:root	
 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m	100644	root:root	
@@ -112,3 +114,2 @@
 Requires: debug64(libobjc2.so.4)  
-Requires: debug64(libpthread.so.0)  
 Requires: rpmlib(PayloadIsLzma)  
@@ -116,3 +117,6 @@
 Provides: libgnustep-BioCocoa-debuginfo = 2.2.2-alt3
-File: /usr/lib/debug/usr/lib64/libBioCocoa.so.2.2.2.debug	100644	root:root	6b259092c843e6f76ae5d84fa00c87b9	
+File: /usr/lib/debug/.build-id/71	40755	root:root		
+File: /usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d	120777	root:root		../../../../lib64/libBioCocoa.so.2.2.2
+File: /usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d.debug	120777	root:root		../../usr/lib64/libBioCocoa.so.2.2.2.debug
+File: /usr/lib/debug/usr/lib64/libBioCocoa.so.2.2.2.debug	100644	root:root	9620245da7c276c0f012528775a5189f	
 File: /usr/lib/debug/usr/lib64/libBioCocoa.so.2.debug	120777	root:root		libBioCocoa.so.2.2.2.debug
@@ -148,6 +152,4 @@
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m	100644	root:root	301a35c6419258de6cc5343caf74e381	
-File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h	100644	root:root	7bb1a6ab926af99a5c7e1db57999e30d	
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m	100644	root:root	36361acc505c5b10e788123d07c9c9fe	
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h	100644	root:root	4aaa7a496035cd95acafcded7e46adbf	
-File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h	100644	root:root	595c87c13b66e5db32f0941b1f123db9	
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m	100644	root:root	8538bfd65e688185c02504904dd8f225	
@@ -184,2 +186,3 @@
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m	100644	root:root	ffcf1ddb9c14a2d92bfb46081f741449	
+File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h	100644	root:root	b2b1fdf5c19b8dcafd84b3329707c38c	
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m	100644	root:root	2332c3cca0fb58763f69b0adf948acfe	
@@ -224,2 +227,2 @@
 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/derived_src/NSFramework_BioCocoa.m	100644	root:root	492923ed782111152ea4856a79134d83	
-RPMIdentity: e7e09e2ec62fe4c4d81ea0d07106d4af84eed0ffd151dd4538aa20a8663df0758c86d93c2b5fd4c1fc6422ffec7a5450ee6ade322c29fe5e6ef5e5c6641fa531
+RPMIdentity: d9235177c31e18693ae95c43ddeb41f940986156967c6f5922819cf1f3f792a6b77c2723a6094da2e5ff6b01984106d29a0da8c56c8957dfc1b8312629b2bce2
--- libgnustep-BioCocoa-devel-2.2.2-alt3.x86_64.rpm.repo	2014-02-14 00:43:45.000000000 +0000
+++ libgnustep-BioCocoa-devel-2.2.2-alt3.x86_64.rpm.hasher	2024-04-14 12:07:50.096513264 +0000
@@ -111,2 +111,2 @@
 File: /usr/lib64/libBioCocoa.so	120777	root:root		libBioCocoa.so.2
-RPMIdentity: 3f95792f985943dd830ed24d0cd56f2feb75863a10470a871ef153596fda62b08dbff0239cf0bcfa2cde97b835397c2a7e00ddb4f79a6d874880f2627bffab59
+RPMIdentity: 3094f259c335b8bef01b4f0d6a9ed4fe190b5637ef48c74ae6f2a7cc4193019cdbb84f2d7de6d042cd27970141b296ae4eba3bfe3e667802ee38dc748b65d607