<86>Jan 28 10:42:31 userdel[3230048]: delete user 'rooter' <86>Jan 28 10:42:31 userdel[3230048]: removed group 'rooter' owned by 'rooter' <86>Jan 28 10:42:31 userdel[3230048]: removed shadow group 'rooter' owned by 'rooter' <86>Jan 28 10:42:31 groupadd[3230073]: group added to /etc/group: name=rooter, GID=1829 <86>Jan 28 10:42:31 groupadd[3230073]: group added to /etc/gshadow: name=rooter <86>Jan 28 10:42:31 groupadd[3230073]: new group: name=rooter, GID=1829 <86>Jan 28 10:42:31 useradd[3230083]: new user: name=rooter, UID=1829, GID=1829, home=/root, shell=/bin/bash <86>Jan 28 10:42:31 userdel[3230094]: delete user 'builder' <86>Jan 28 10:42:31 userdel[3230094]: removed group 'builder' owned by 'builder' <86>Jan 28 10:42:31 userdel[3230094]: removed shadow group 'builder' owned by 'builder' <86>Jan 28 10:42:31 groupadd[3230104]: group added to /etc/group: name=builder, GID=1830 <86>Jan 28 10:42:31 groupadd[3230104]: group added to /etc/gshadow: name=builder <86>Jan 28 10:42:31 groupadd[3230104]: new group: name=builder, GID=1830 <86>Jan 28 10:42:31 useradd[3230110]: new user: name=builder, UID=1830, GID=1830, home=/usr/src, shell=/bin/bash <13>Jan 28 10:42:35 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902884 installed <13>Jan 28 10:42:35 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633315 installed <13>Jan 28 10:42:35 rpmi: libexpat-2.4.3-alt1 p9+293696.100.1.1 1643124786 installed <13>Jan 28 10:42:35 rpmi: perl-HTTP-Date-6.02-alt1 1348645274 installed <13>Jan 28 10:42:35 rpmi: libjasper-2.0.22-alt1 p9+259398.100.5.1 1602695042 installed <13>Jan 28 10:42:35 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Jan 28 10:42:35 rpmi: libwebp7-1.0.3-alt1 p9+234901.200.1.1 1563552213 installed <13>Jan 28 10:42:35 rpmi: libogg-1.3.4-alt1 p9+249556.100.1.1 1586300644 installed <13>Jan 28 10:42:35 rpmi: libgnustep-objc2-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734429 installed <13>Jan 28 10:42:35 rpmi: liblcms2-2.9-alt1 1516411888 installed <13>Jan 28 10:42:35 rpmi: libltdl7-2.4.6-alt1 sisyphus+226971.100.2.1 1554906326 installed <13>Jan 28 10:42:35 rpmi: libopenjpeg2.0-2.3.1-alt1 sisyphus+226454.100.1.1 1554284336 installed <13>Jan 28 10:42:35 rpmi: libjbig-2.1-alt1 1401380921 installed <13>Jan 28 10:42:35 rpmi: libtiff5-4.0.10.0.57.f9fc01c3-alt1 sisyphus+226958.100.1.1 1554850937 installed <13>Jan 28 10:42:35 rpmi: libICE-1.0.9-alt1 1409902719 installed <13>Jan 28 10:42:35 rpmi: libfribidi-1.0.7-alt1 p9+238309.200.1.1 1569787041 installed <13>Jan 28 10:42:35 rpmi: libglvnd-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed <13>Jan 28 10:42:35 rpmi: libwayland-server-1.18.0-alt1 p9+260591.100.12.1 1606212847 installed <13>Jan 28 10:42:35 rpmi: ilmbase25-common-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed <13>Jan 28 10:42:35 rpmi: libiex25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed <13>Jan 28 10:42:35 rpmi: libicu64-1:6.4.2-alt3 p9+270873.100.1.1 1619612690 installed <13>Jan 28 10:42:35 rpmi: libnettle6-3.4.1-alt1 sisyphus+226533.100.2.1 1554512181 installed <13>Jan 28 10:42:35 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237682 installed <13>Jan 28 10:42:35 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed <13>Jan 28 10:42:35 rpmi: libxslt-1.1.34-alt1.p9.1 p9+261811.300.3.1 1605513910 installed <13>Jan 28 10:42:35 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>Jan 28 10:42:35 rpmi: perl-Compress-Raw-Zlib-2.086-alt1 sisyphus+226395.100.1.2 1554269783 installed <13>Jan 28 10:42:35 rpmi: perl-libnet-1:3.11-alt1 1511423541 installed <13>Jan 28 10:42:35 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>Jan 28 10:42:35 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed <13>Jan 28 10:42:35 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed <13>Jan 28 10:42:35 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed <13>Jan 28 10:42:35 rpmi: libaspell-0.60.8-alt1 p9+261825.100.2.1 1605785529 installed <13>Jan 28 10:42:35 rpmi: llvm11.0-filesystem-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed <13>Jan 28 10:42:35 rpmi: llvm-common-11.0.1-alt3 p9+281614.40.11.1 1628750610 installed <13>Jan 28 10:42:37 rpmi: clang11.0-libs-support-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed <13>Jan 28 10:42:38 rpmi: llvm11.0-libs-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed <13>Jan 28 10:42:39 rpmi: clang11.0-libs-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed <13>Jan 28 10:42:39 rpmi: clang11.0-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed <13>Jan 28 10:42:39 rpmi: llvm-common-clang-11.0.1-alt3 p9+281614.40.11.1 1628750610 installed <13>Jan 28 10:42:39 rpmi: clang11.0-devel-11.0.1-alt2 p9+281614.160.11.1 1628755782 installed <13>Jan 28 10:42:39 rpmi: llvm-common-clang-devel-11.0.1-alt3 p9+281614.40.11.1 1628750610 installed <13>Jan 28 10:42:39 rpmi: aspell-0.60.8-alt1 p9+261825.100.2.1 1605785529 installed <13>Jan 28 10:42:39 rpmi: libe2fs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed <13>Jan 28 10:42:39 rpmi: libss-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed <13>Jan 28 10:42:39 rpmi: e2fsprogs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091653 installed <13>Jan 28 10:42:39 rpmi: libgdbm-devel-1.8.3-alt10 1454943313 installed <13>Jan 28 10:42:39 rpmi: libgpg-error-devel-1.36-alt1 p9+261942.140.4.1 1606237682 installed <13>Jan 28 10:42:39 rpmi: libhogweed4-3.4.1-alt1 sisyphus+226533.100.2.1 1554512181 installed <13>Jan 28 10:42:39 rpmi: libilmthread25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed <13>Jan 28 10:42:39 rpmi: libimath25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed <13>Jan 28 10:42:39 rpmi: libhalf25-2.5.6-alt1 p9+272589.100.3.1 1622734947 installed <13>Jan 28 10:42:39 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed <13>Jan 28 10:42:39 rpmi: libraw-0.19.5-alt1 p9+236466.300.1.1 1566486023 installed <13>Jan 28 10:42:39 rpmi: libgnustep-objc2-devel-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734429 installed <13>Jan 28 10:42:39 rpmi: libflac8-1.3.3-alt1 p9+249557.100.1.1 1586301784 installed <13>Jan 28 10:42:39 rpmi: libvorbis-1.3.6-alt2 sisyphus+220072.200.2.2 1548744467 installed <13>Jan 28 10:42:39 rpmi: libicns-0.7.1-alt1.2 sisyphus+223351.100.1.1 1551468866 installed <13>Jan 28 10:42:39 rpmi: perl-File-Listing-6.04-alt1 1329758996 installed <13>Jan 28 10:42:39 rpmi: libflif-0.3-alt1 sisyphus+223364.100.1.1 1551501707 installed <13>Jan 28 10:42:39 rpmi: libxml2-devel-1:2.9.10-alt6.p9.1 p9+314487.100.1.1 1675223837 installed <13>Jan 28 10:42:40 rpmi: libicu65-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Jan 28 10:42:40 rpmi: icu-utils-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Jan 28 10:42:40 rpmi: libgif-4.1.6-alt3 1299634266 installed <13>Jan 28 10:42:40 rpmi: libImageMagick6-common-6.9.11.23-alt1 p9+265603.200.9.1 1613079173 installed <13>Jan 28 10:42:40 rpmi: libwmflite-0.2.8.4-alt13 1506519334 installed <13>Jan 28 10:42:40 rpmi: liblqr-0.4.2-alt1 1383038436 installed <13>Jan 28 10:42:40 rpmi: libx265-160-2.8-alt1 1529659165 installed <13>Jan 28 10:42:40 rpmi: libde265-1.0.3-alt1 1528888214 installed <13>Jan 28 10:42:40 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Jan 28 10:42:40 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Jan 28 10:42:40 rpmi: libgts-0.7.6-alt2.drc20130205.1 sisyphus+225727.500.8.1 1553672625 installed <13>Jan 28 10:42:40 rpmi: libpaper-1.1.26-alt1 sisyphus+221360.100.1.1 1549974198 installed <13>Jan 28 10:42:40 rpmi: icon-theme-hicolor-0.17-alt2 p9+248347.100.1.1 1584981172 installed <13>Jan 28 10:42:40 rpmi: shared-mime-info-1.13.1-alt1 p9+238204.100.1.1 1569496447 installed <13>Jan 28 10:42:40 rpmi: gsettings-desktop-schemas-data-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed <13>Jan 28 10:42:40 rpmi: libgio-2.60.7-alt1 p9+237353.100.2.2 1568372980 installed <13>Jan 28 10:42:40 rpmi: gsettings-desktop-schemas-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed <13>Jan 28 10:42:40 rpmi: libgdk-pixbuf-locales-2.38.2-alt1 p9+237353.1000.2.2 1568374008 installed <13>Jan 28 10:42:40 rpmi: libgdk-pixbuf-2.38.2-alt1 p9+237353.1000.2.2 1568374008 installed <13>Jan 28 10:42:40 rpmi: gtk-update-icon-cache-3.24.29-alt0.M90P.1 p9+277455.200.2.1 1625582389 installed <13>Jan 28 10:42:40 rpmi: libheif-1.6.2-alt1 p9+244301.100.3.1 1582815556 installed <13>Jan 28 10:42:40 rpmi: libgtk+2-locales-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed <13>Jan 28 10:42:40 rpmi: libatk-locales-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed <13>Jan 28 10:42:40 rpmi: libatk-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed <13>Jan 28 10:42:40 rpmi: libdatrie-0.2.9-alt1_6 1511686677 installed <13>Jan 28 10:42:40 rpmi: libthai-0.1.28-alt1_1 sisyphus+226107.100.1.1 1554123079 installed <13>Jan 28 10:42:40 rpmi: libpixman-3:0.38.4-alt1 sisyphus+228006.100.1.1 1556013486 installed <13>Jan 28 10:42:40 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed <13>Jan 28 10:42:40 rpmi: libharfbuzz-2.8.1-alt1 p9+319683.500.4.1 1689082543 installed <13>Jan 28 10:42:40 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed <13>Jan 28 10:42:40 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed Updating fonts cache: <29>Jan 28 10:42:41 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Jan 28 10:42:41 rpmi: libraqm-0.5.0-alt1 1530413325 installed <13>Jan 28 10:42:41 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268594 installed <13>Jan 28 10:42:41 rpmi: libwayland-client-1.18.0-alt1 p9+260591.100.12.1 1606212847 installed <13>Jan 28 10:42:41 rpmi: libpciaccess-1:0.14-alt1 1528969624 installed <13>Jan 28 10:42:41 rpmi: libdrm-1:2.4.105-alt2 p9+271012.100.1.1 1619786664 installed <13>Jan 28 10:42:41 rpmi: libgbm-4:21.0.3-alt1 p9+271012.200.3.1 1621244963 installed <13>Jan 28 10:42:41 rpmi: libX11-locales-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Jan 28 10:42:41 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949347 installed <13>Jan 28 10:42:41 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed <13>Jan 28 10:42:41 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed <13>Jan 28 10:42:41 rpmi: libX11-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Jan 28 10:42:41 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949422 installed <13>Jan 28 10:42:41 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed <13>Jan 28 10:42:41 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614842 installed <13>Jan 28 10:42:41 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949214 installed <13>Jan 28 10:42:41 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed <13>Jan 28 10:42:41 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949698 installed <13>Jan 28 10:42:41 rpmi: libXxf86vm-1.1.4-alt2 1527672159 installed <13>Jan 28 10:42:41 rpmi: libGLX-mesa-4:21.0.3-alt1 p9+271012.200.3.1 1621244963 installed <13>Jan 28 10:42:41 rpmi: libEGL-mesa-4:21.0.3-alt1 p9+271012.200.3.1 1621244963 installed <13>Jan 28 10:42:41 rpmi: libEGL-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed <13>Jan 28 10:42:41 rpmi: libGLX-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed <13>Jan 28 10:42:41 rpmi: libGL-7:1.3.2-alt0.p9 p9+265957.240.8.1 1617618104 installed <13>Jan 28 10:42:42 rpmi: libcairo-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515520 installed <13>Jan 28 10:42:42 rpmi: libpango-1.44.6-alt1 p9+237353.700.2.2 1568373865 installed <13>Jan 28 10:42:42 rpmi: librsvg-1:2.46.4-alt1 p9+248366.400.6.1 1587060872 installed <13>Jan 28 10:42:42 rpmi: liblasi-1.1.2-alt1.qa1 1460141148 installed <13>Jan 28 10:42:42 rpmi: libXi-1.7.9-alt2 sisyphus+226377.100.1.2 1554260258 installed <13>Jan 28 10:42:42 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268223 installed <13>Jan 28 10:42:42 rpmi: libXt-1.1.4-alt1 1369984716 installed <13>Jan 28 10:42:42 rpmi: libXpm-3.5.12-alt1 sisyphus+223149.400.2.1 1551268300 installed <13>Jan 28 10:42:42 rpmi: libgd3-2.2.5-alt3 sisyphus+226800.200.2.1 1554649314 installed <13>Jan 28 10:42:42 rpmi: libXcomposite-0.4.5-alt1 sisyphus+225206.300.1.2 1552949136 installed <13>Jan 28 10:42:42 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949282 installed <13>Jan 28 10:42:42 rpmi: openexr25-common-2.5.6-alt1 p9+272589.200.3.1 1622735064 installed <13>Jan 28 10:42:42 rpmi: libilmimf25-2.5.6-alt1 p9+272589.200.3.1 1622735064 installed <13>Jan 28 10:42:42 rpmi: libopus-1.3.1-alt3 p9+247689.300.3.1 1584537429 installed <13>Jan 28 10:42:42 rpmi: libgsm-1.0.17-alt1 1523356157 installed <13>Jan 28 10:42:42 rpmi: libsndfile-1.0.30-alt2 p9+262916.200.2.1 1607353710 installed <13>Jan 28 10:42:42 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228072 installed <13>Jan 28 10:42:42 rpmi: libsystemd-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed <13>Jan 28 10:42:42 rpmi: libdbus-1.12.16-alt2 p9+240607.100.1.1 1573553670 installed <13>Jan 28 10:42:42 rpmi: libavahi-0.8-alt2 p9+270905.100.1.1 1619639855 installed <13>Jan 28 10:42:42 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696275 installed <13>Jan 28 10:42:42 rpmi: libgnutls30-3.6.16-alt4 p9+334994.100.2.1 1702636231 installed <13>Jan 28 10:42:42 rpmi: libgnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027556 installed <13>Jan 28 10:42:42 rpmi: libcups-2.3.3-alt7.op2 p9+289603.100.2.1 1637911367 installed <13>Jan 28 10:42:42 rpmi: libgtk+2-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed <13>Jan 28 10:42:43 rpmi: libgs-9.27-alt1.M90P.1 p9+258832.300.4.1 1601632175 installed <13>Jan 28 10:42:43 rpmi: libgraphviz-2.41.2-alt4 p9+259365.100.2.1 1602278839 installed <13>Jan 28 10:42:43 rpmi: perl-Try-Tiny-0.30-alt1 1514318058 installed <13>Jan 28 10:42:43 rpmi: perl-IO-Socket-IP-0.39-alt1 1494508514 installed <13>Jan 28 10:42:43 rpmi: perl-Compress-Raw-Bzip2-2.086-alt1 sisyphus+226394.100.1.2 1554269409 installed <13>Jan 28 10:42:43 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed <13>Jan 28 10:42:43 rpmi: perl-Filter-1.59-alt1.1 sisyphus+219907.400.1.1 1548343225 installed <13>Jan 28 10:42:43 rpmi: perl-Encode-3.01-alt1 sisyphus+224923.100.1.1 1552474113 installed <13>Jan 28 10:42:43 rpmi: perl-URI-1.76-alt1 sisyphus+220243.100.1.1 1548863244 installed <13>Jan 28 10:42:43 rpmi: perl-IO-Compress-2.086-alt1 sisyphus+226399.100.2.1 1554270186 installed <13>Jan 28 10:42:43 rpmi: perl-Net-HTTP-6.18-alt1 1526560501 installed <13>Jan 28 10:42:43 rpmi: perl-HTML-Parser-3.72-alt1.2 sisyphus+219907.600.1.1 1548343407 installed <13>Jan 28 10:42:43 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Jan 28 10:42:43 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Jan 28 10:42:43 rpmi: perl-IO-HTML-1.001-alt1 1404821752 installed <13>Jan 28 10:42:43 rpmi: perl-HTTP-Message-6.18-alt1 1528288416 installed <13>Jan 28 10:42:43 rpmi: perl-HTTP-Cookies-6.04-alt1 1504116575 installed <13>Jan 28 10:42:43 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Jan 28 10:42:43 rpmi: perl-XML-Writer-0.625-alt1 1402417374 installed <13>Jan 28 10:42:43 rpmi: perl-Term-ANSIColor-4.06-alt1 1479407083 installed <13>Jan 28 10:42:43 rpmi: perl-Data-Dump-1.23-alt1 1444601978 installed <13>Jan 28 10:42:43 rpmi: perl-libwww-6.39-alt1 sisyphus+229237.100.1.1 1557650051 installed <13>Jan 28 10:42:43 rpmi: perl-XML-Parser-2.44-alt2.2 sisyphus+219907.1300.1.1 1548343654 installed <13>Jan 28 10:42:43 rpmi: libdb4.7-devel-4.7.25-alt9 1490438456 installed <13>Jan 28 10:42:43 rpmi: perl-devel-1:5.28.3-alt1 p9+261964.100.3.1 1606316185 installed <13>Jan 28 10:42:43 rpmi: hwinfo-utils-21.23-alt1.1 sisyphus+223919.100.1.1 1551893088 installed <13>Jan 28 10:42:43 rpmi: gnustep-dirs-1.0-alt2 1355065929 installed <13>Jan 28 10:42:43 rpmi: gdb-common-8.2.50.20180917-alt6 p9+260468.500.4.1 1603887849 installed <13>Jan 28 10:42:43 rpmi: libobjc4-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Jan 28 10:42:43 rpmi: libobjc8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Jan 28 10:42:43 rpmi: gcc8-objc-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Jan 28 10:42:43 rpmi: gcc-objc-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Jan 28 10:42:43 rpmi: djvu-common-3.5.25.3-alt1 1365826139 installed <13>Jan 28 10:42:43 rpmi: libdjvu-3.5.25.3-alt1 1365826137 installed <13>Jan 28 10:42:43 rpmi: libImageMagick6.6-6.9.11.23-alt1 p9+265603.200.9.1 1613079173 installed <13>Jan 28 10:42:44 rpmi: libgnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149553 installed <13>Jan 28 10:42:44 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Jan 28 10:42:44 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Jan 28 10:42:44 rpmi: ca-certificates-2021.10.06-alt1 p9+289862.100.1.1 1637033643 installed <13>Jan 28 10:42:44 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed <13>Jan 28 10:42:44 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed <13>Jan 28 10:42:44 rpmi: libcrypto1.1-1.1.1u-alt1 p9+322202.100.1.1 1685863283 installed <13>Jan 28 10:42:44 rpmi: libssl1.1-1.1.1u-alt1 p9+322202.100.1.1 1685863283 installed <13>Jan 28 10:42:44 rpmi: python3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed <13>Jan 28 10:42:44 rpmi: libpython3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed <13>Jan 28 10:42:44 rpmi: python3-base-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed <13>Jan 28 10:42:44 rpmi: gdb-8.2.50.20180917-alt6 p9+260468.500.4.1 1603887849 installed <13>Jan 28 10:42:44 rpmi: gnustep-make-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed <13>Jan 28 10:42:44 rpmi: gnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027556 installed <13>Jan 28 10:42:44 rpmi: gnustep-base-devel-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027556 installed <13>Jan 28 10:42:44 rpmi: alsa-ucm-conf-1.2.4-alt1 p9+250722.2300.14.1 1614269485 installed <13>Jan 28 10:42:44 rpmi: alsa-topology-conf-1.2.4-alt1 p9+250722.2200.14.1 1614269467 installed <13>Jan 28 10:42:44 rpmi: libalsa-1:1.2.4-alt1 p9+250722.2400.14.1 1614269549 installed <13>Jan 28 10:42:45 rpmi: flite-2.1-alt1 sisyphus+222718.100.1.1 1551026078 installed <13>Jan 28 10:42:45 rpmi: libao-1:1.2.2-alt3 1512129137 installed <13>Jan 28 10:42:45 rpmi: gnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149553 installed <13>Jan 28 10:42:45 rpmi: gnustep-gui-devel-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149553 installed <13>Jan 28 10:42:45 rpmi: gnustep-make-devel-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed <13>Jan 28 10:42:45 rpmi: libgnutls-devel-3.6.16-alt4 p9+334994.100.2.1 1702636231 installed <13>Jan 28 10:42:45 rpmi: libicu-devel-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Jan 28 10:42:45 rpmi: libxslt-devel-1.1.34-alt1.p9.1 p9+261811.300.3.1 1605513910 installed <13>Jan 28 10:42:45 rpmi: libgcrypt-devel-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed <13>Jan 28 10:42:45 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550600768 installed <13>Jan 28 10:42:45 rpmi: libgmp-devel-6.1.2-alt3 sisyphus+229304.40.2.1 1557770931 installed <13>Jan 28 10:42:45 rpmi: libffi-devel-1:3.2.1-alt3 p9+251949.100.1.1 1589887590 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/gnustep-BioCocoa-2.2.2-alt3.nosrc.rpm (w1.gzdio) Installing gnustep-BioCocoa-2.2.2-alt3.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.29511 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf gnustep-BioCocoa-2.2.2 + echo 'Source #0 (gnustep-BioCocoa-2.2.2.tar):' Source #0 (gnustep-BioCocoa-2.2.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/gnustep-BioCocoa-2.2.2.tar + cd gnustep-BioCocoa-2.2.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.29511 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib64/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib64/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib64 +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib64/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib64/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib64 +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib64/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib64/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib64 +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=x86_64-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub x86_64-pc-linux-gnu ++ GNUSTEP_HOST=x86_64-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh x86_64-pc-linux-gnu ++ GNUSTEP_HOST_CPU=x86_64 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh x86_64 ++ GNUSTEP_HOST_CPU=x86_64 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib64/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib64 ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib64/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib64 ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib64/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib64 ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib64 /usr/lib64 /usr/lib64 no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib64:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib64 ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib64: ++ grep -v :/usr/lib64: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib64: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib64/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib64/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java: ++ grep -v :/usr/lib64/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib64/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib64/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make -j16 messages=yes debug=yes strip=no shared=yes 'CONFIG_SYSTEM_LIBS=-lgnustep-base -lobjc2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h Making build-headers for subproject BCAnalysis... /bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h Making build-headers for subproject BCGeneExpression... /bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h Making build-headers for subproject BCGeneticCode... /bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h Making build-headers for subproject BCProteinStructure... /bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h Making build-headers for subproject BCSequence... /bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h Making build-headers for subproject BCSequenceIO... /bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h Making build-headers for subproject BCSymbol... /bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h Making build-headers for subproject BCTools... /bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h Making build-headers for subproject BCUtils... /bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h Making build-headers for subproject BCFoundation... /bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making all in subprojects of framework BioCocoa... gmake[1]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[1]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' Making all in subprojects of subproject BCFoundation... gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCSequenceAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCSequenceAlignment.m.o gcc BCScoreMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCScoreMatrix.m.o gcc BCPairwiseAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAlignment.obj/BCPairwiseAlignment.m.o obj/BCAlignment.obj/BCScoreMatrix.m.o obj/BCAlignment.obj/BCSequenceAlignment.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' Making all for subproject BCAnalysis... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAnalysis.obj/ gcc BCSuffixArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCSuffixArray.m.o BCSuffixArray.m: In function '-[BCSuffixArray dumpSuffixArray]': BCSuffixArray.m:896:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:897:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:932:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:933:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m: In function '-[BCSuffixArrayUnionEnumerator nextSuffixPosition:sequence:suffixArray:]': BCSuffixArray.m:1464:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixPositions[i]), sizeof(int), 1, arrayFiles[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1465:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixSequences[i]), sizeof(int), 1, arrayFiles[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1598:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixPositions[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1599:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixSequences[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCMCP.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCMCP.m.o BCMCP.m: In function '+[BCMCP mcpToFile:suffixArray:withSuffixArray:lowerBound:]': BCMCP.m:160:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:161:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:163:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:164:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:334:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:335:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:352:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:353:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:358:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:359:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:366:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:367:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP intersectToFile:withMCP:]': BCMCP.m:486:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:487:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:489:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:490:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:514:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:515:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:517:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:518:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:735:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:736:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:738:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:739:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:762:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:763:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:765:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:766:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP unionToFile:withMCP:]': BCMCP.m:910:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:911:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:913:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:914:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:936:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:937:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:939:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:940:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1093:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1094:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1096:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1097:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1123:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1124:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1126:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1127:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1167:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1168:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1170:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1171:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1186:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1187:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1189:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1190:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1222:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1223:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1225:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1226:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1239:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1240:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1242:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1243:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP trimToFile:]': BCMCP.m:1272:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1273:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1275:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1276:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP outputFormat:withMinimumLength:]': BCMCP.m:1481:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1482:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1485:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1486:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1603:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1604:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1606:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1607:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAnalysis.obj/BCMCP.m.o obj/BCAnalysis.obj/BCSuffixArray.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' Making all for subproject BCGeneExpression... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneExpression.obj/ gcc BCSample.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSample.m.o gcc BCPlatform.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCPlatform.m.o gcc BCSeries.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSeries.m.o gcc BCParseSOFT.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCParseSOFT.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneExpression.obj/BCSeries.m.o obj/BCGeneExpression.obj/BCSample.m.o obj/BCGeneExpression.obj/BCPlatform.m.o obj/BCGeneExpression.obj/BCParseSOFT.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' Making all for subproject BCGeneticCode... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneticCode.obj/ gcc BCCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodon.m.o gcc BCCodonDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonDNA.m.o gcc BCCodonRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonRNA.m.o gcc BCGeneticCode.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCGeneticCode.m.o BCGeneticCode.m: In function '+[BCGeneticCode priv:createCodonArraysFromDictionary:]': BCGeneticCode.m:221:23: warning: variable 'RNACodon' set but not used [-Wunused-but-set-variable] BCCodon *aCodon, *RNACodon; ^~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneticCode.obj/BCCodonDNA.m.o obj/BCGeneticCode.obj/BCCodon.m.o obj/BCGeneticCode.obj/BCCodonRNA.m.o obj/BCGeneticCode.obj/BCGeneticCode.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' Making all for subproject BCProteinStructure... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCProteinStructure.obj/ gcc BCAtom.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCAtom.m.o gcc BCSecondaryStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o gcc BCChain.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCChain.m.o gcc BCSequenceStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSequenceStructure.m.o gcc BCProteinStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCProteinStructure.m.o gcc BCResidue.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCResidue.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCProteinStructure.obj/BCAtom.m.o obj/BCProteinStructure.obj/BCProteinStructure.m.o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o obj/BCProteinStructure.obj/BCChain.m.o obj/BCProteinStructure.obj/BCResidue.m.o obj/BCProteinStructure.obj/BCSequenceStructure.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' Making all for subproject BCSequence... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequence.obj/ gcc BCSequenceArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceArray.m.o gcc BCAnnotation.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCAnnotation.m.o gcc BCSequenceCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceCodon.m.o BCSequenceCodon.m: In function '-[BCSequenceCodon openReadingFramesLongerThanCutoff:]': BCSequenceCodon.m:301:16: warning: 'inORF' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( inORF ) ^ gcc BCSequence.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequence.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequence.obj/BCAnnotation.m.o obj/BCSequence.obj/BCSequence.m.o obj/BCSequence.obj/BCSequenceArray.m.o obj/BCSequence.obj/BCSequenceCodon.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' Making all for subproject BCSequenceIO... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequenceIO.obj/ gcc BCSequenceWriter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceWriter.m.o gcc BCCachedSequenceFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o gcc BCCachedFastaFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:58:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:73:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:76:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:97:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile symbols:ForCurrentSequenceAtPosition:ofLength:]': BCCachedFastaFile.m:149:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, fileHandle); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:104:3: warning: 'filePos' may be used uninitialized in this function [-Wmaybe-uninitialized] [d setObject: [NSNumber numberWithUnsignedLongLong: (filePos - 1)] forKey: @"end"]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCSequenceReader.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceReader.m.o BCSequenceReader.m: In function '-[BCSequenceReader readFileUsingText:]': BCSequenceReader.m:167:3: warning: no '-initWithRTF:documentAttributes:' method found NSAttributedString *rtfstring = [[NSAttributedString alloc] initWithRTF: [entryString dataUsingEncoding: NSUTF8StringEncoding] documentAttributes: nil]; ^~~~~~~~~~~~~~~~~~ BCSequenceReader.m:167:3: warning: (Messages without a matching method signature BCSequenceReader.m:167:3: warning: will be assumed to return 'id' and accept BCSequenceReader.m:167:3: warning: '...' as arguments.) BCSequenceReader.m: In function '-[BCSequenceReader readMacVectorFile:]': BCSequenceReader.m:651:18: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] NSMutableArray *annotationsArray; ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:798:3: warning: passing argument 2 of 'scanUpToString:intoString:' from incompatible pointer type [-Wincompatible-pointer-types] [lineScanner scanUpToString:@" " intoString: nil]; ^ BCSequenceReader.m:798:3: note: expected 'struct NSString **' but argument is of type 'id' BCSequenceReader.m: In function '-[BCSequenceReader readPhylipFile:]': BCSequenceReader.m:1113:31: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] NSMutableArray *linesArray, *annotationsArray, *namesArray, *sequenceArray; ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readSwissProtFile:]': BCSequenceReader.m:421:2: warning: 'sequenceString' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( [sequenceString length]) ~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:822:3: warning: 'sequenceRange.location' may be used uninitialized in this function [-Wmaybe-uninitialized] sequenceString = [line substringFromIndex: sequenceRange.location]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readFASTQFile:]': BCSequenceReader.m:1310:6: warning: 'seqData' may be used uninitialized in this function [-Wmaybe-uninitialized] BCSequence *newSequence = [[BCSequence alloc] initWithData: seqData symbolSet: nil]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequenceIO.obj/BCSequenceReader.m.o obj/BCSequenceIO.obj/BCSequenceWriter.m.o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' Making all for subproject BCSymbol... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSymbol.obj/ gcc BCNucleotide.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotide.m.o gcc BCSymbol.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbol.m.o gcc BCNucleotideDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideDNA.m.o gcc BCNucleotideRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideRNA.m.o gcc BCAminoAcid.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCAminoAcid.m.o gcc BCSymbolSet.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbolSet.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSymbol.obj/BCAminoAcid.m.o obj/BCSymbol.obj/BCNucleotide.m.o obj/BCSymbol.obj/BCSymbol.m.o obj/BCSymbol.obj/BCNucleotideDNA.m.o obj/BCSymbol.obj/BCNucleotideRNA.m.o obj/BCSymbol.obj/BCSymbolSet.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' Making all for subproject BCTools... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCTools.obj/ gcc BCSequenceTool.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCSequenceTool.m.o gcc BCToolDigest.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolDigest.m.o gcc BCToolTranslatorDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslatorDNA.m.o gcc BCToolHydropathyCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolHydropathyCalculator.m.o gcc BCToolSymbolCounter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSymbolCounter.m.o gcc BCToolComplement.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolComplement.m.o gcc BCToolMassCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolMassCalculator.m.o gcc BCToolTranslator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslator.m.o gcc BCToolSequenceFinder.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSequenceFinder.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCTools.obj/BCSequenceTool.m.o obj/BCTools.obj/BCToolDigest.m.o obj/BCTools.obj/BCToolHydropathyCalculator.m.o obj/BCTools.obj/BCToolMassCalculator.m.o obj/BCTools.obj/BCToolComplement.m.o obj/BCTools.obj/BCToolSequenceFinder.m.o obj/BCTools.obj/BCToolSymbolCounter.m.o obj/BCTools.obj/BCToolTranslator.m.o obj/BCTools.obj/BCToolTranslatorDNA.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' Making all for subproject BCUtils... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCUtils.obj/ gcc BCUtilData.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilData.m.o gcc BCUtilStrings.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilStrings.m.o BCUtilStrings.m: In function '-[NSString(StringAdditions) stringBeginsWithTwoNumbers]': BCUtilStrings.m:98:2: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] if ([scanner scanInt:nil]) ^~ BCUtilStrings.m:98:2: note: expected 'int *' but argument is of type 'id' BCUtilStrings.m:100:3: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] if ([scanner scanInt:nil]) ^~ BCUtilStrings.m:100:3: note: expected 'int *' but argument is of type 'id' gcc BCDataMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCDataMatrix.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCUtils.obj/BCDataMatrix.m.o obj/BCUtils.obj/BCUtilData.m.o obj/BCUtils.obj/BCUtilStrings.m.o ; Making all for subproject BCFoundation... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCFoundation.obj/ gcc BCStringDefinitions.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCStringDefinitions.m.o gcc BCPreferences.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCPreferences.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCFoundation.obj/BCStringDefinitions.m.o obj/BCFoundation.obj/BCPreferences.m.o BCAlignment/obj/subproject.o BCAnalysis/obj/subproject.o BCGeneExpression/obj/subproject.o BCGeneticCode/obj/subproject.o BCProteinStructure/obj/subproject.o BCSequence/obj/subproject.o BCSequenceIO/obj/subproject.o BCSymbol/obj/subproject.o BCTools/obj/subproject.o BCUtils/obj/subproject.o ; Making all for framework BioCocoa... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BioCocoa.obj/ classes=""; \ for object_file in ./BCFoundation/obj/subproject.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/BioCocoa-class-list; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "@interface NSFramework_BioCocoa : NSObject" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_BioCocoa.m; \ echo "@end" >> derived_src/NSFramework_BioCocoa.m; \ echo "@implementation NSFramework_BioCocoa" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath { return @\"/usr/lib64/GNUstep/Frameworks\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion { return @\"2\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_BioCocoa.m;\ echo "@end" >> derived_src/NSFramework_BioCocoa.m gcc derived_src/NSFramework_BioCocoa.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I./derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -o obj/BioCocoa.obj/NSFramework_BioCocoa.o \ gcc -shared -Wl,-soname,libBioCocoa.so.2 -rdynamic -shared-libgcc -pthread -fexceptions -o ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 obj/BioCocoa.obj/NSFramework_BioCocoa.o BCFoundation/obj/subproject.o -L/usr/src/GNUstep/Libraries -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -lgnustep-base -lobjc2 && (cd ./BioCocoa.framework/Versions/2/.; rm -f libBioCocoa.so; if [ "libBioCocoa.so.2" != "libBioCocoa.so.2.2.2" ]; then rm -f libBioCocoa.so.2; ln -s libBioCocoa.so.2.2.2 libBioCocoa.so.2; fi; ln -s libBioCocoa.so.2 libBioCocoa.so; ) || rm -f ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 ; \ (cd ./BioCocoa.framework/Versions/2/.; \ rm -f BioCocoa; \ ln -s libBioCocoa.so BioCocoa) \ /usr/bin/ld.default: BCFoundation/obj/subproject.o: in function `_i_BCSuffixArray__constructFromSequenceArray_strand_': /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis/BCSuffixArray.m:513: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' for f in BCFoundation/BCSymbol/SymbolTemplates/nucleotides.plist BCFoundation/BCSymbol/SymbolTemplates/aminoacids.plist; do \ if [ -f .//$f -o -d .//$f ]; then \ cp -fr .//$f ./BioCocoa.framework/Versions/2/Resources/; \ else \ echo "Warning: .//$f not found - ignoring"; \ fi; \ done for subproject in BCFoundation; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./BioCocoa.framework/Versions/2/Resources/; \ fi; \ done; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"BioCocoa\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"BioCocoa\";"; \ echo " Classes = "; \ cat ./derived_src/BioCocoa-class-list; \ echo " ;"; \ echo "}") >BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist if [ -r "" ]; then \ plmerge BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist ; \ fi cd ./BioCocoa.framework/.; \ rm -f BioCocoa libBioCocoa.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./BioCocoa short` \ BioCocoa; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libBioCocoa.so short` \ libBioCocoa.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.27037 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/gnustep-BioCocoa-buildroot + : + /bin/rm -rf -- /usr/src/tmp/gnustep-BioCocoa-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib64/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib64/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib64 +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib64/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib64/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib64 +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib64/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib64/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib64/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib64 +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=x86_64-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub x86_64-pc-linux-gnu ++ GNUSTEP_HOST=x86_64-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh x86_64-pc-linux-gnu ++ GNUSTEP_HOST_CPU=x86_64 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh x86_64 ++ GNUSTEP_HOST_CPU=x86_64 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib64/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib64 ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib64/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib64 ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/Applications ']' +++ '[' -z /usr/lib64/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib64/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib64 ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/libexec/rpm-build:/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib64 /usr/lib64 /usr/lib64 no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib64:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib64 ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib64: ++ grep -v :/usr/lib64: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib64 ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib64: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep /usr/lib64/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib64/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib64/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java: ++ grep -v :/usr/lib64/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib64/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib64/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib64/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib64/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot GNUSTEP_INSTALLATION_DOMAIN=SYSTEM make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for framework BioCocoa... Making all in subprojects of framework BioCocoa... Making all in subprojects of subproject BCFoundation... Making all for subproject BCAlignment... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCAnalysis... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneExpression... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneticCode... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCProteinStructure... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequence... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequenceIO... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSymbol... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCTools... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCUtils... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCFoundation... gmake[3]: Nothing to be done for 'internal-subproject-compile'. Making all for framework BioCocoa... gmake[2]: Nothing to be done for 'internal-framework-compile'. Copying resources into the framework wrapper... Copying resources from subprojects into the framework wrapper... Making install in subprojects of framework BioCocoa... Making install in subprojects of subproject BCFoundation... Making install for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-install'. Making install for framework BioCocoa... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/lib64/GNUstep/Frameworks... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/include... Installing framework BioCocoa... Installing headers... make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' + pushd /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64 ~/tmp/gnustep-BioCocoa-buildroot/usr/lib64 ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + for j in BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so ./ + for k in lib$j.so.*.* + ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2.2.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib64/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + popd ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) mode of './usr/lib64/libBioCocoa.so.2.2.2' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/gnustep-BioCocoa-buildroot/ (default) Compressing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) Adjusting library links in /usr/src/tmp/gnustep-BioCocoa-buildroot ./usr/lib64: libBioCocoa.so.2 -> libBioCocoa.so.2.2.2 Verifying ELF objects in /usr/src/tmp/gnustep-BioCocoa-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=strict) Hardlinking identical .pyc and .pyo files Processing files: gnustep-BioCocoa-2.2.2-alt3 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.29651 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + DOCDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + export DOCDIR + rm -rf /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + /bin/mkdir -p /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + cp -prL ChangeLog Authors.txt Publications.txt Readme.txt license.txt /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R go-w /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R a+rX /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + exit 0 warning: Symlink /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa destination changed from ./Versions/Current/BioCocoa to Versions/Current/BioCocoa warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib64/libBioCocoa.so.2.2.2 warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib64/libBioCocoa.so.2.2.2 warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib64/libBioCocoa.so.2.2.2 warning: absolute symlink: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib64/libBioCocoa.so.2.2.2 warning: Symlink /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so destination changed from ./Versions/Current/libBioCocoa.so to Versions/Current/libBioCocoa.so Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bh4tjw find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa -> ./Versions/Current/BioCocoa is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib64/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so -> ./Versions/Current/libBioCocoa.so is not going to provide anything find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.MPzUo0 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) Requires: libgnustep-BioCocoa = 2.2.2-alt3, gnustep-back, /usr/lib64/libBioCocoa.so.2.2.2 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.htMZYx Processing files: libgnustep-BioCocoa-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.qffH58 find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/libBioCocoa.so.2: 86 symbols, 17 bpp Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.DXlWEN find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) Provides: libBioCocoa.so.2()(64bit) = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Requires: libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libgnustep-base.so.1.24()(64bit) >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp, libobjc2.so.4()(64bit) >= set:mjyhn17r8TfASjqM4, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.YTKZJv Creating libgnustep-BioCocoa-debuginfo package Processing files: libgnustep-BioCocoa-devel-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lvXFgh find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.I4ZJh6 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h:107:9: fatal error: BioCocoa/BCGeneExpressionOmnibus.h: No such file or directory #import ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed, trying c++ mode x86_64-alt-linux-cpp: error trying to exec 'cc1plus': execvp: No such file or directory cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h:33:9: fatal error: BCAlignment.h: No such file or directory #import "BCAlignment.h" ^~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h:36:9: fatal error: BCInternal.h: No such file or directory #import "BCInternal.h" ^~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h: cpp failed Provides: gnustep-BioCocoa-devel = 2.2.2-alt3 Requires: gnustep-BioCocoa = 2.2.2-alt3, libgnustep-BioCocoa = 2.2.2-alt3, /usr/lib64/libBioCocoa.so.2, gnustep-base-devel Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.rHoQ07 Processing files: libgnustep-BioCocoa-debuginfo-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.2pGqfd find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bwY8Yl find-requires: running scripts (debuginfo) Provides: debug64(libBioCocoa.so.2) Requires: libgnustep-BioCocoa = 2.2.2-alt3, debug64(libc.so.6), debug64(libgnustep-base.so.1.24), debug64(libobjc2.so.4) Removing 1 extra deps from gnustep-BioCocoa due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to repentancy on gnustep-BioCocoa Wrote: /usr/src/RPM/RPMS/x86_64/gnustep-BioCocoa-2.2.2-alt3.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/libgnustep-BioCocoa-2.2.2-alt3.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/libgnustep-BioCocoa-devel-2.2.2-alt3.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/libgnustep-BioCocoa-debuginfo-2.2.2-alt3.x86_64.rpm (w2.lzdio) 11.73user 13.80system 0:30.24elapsed 84%CPU (0avgtext+0avgdata 56240maxresident)k 0inputs+0outputs (0major+2579003minor)pagefaults 0swaps 3.97user 1.49system 0:49.76elapsed 10%CPU (0avgtext+0avgdata 135412maxresident)k 8inputs+0outputs (0major+277116minor)pagefaults 0swaps --- gnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.repo 2014-02-14 00:43:45.000000000 +0000 +++ gnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.hasher 2024-01-28 10:43:19.833690793 +0000 @@ -3,3 +3,3 @@ /usr/lib64/GNUstep/Frameworks/BioCocoa.framework 40755 root:root -/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa 120777 root:root ./Versions/Current/BioCocoa +/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa 120777 root:root Versions/Current/BioCocoa /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Resources 120777 root:root Versions/Current/Resources @@ -16,3 +16,3 @@ /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/Current 120777 root:root 2 -/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so 120777 root:root ./Versions/Current/libBioCocoa.so +/usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so 120777 root:root Versions/Current/libBioCocoa.so /usr/share/doc/gnustep-BioCocoa-2.2.2 40755 root:root @@ -30,3 +30,3 @@ File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework 40755 root:root -File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa 120777 root:root ./Versions/Current/BioCocoa +File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/BioCocoa 120777 root:root Versions/Current/BioCocoa File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Resources 120777 root:root Versions/Current/Resources @@ -43,3 +43,3 @@ File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/Versions/Current 120777 root:root 2 -File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so 120777 root:root ./Versions/Current/libBioCocoa.so +File: /usr/lib64/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so 120777 root:root Versions/Current/libBioCocoa.so File: /usr/share/doc/gnustep-BioCocoa-2.2.2 40755 root:root @@ -50,2 +50,2 @@ File: /usr/share/doc/gnustep-BioCocoa-2.2.2/license.txt 100644 root:root 4d1b98213a3035f828c69adf03f040d2 -RPMIdentity: f6666f08046dd6668265899a6a2a9419a3aa2da03ceda6e64f83c1a07c46ef09b9aefd89df76a4c6e84feec80a37e26d6fcef8a658a08d2d1b7f20806749fce4 +RPMIdentity: 1c8c1623b586575ea0bb3ac79a96ebe12b1b3f84e28e682adaa1ed7700c1e7ebeb4cd54f705e698f4fdde9fec85094586f451b42da1213a6cd3ffe1894f69790 --- libgnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.repo 2014-02-14 00:43:45.000000000 +0000 +++ libgnustep-BioCocoa-2.2.2-alt3.x86_64.rpm.hasher 2024-01-28 10:43:19.929691845 +0000 @@ -5,12 +5,13 @@ Requires: libc.so.6(GLIBC_2.3)(64bit) -Requires: libgnustep-base.so.1.24()(64bit) >= set:qluHxuuPoZfxdDPjB2QIKgkWLAJdiVh1t16M5IG2shQZuFMuyizRJ3aI4rkhuxAVtlwed9yNSZw8B1pzQS5IMQYB8ihvNmTQbD5Tc0 +Requires: libc.so.6(GLIBC_2.3.4)(64bit) +Requires: libc.so.6(GLIBC_2.4)(64bit) +Requires: libgnustep-base.so.1.24()(64bit) >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp Requires: rpmlib(SetVersions) -Requires: libobjc2.so.4()(64bit) >= set:mjGI240xF2Vtlo0 -Requires: libpthread.so.0()(64bit) +Requires: libobjc2.so.4()(64bit) >= set:mjyhn17r8TfASjqM4 Requires: rtld(GNU_HASH) Requires: rpmlib(PayloadIsLzma) -Provides: libBioCocoa.so.2()(64bit) = set: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 +Provides: libBioCocoa.so.2()(64bit) = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Provides: libgnustep-BioCocoa = 2.2.2-alt3 File: /usr/lib64/libBioCocoa.so.2 120777 root:root libBioCocoa.so.2.2.2 -File: /usr/lib64/libBioCocoa.so.2.2.2 100644 root:root 01e7f63df97ce2f197378fd46b8e435a -RPMIdentity: b2ca6c284875137b78d3e8427e786d37bfa3c0e30b8e862ac873735fc74e4761589f4568af73b9a830ef804c376711935591718671101cbb82f140be74735113 +File: /usr/lib64/libBioCocoa.so.2.2.2 100644 root:root 367f77cc6f8f44d382f125622fcfa0e4 +RPMIdentity: 53064c0ad86267631d77fc5e34195aa1f678cfa6a4a2c64abdd0dfc079ef8c87ffb46f5d3bd909bbbd50494d7279d8d571442d034ec90478f9de5388a1704b18 --- libgnustep-BioCocoa-debuginfo-2.2.2-alt3.x86_64.rpm.repo 2014-02-14 00:43:45.000000000 +0000 +++ libgnustep-BioCocoa-debuginfo-2.2.2-alt3.x86_64.rpm.hasher 2024-01-28 10:43:20.010692733 +0000 @@ -1 +1,4 @@ +/usr/lib/debug/.build-id/71 40755 root:root +/usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d 120777 root:root ../../../../lib64/libBioCocoa.so.2.2.2 +/usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d.debug 120777 root:root ../../usr/lib64/libBioCocoa.so.2.2.2.debug /usr/lib/debug/usr/lib64/libBioCocoa.so.2.2.2.debug 100644 root:root @@ -32,6 +35,4 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m 100644 root:root -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h 100644 root:root /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m 100644 root:root /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h 100644 root:root -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h 100644 root:root /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m 100644 root:root @@ -68,2 +69,3 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m 100644 root:root +/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h 100644 root:root /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m 100644 root:root @@ -112,3 +114,2 @@ Requires: debug64(libobjc2.so.4) -Requires: debug64(libpthread.so.0) Requires: rpmlib(PayloadIsLzma) @@ -116,3 +117,6 @@ Provides: libgnustep-BioCocoa-debuginfo = 2.2.2-alt3 -File: /usr/lib/debug/usr/lib64/libBioCocoa.so.2.2.2.debug 100644 root:root 6b259092c843e6f76ae5d84fa00c87b9 +File: /usr/lib/debug/.build-id/71 40755 root:root +File: /usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d 120777 root:root ../../../../lib64/libBioCocoa.so.2.2.2 +File: /usr/lib/debug/.build-id/71/79bd1f2d252c3588a306d221495d7491dfbd8d.debug 120777 root:root ../../usr/lib64/libBioCocoa.so.2.2.2.debug +File: /usr/lib/debug/usr/lib64/libBioCocoa.so.2.2.2.debug 100644 root:root 9620245da7c276c0f012528775a5189f File: /usr/lib/debug/usr/lib64/libBioCocoa.so.2.debug 120777 root:root libBioCocoa.so.2.2.2.debug @@ -148,6 +152,4 @@ File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m 100644 root:root 301a35c6419258de6cc5343caf74e381 -File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h 100644 root:root 7bb1a6ab926af99a5c7e1db57999e30d File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m 100644 root:root 36361acc505c5b10e788123d07c9c9fe File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h 100644 root:root 4aaa7a496035cd95acafcded7e46adbf -File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h 100644 root:root 595c87c13b66e5db32f0941b1f123db9 File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m 100644 root:root 8538bfd65e688185c02504904dd8f225 @@ -184,2 +186,3 @@ File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m 100644 root:root ffcf1ddb9c14a2d92bfb46081f741449 +File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h 100644 root:root b2b1fdf5c19b8dcafd84b3329707c38c File: /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m 100644 root:root 2332c3cca0fb58763f69b0adf948acfe @@ -224,2 +227,2 @@ File: /usr/src/debug/gnustep-BioCocoa-2.2.2/derived_src/NSFramework_BioCocoa.m 100644 root:root 492923ed782111152ea4856a79134d83 -RPMIdentity: e7e09e2ec62fe4c4d81ea0d07106d4af84eed0ffd151dd4538aa20a8663df0758c86d93c2b5fd4c1fc6422ffec7a5450ee6ade322c29fe5e6ef5e5c6641fa531 +RPMIdentity: d9235177c31e18693ae95c43ddeb41f940986156967c6f5922819cf1f3f792a6b77c2723a6094da2e5ff6b01984106d29a0da8c56c8957dfc1b8312629b2bce2 --- libgnustep-BioCocoa-devel-2.2.2-alt3.x86_64.rpm.repo 2014-02-14 00:43:45.000000000 +0000 +++ libgnustep-BioCocoa-devel-2.2.2-alt3.x86_64.rpm.hasher 2024-01-28 10:43:20.092693631 +0000 @@ -111,2 +111,2 @@ File: /usr/lib64/libBioCocoa.so 120777 root:root libBioCocoa.so.2 -RPMIdentity: 3f95792f985943dd830ed24d0cd56f2feb75863a10470a871ef153596fda62b08dbff0239cf0bcfa2cde97b835397c2a7e00ddb4f79a6d874880f2627bffab59 +RPMIdentity: 3094f259c335b8bef01b4f0d6a9ed4fe190b5637ef48c74ae6f2a7cc4193019cdbb84f2d7de6d042cd27970141b296ae4eba3bfe3e667802ee38dc748b65d607