<86>Feb 12 09:24:50 userdel[4149999]: delete user 'rooter'
<86>Feb 12 09:24:50 userdel[4149999]: removed shadow group 'rooter' owned by 'rooter'
<86>Feb 12 09:24:50 groupadd[4150011]: group added to /etc/group: name=rooter, GID=1329
<86>Feb 12 09:24:50 groupadd[4150011]: group added to /etc/gshadow: name=rooter
<86>Feb 12 09:24:50 groupadd[4150011]: new group: name=rooter, GID=1329
<86>Feb 12 09:24:50 useradd[4150019]: new user: name=rooter, UID=1329, GID=1329, home=/root, shell=/bin/bash
<86>Feb 12 09:24:50 userdel[4150034]: delete user 'builder'
<86>Feb 12 09:24:50 userdel[4150034]: removed group 'builder' owned by 'builder'
<86>Feb 12 09:24:50 userdel[4150034]: removed shadow group 'builder' owned by 'builder'
<86>Feb 12 09:24:50 groupadd[4150048]: group added to /etc/group: name=builder, GID=1330
<86>Feb 12 09:24:50 groupadd[4150048]: group added to /etc/gshadow: name=builder
<86>Feb 12 09:24:50 groupadd[4150048]: new group: name=builder, GID=1330
<86>Feb 12 09:24:50 useradd[4150053]: new user: name=builder, UID=1330, GID=1330, home=/usr/src, shell=/bin/bash
<13>Feb 12 09:24:52 rpmi: xorg-proto-devel-2021.4-alt1 p9+272150.100.1.1 1621427342 installed
<13>Feb 12 09:24:52 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Feb 12 09:24:52 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:52 rpmi: libnl3-3.4.0-alt2 1507570084 installed
<13>Feb 12 09:24:52 rpmi: libibverbs-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:52 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed
<13>Feb 12 09:24:52 rpmi: libICE-1.0.9-alt1 1409902719 installed
<13>Feb 12 09:24:52 rpmi: libquadmath0-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:52 rpmi: udev-rules-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed
<13>Feb 12 09:24:52 rpmi: libquadmath8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:52 rpmi: libgfortran5-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:52 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed
<13>Feb 12 09:24:52 rpmi: librdmacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:52 rpmi: libnuma-2.0.11-alt1 1450022595 installed
<13>Feb 12 09:24:53 rpmi: libopenblas-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed
<13>Feb 12 09:24:53 rpmi: libibumad-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:53 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335455 installed
<13>Feb 12 09:24:53 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633315 installed
<13>Feb 12 09:24:53 rpmi: libicu65-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Feb 12 09:24:53 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed
<13>Feb 12 09:24:53 rpmi: libharfbuzz-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed
<13>Feb 12 09:24:53 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed
<13>Feb 12 09:24:53 rpmi: libexpat-2.4.3-alt1 p9+293696.100.1.1 1643124786 installed
<13>Feb 12 09:24:53 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed
Updating fonts cache: <29>Feb 12 09:24:54 fontconfig: Updating fonts cache: succeeded
[ DONE ]
<13>Feb 12 09:24:54 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228072 installed
<13>Feb 12 09:24:54 rpmi: libiptables-1.8.3-alt2 p9+238412.300.6.1 1570110065 installed
<13>Feb 12 09:24:54 rpmi: msulogin-1.0-alt1 1366288481 installed
<13>Feb 12 09:24:54 rpmi: mount-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Feb 12 09:24:54 rpmi: sysvinit-2.88-alt5 1424350685 installed
<13>Feb 12 09:24:54 rpmi: libharfbuzz-icu-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed
<13>Feb 12 09:24:54 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed
<13>Feb 12 09:24:54 rpmi: icu-utils-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Feb 12 09:24:54 rpmi: libicu-devel-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Feb 12 09:24:54 rpmi: libnetlink-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed
<13>Feb 12 09:24:54 rpmi: libibmad-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:54 rpmi: libibnetdisc-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:54 rpmi: libopenblas-devel-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed
<13>Feb 12 09:24:54 rpmi: libnuma-devel-2.0.11-alt1 1450022595 installed
<13>Feb 12 09:24:54 rpmi: libfftw3q-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Feb 12 09:24:54 rpmi: libICE-devel-1.0.9-alt1 1409902719 installed
<13>Feb 12 09:24:54 rpmi: libSM-devel-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed
<13>Feb 12 09:24:54 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed
<13>Feb 12 09:24:54 rpmi: xorg-printproto-devel-1.0.5-alt1 1303466042 installed
<13>Feb 12 09:24:54 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Feb 12 09:24:54 rpmi: libfftw3f-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Feb 12 09:24:54 rpmi: libfftw3l-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Feb 12 09:24:54 rpmi: pciids-20230127-alt1 p9+314437.100.1.1 1675177641 installed
<13>Feb 12 09:24:54 rpmi: tcsh-6.20.00-alt2 1503603377 installed
<13>Feb 12 09:24:54 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed
<13>Feb 12 09:24:54 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed
<13>Feb 12 09:24:55 rpmi: openmpi-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed
<13>Feb 12 09:24:55 rpmi: libpci-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed
<13>Feb 12 09:24:55 rpmi: pciutils-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed
<13>Feb 12 09:24:55 rpmi: libxblas-1.0.248-alt1.3 sisyphus+229150.100.1.1 1557388758 installed
<13>Feb 12 09:24:55 rpmi: liblapack-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed
<13>Feb 12 09:24:55 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902884 installed
<13>Feb 12 09:24:55 rpmi: libgsl-2.5-alt1 sisyphus.212796.100 1536590939 installed
<13>Feb 12 09:24:55 rpmi: libX11-locales-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Feb 12 09:24:55 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949347 installed
<13>Feb 12 09:24:55 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed
<13>Feb 12 09:24:55 rpmi: libX11-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Feb 12 09:24:55 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949422 installed
<13>Feb 12 09:24:55 rpmi: libXt-1.1.4-alt1 1369984716 installed
<13>Feb 12 09:24:55 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed
<13>Feb 12 09:24:55 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed
<13>Feb 12 09:24:55 rpmi: libXmu-1.1.3-alt1 sisyphus+225206.1200.1.2 1552949629 installed
<13>Feb 12 09:24:55 rpmi: libXp-1.0.2-alt1 1370421423 installed
<13>Feb 12 09:24:55 rpmi: libopenmotif4-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed
<13>Feb 12 09:24:56 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed
<13>Feb 12 09:24:56 rpmi: libX11-devel-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Feb 12 09:24:56 rpmi: libXrender-devel-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed
<13>Feb 12 09:24:56 rpmi: libXt-devel-1.1.4-alt1 1369984716 installed
<13>Feb 12 09:24:56 rpmi: libatm-2.5.1-alt6 p9+263604.300.3.1 1608575724 installed
<13>Feb 12 09:24:56 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696275 installed
<13>Feb 12 09:24:56 rpmi: chrooted-0.3.11-alt1 p9+249340.100.2.1 1586263298 installed
<13>Feb 12 09:24:56 rpmi: chrooted-resolv-0.3.1-alt2 1176155257 installed
<13>Feb 12 09:24:56 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Feb 12 09:24:56 rpmi: libgfortran8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:57 rpmi: gcc8-fortran-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:57 rpmi: gcc-fortran-8-alt2 p9+246536.100.3.1 1582643803 installed
<13>Feb 12 09:24:57 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Feb 12 09:24:57 rpmi: libstdc++8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:57 rpmi: gcc8-c++-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Feb 12 09:24:57 rpmi: gcc-c++-8-alt2 p9+246536.100.3.1 1582643803 installed
<13>Feb 12 09:24:57 rpmi: libgdbm-1.8.3-alt10 1454943313 installed
<13>Feb 12 09:24:57 rpmi: xml-utils-1:2.9.10-alt6 p9+266566.100.3.1 1614357016 installed
<13>Feb 12 09:24:57 rpmi: rpm-build-gir-0.7.3-alt2 p9+234356.40.2.1 1562933848 installed
<13>Feb 12 09:24:57 rpmi: libdevmapper-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed
<13>Feb 12 09:24:57 rpmi: udev-hwdb-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed
<13>Feb 12 09:24:57 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237682 installed
<13>Feb 12 09:24:57 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed
<13>Feb 12 09:24:57 rpmi: libsystemd-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed
<13>Feb 12 09:24:57 rpmi: hwclock-1:2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Feb 12 09:24:57 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed
<13>Feb 12 09:24:57 rpmi: losetup-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Feb 12 09:24:57 rpmi: lsblk-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Feb 12 09:24:57 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed
<13>Feb 12 09:24:57 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed
<13>Feb 12 09:24:57 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Feb 12 09:24:57 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Feb 12 09:24:57 rpmi: ca-certificates-2021.10.06-alt1 p9+289862.100.1.1 1637033643 installed
<13>Feb 12 09:24:57 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed
<13>Feb 12 09:24:57 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed
<13>Feb 12 09:24:58 rpmi: libcrypto1.1-1.1.1n-alt2 p9+297595.100.1.1 1648753395 installed
<13>Feb 12 09:24:58 rpmi: libkmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed
<13>Feb 12 09:24:58 rpmi: startup-0.9.9.10-alt1 p9+263519.100.1.1 1608121516 installed
<13>Feb 12 09:24:58 rpmi: systemd-utils-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed
<13>Feb 12 09:24:58 rpmi: kmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed
<13>Feb 12 09:24:58 rpmi: dmsetup-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed
<86>Feb 12 09:24:58 groupadd[4183677]: group added to /etc/group: name=tape, GID=499
<86>Feb 12 09:24:58 groupadd[4183677]: group added to /etc/gshadow: name=tape
<86>Feb 12 09:24:58 groupadd[4183677]: new group: name=tape, GID=499
<86>Feb 12 09:24:58 groupadd[4183714]: group added to /etc/group: name=dialout, GID=498
<86>Feb 12 09:24:58 groupadd[4183714]: group added to /etc/gshadow: name=dialout
<86>Feb 12 09:24:58 groupadd[4183714]: new group: name=dialout, GID=498
<86>Feb 12 09:24:58 groupadd[4183766]: group added to /etc/group: name=input, GID=497
<86>Feb 12 09:24:58 groupadd[4183766]: group added to /etc/gshadow: name=input
<86>Feb 12 09:24:58 groupadd[4183766]: new group: name=input, GID=497
<86>Feb 12 09:24:58 groupadd[4183810]: group added to /etc/group: name=video, GID=496
<86>Feb 12 09:24:58 groupadd[4183810]: group added to /etc/gshadow: name=video
<86>Feb 12 09:24:58 groupadd[4183810]: new group: name=video, GID=496
<86>Feb 12 09:24:58 groupadd[4183847]: group added to /etc/group: name=render, GID=495
<86>Feb 12 09:24:58 groupadd[4183847]: group added to /etc/gshadow: name=render
<86>Feb 12 09:24:58 groupadd[4183847]: new group: name=render, GID=495
<86>Feb 12 09:24:58 groupadd[4183893]: group added to /etc/group: name=vmusers, GID=494
<86>Feb 12 09:24:58 groupadd[4183893]: group added to /etc/gshadow: name=vmusers
<86>Feb 12 09:24:58 groupadd[4183893]: new group: name=vmusers, GID=494
<13>Feb 12 09:24:58 rpmi: udev-1:247.13-alt1 p9+313189.100.1.1 1673457063 installed
<13>Feb 12 09:24:58 rpmi: libssl1.1-1.1.1n-alt2 p9+297595.100.1.1 1648753395 installed
<13>Feb 12 09:24:58 rpmi: libpython3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed
<13>Feb 12 09:24:58 rpmi: python3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed
<13>Feb 12 09:24:58 rpmi: python3-base-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed
<13>Feb 12 09:24:58 rpmi: glib2-devel-2.60.7-alt1 p9+237353.100.2.2 1568372980 installed
<13>Feb 12 09:24:58 rpmi: libharfbuzz-devel-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed
<13>Feb 12 09:24:58 rpmi: libfreetype-devel-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed
<13>Feb 12 09:24:59 rpmi: fontconfig-devel-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed
<13>Feb 12 09:24:59 rpmi: libXft-devel-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed
<86>Feb 12 09:24:59 groupadd[4192706]: group added to /etc/group: name=iputils, GID=493
<86>Feb 12 09:24:59 groupadd[4192706]: group added to /etc/gshadow: name=iputils
<86>Feb 12 09:24:59 groupadd[4192706]: new group: name=iputils, GID=493
<86>Feb 12 09:24:59 useradd[4192727]: new user: name=iputils, UID=499, GID=493, home=/dev/null, shell=/dev/null
<86>Feb 12 09:24:59 groupadd[4192747]: group added to /etc/group: name=netadmin, GID=492
<86>Feb 12 09:24:59 groupadd[4192747]: group added to /etc/gshadow: name=netadmin
<86>Feb 12 09:24:59 groupadd[4192747]: new group: name=netadmin, GID=492
<13>Feb 12 09:24:59 rpmi: iputils-20190709-alt3 p9+281756.100.1.1 1628006690 installed
sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory
<13>Feb 12 09:24:59 rpmi: iproute2-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed
<13>Feb 12 09:24:59 rpmi: rdma-core-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:59 rpmi: ibacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:59 rpmi: rdma-core-devel-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Feb 12 09:24:59 rpmi: openmpi-devel-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed
<13>Feb 12 09:24:59 rpmi: libopenmotif-devel-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed
<13>Feb 12 09:24:59 rpmi: libgsl-devel-2.5-alt1 sisyphus.212796.100 1536590939 installed
<13>Feb 12 09:24:59 rpmi: liblapack-devel-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed
<13>Feb 12 09:24:59 rpmi: libfftw3-devel-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Feb 12 09:24:59 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed
<13>Feb 12 09:24:59 rpmi: imake-1.0.7-alt3 1518797773 installed
<13>Feb 12 09:24:59 rpmi: chrpath-0.16-alt1 1453066315 installed
Building target platforms: x86_64
Building for target x86_64
Wrote: /usr/src/in/nosrpm/gromacs-4.0.7-alt8.nosrc.rpm (w1.gzdio)
<13>Feb 12 09:25:01 rpmi: libtool_1.5-3:1.5.26-alt12 1533413564 installed
Installing gromacs-4.0.7-alt8.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.21676
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf gromacs-4.0.7
+ echo 'Source #0 (gromacs-4.0.7.tar.gz):'
Source #0 (gromacs-4.0.7.tar.gz):
+ /bin/gzip -dc /usr/src/RPM/SOURCES/gromacs-4.0.7.tar.gz
+ /bin/tar -xf -
+ cd gromacs-4.0.7
+ /bin/chmod -c -Rf u+rwX,go-w .
+ echo 'Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):'
Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):
+ /usr/bin/patch -p0
patching file configure.ac
patching file src/tools/Makefile.am
+ sed -i 's|lib/openmpi|lib64/openmpi|' configure.ac
++ find ./ -name Makefile.am
+ sed -i 's|^\(AM_CPPFLAGS.*\)|\1 -g|' ./src/tools/Makefile.am ./src/ngmx/Makefile.am ./src/mdlib/Makefile.am ./src/kernel/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile.am ./src/gmxlib/nonbonded/nb_kernel/Makefile.am ./src/gmxlib/nonbonded/Makefile.am ./src/gmxlib/gmx_lapack/Makefile.am ./src/gmxlib/gmx_blas/Makefile.am ./src/gmxlib/Makefile.am ./src/contrib/Makefile.am ./src/Makefile.am ./share/tutor/water/Makefile.am ./share/tutor/speptide/Makefile.am ./share/tutor/nmr2/Makefile.am ./share/tutor/nmr1/Makefile.am ./share/tutor/mixed/Makefile.am ./share/tutor/methanol/Makefile.am ./share/tutor/gmxdemo/Makefile.am ./share/tutor/Makefile.am ./share/top/Makefile.am ./share/template/Makefile.am ./share/html/online/Makefile.am ./share/html/images/Makefile.am ./share/html/Makefile.am ./share/Makefile.am ./scripts/Makefile.am ./man/man1/Makefile.am ./man/Makefile.am ./include/types/Makefile.am ./include/Makefile.am ./admin/Makefile.am ./Makefile.am
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.21676
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
++ mpi-selector --list
++ grep openmpi
+ mpi-selector --set openmpi
+ source /etc/profile.d/mpi-selector.sh
++ mpi_selector_dir=/var/lib/mpi-selector/data
++ mpi_selector_homefile=/usr/src/.mpi-selector
++ mpi_selector_sysfile=/etc/sysconfig/mpi-selector
++ mpi_selection=
++ test -f /usr/src/.mpi-selector
+++ cat /usr/src/.mpi-selector
++ mpi_selection=openmpi
++ test openmpi '!=' '' -a -f /var/lib/mpi-selector/data/openmpi.sh
++ . /var/lib/mpi-selector/data/openmpi.sh
+++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+++ grep -q /usr/lib64/openmpi/bin
+++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+++ export PATH
+++ echo
+++ grep -q /usr/lib64/openmpi/lib
+++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++ export LD_LIBRARY_PATH
+++ echo
+++ grep -q /usr/lib64/openmpi/man
+++ MANPATH=/usr/lib64/openmpi/man:
+++ export MANPATH
+ export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib'
+ OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib'
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=|g' acinclude.m4
+ autoreconf -fisv
autoreconf-default: Entering directory `.'
autoreconf-default: configure.ac: not using Gettext
autoreconf-default: running: aclocal --force 
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: configure.ac: tracing
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: libtoolize --force
You should update your `aclocal.m4' by running aclocal.
Putting files in AC_CONFIG_AUX_DIR, `config'.
autoreconf-default: configure.ac: not using Intltool
autoreconf-default: configure.ac: not using gtk-doc
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: /usr/bin/autoconf-2.60 --force
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: /usr/bin/autoheader-2.60 --force
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: automake --add-missing --force-missing
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:331: installing 'config/compile'
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
src/tools/Makefile.am:68: warning: 'LDFLAGS' is a user variable, you should not override it;
src/tools/Makefile.am:68: use 'AM_LDFLAGS' instead
autoreconf-default: Leaving directory `.'
+ mkdir single
+ pushd single
~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7
+ buildThis float disable
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FFLAGS
+ FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FCFLAGS
+ '[' -n '' ']'
++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2'
++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g'
+ ASFLAGS=
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix= --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... x86_64-alt-linux-gnu
checking host system type... x86_64-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '1330' is supported by ustar format... yes
checking whether GID '1330' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for x86_64-alt-linux-cc... no
checking for x86_64-alt-linux-icc... no
checking for x86_64-alt-linux-xlc... no
checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-alt-linux-gcc accepts -g... yes
checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed
checking whether x86_64-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-alt-linux-gcc... none
checking for x86_64-alt-linux-f77... no
checking for x86_64-alt-linux-ifort... no
checking for x86_64-alt-linux-xlf... no
checking for x86_64-alt-linux-xlf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fl32... no
checking for x86_64-alt-linux-g77... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-f90... no
checking for x86_64-alt-linux-xlf90... no
checking for x86_64-alt-linux-pgf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fort... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of x86_64-alt-linux-gcc... none
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... x86_64-alt-linux-gcc -E
checking whether x86_64-alt-linux-gcc accepts -O3... yes
checking whether x86_64-alt-linux-gcc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alt-linux-g++ accepts -g... yes
checking dependency style of x86_64-alt-linux-g++... none
checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok
checking for objdir... .libs
checking for x86_64-alt-linux-ar... no
checking for ar... ar
checking for x86_64-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for x86_64-alt-linux-strip... no
checking for strip... strip
checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC
checking if x86_64-alt-linux-gcc PIC flag -fPIC works... yes
checking if x86_64-alt-linux-gcc static flag -static works... no
checking if x86_64-alt-linux-gcc supports -c -o file.o... yes
checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC
checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes
checking if x86_64-alt-linux-g++ static flag -static works... no
checking if x86_64-alt-linux-g++ supports -c -o file.o... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 8
checking size of long long int... (cached) 8
checking size of off_t... (cached) 8
checking size of void*... 8
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports X86_64 SSE instructions... yes
checking whether byte ordering is bigendian... (cached) no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j16
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_x86_64_sse
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s
mkdir .libs
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse_test_asm.o
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/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse.o
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c: In function 'nb_kernel_x86_64_sse_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:209:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:212:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_x86_64_sse_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
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make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_x86_64_sse.la  nb_kernel010_x86_64_sse.lo nb_kernel030_x86_64_sse.lo nb_kernel100_x86_64_sse.lo nb_kernel101_x86_64_sse.lo nb_kernel102_x86_64_sse.lo nb_kernel103_x86_64_sse.lo nb_kernel104_x86_64_sse.lo nb_kernel110_x86_64_sse.lo nb_kernel111_x86_64_sse.lo nb_kernel112_x86_64_sse.lo nb_kernel113_x86_64_sse.lo nb_kernel114_x86_64_sse.lo nb_kernel130_x86_64_sse.lo nb_kernel131_x86_64_sse.lo nb_kernel132_x86_64_sse.lo nb_kernel133_x86_64_sse.lo nb_kernel134_x86_64_sse.lo nb_kernel200_x86_64_sse.lo nb_kernel201_x86_64_sse.lo nb_kernel202_x86_64_sse.lo nb_kernel203_x86_64_sse.lo nb_kernel204_x86_64_sse.lo nb_kernel210_x86_64_sse.lo nb_kernel211_x86_64_sse.lo nb_kernel212_x86_64_sse.lo nb_kernel213_x86_64_sse.lo nb_kernel214_x86_64_sse.lo nb_kernel230_x86_64_sse.lo nb_kernel231_x86_64_sse.lo nb_kernel232_x86_64_sse.lo nb_kernel233_x86_64_sse.lo nb_kernel234_x86_64_sse.lo nb_kernel300_x86_64_sse.lo nb_kernel301_x86_64_sse.lo nb_kernel302_x86_64_sse.lo nb_kernel303_x86_64_sse.lo nb_kernel304_x86_64_sse.lo nb_kernel310_x86_64_sse.lo nb_kernel311_x86_64_sse.lo nb_kernel312_x86_64_sse.lo nb_kernel313_x86_64_sse.lo nb_kernel314_x86_64_sse.lo nb_kernel330_x86_64_sse.lo nb_kernel331_x86_64_sse.lo nb_kernel332_x86_64_sse.lo nb_kernel333_x86_64_sse.lo nb_kernel334_x86_64_sse.lo nb_kernel400_x86_64_sse.lo nb_kernel410_x86_64_sse.lo nb_kernel430_x86_64_sse.lo nb_kernel_x86_64_sse_test_asm.lo nb_kernel_x86_64_sse.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_x86_64_sse.a .libs/nb_kernel010_x86_64_sse.o .libs/nb_kernel030_x86_64_sse.o .libs/nb_kernel100_x86_64_sse.o .libs/nb_kernel101_x86_64_sse.o .libs/nb_kernel102_x86_64_sse.o .libs/nb_kernel103_x86_64_sse.o .libs/nb_kernel104_x86_64_sse.o .libs/nb_kernel110_x86_64_sse.o .libs/nb_kernel111_x86_64_sse.o .libs/nb_kernel112_x86_64_sse.o .libs/nb_kernel113_x86_64_sse.o .libs/nb_kernel114_x86_64_sse.o .libs/nb_kernel130_x86_64_sse.o .libs/nb_kernel131_x86_64_sse.o .libs/nb_kernel132_x86_64_sse.o .libs/nb_kernel133_x86_64_sse.o .libs/nb_kernel134_x86_64_sse.o .libs/nb_kernel200_x86_64_sse.o .libs/nb_kernel201_x86_64_sse.o .libs/nb_kernel202_x86_64_sse.o .libs/nb_kernel203_x86_64_sse.o .libs/nb_kernel204_x86_64_sse.o .libs/nb_kernel210_x86_64_sse.o .libs/nb_kernel211_x86_64_sse.o .libs/nb_kernel212_x86_64_sse.o .libs/nb_kernel213_x86_64_sse.o .libs/nb_kernel214_x86_64_sse.o .libs/nb_kernel230_x86_64_sse.o .libs/nb_kernel231_x86_64_sse.o .libs/nb_kernel232_x86_64_sse.o .libs/nb_kernel233_x86_64_sse.o .libs/nb_kernel234_x86_64_sse.o .libs/nb_kernel300_x86_64_sse.o .libs/nb_kernel301_x86_64_sse.o .libs/nb_kernel302_x86_64_sse.o .libs/nb_kernel303_x86_64_sse.o .libs/nb_kernel304_x86_64_sse.o .libs/nb_kernel310_x86_64_sse.o .libs/nb_kernel311_x86_64_sse.o .libs/nb_kernel312_x86_64_sse.o .libs/nb_kernel313_x86_64_sse.o .libs/nb_kernel314_x86_64_sse.o .libs/nb_kernel330_x86_64_sse.o .libs/nb_kernel331_x86_64_sse.o .libs/nb_kernel332_x86_64_sse.o .libs/nb_kernel333_x86_64_sse.o .libs/nb_kernel334_x86_64_sse.o .libs/nb_kernel400_x86_64_sse.o .libs/nb_kernel410_x86_64_sse.o .libs/nb_kernel430_x86_64_sse.o .libs/nb_kernel_x86_64_sse_test_asm.o .libs/nb_kernel_x86_64_sse.o
ranlib .libs/libnb_kernel_x86_64_sse.a
creating libnb_kernel_x86_64_sse.la
(cd .libs && rm -f libnb_kernel_x86_64_sse.la && ln -s ../libnb_kernel_x86_64_sse.la libnb_kernel_x86_64_sse.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb  -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating single precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:205:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:201:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:198:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:204:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:211:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:212:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:222:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:189:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:185:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:182:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:188:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:192:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:206:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:196:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:195:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:192:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:205:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:206:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:216:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:281:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:290:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:277:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:274:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:292:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:291:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:289:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:288:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:283:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:292:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:279:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:276:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:294:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:293:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:291:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:290:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:144:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:218:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:230:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:217:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:214:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:229:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:238:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:307:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:316:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:303:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:300:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:318:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:317:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:315:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:314:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:458:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:445:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:454:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:441:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:438:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:455:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:453:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:444:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:457:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:451:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:452:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:488:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:475:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:484:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:471:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:468:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:485:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:483:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:474:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:487:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:481:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:482:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:232:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:241:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:228:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:225:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:240:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:231:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:249:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:329:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:316:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:325:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:312:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:309:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:327:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:326:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:315:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:328:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:322:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:352:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:339:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:348:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:335:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:332:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:350:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:349:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:338:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:353:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:351:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:214:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:215:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:460:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:447:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:456:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:443:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:440:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:457:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:455:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:446:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:459:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:453:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:454:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:484:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:493:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:480:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:477:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:495:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:494:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:492:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:483:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:498:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:496:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:490:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:491:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:501:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:295:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:282:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:279:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:297:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:296:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:294:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:292:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:293:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:694:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:485:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:472:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:481:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:468:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:465:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:482:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:480:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:471:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:484:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:746:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:507:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:516:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:503:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:500:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:518:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:517:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:515:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:506:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:521:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:519:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:524:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:320:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:307:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:304:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:322:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:321:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:319:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:317:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:318:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:469:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:465:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:452:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:449:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:466:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:464:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:468:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:462:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:463:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:473:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:297:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:284:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:281:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:299:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:298:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:296:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:294:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:295:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:139:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:300:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:206:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:215:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:202:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:199:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:214:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:205:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:209:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:223:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:333:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:329:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:316:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:313:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:331:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:330:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:328:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:332:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:326:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:327:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:198:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:325:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:321:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:308:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:305:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:323:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:322:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:320:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:324:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:498:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:494:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:481:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:478:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:495:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:493:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:497:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:491:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:492:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:502:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:471:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:467:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:454:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:451:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:468:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:466:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:470:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:464:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:465:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:475:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:211:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:499:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:356:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:352:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:339:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:336:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:354:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:353:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:351:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:357:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:355:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:503:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:490:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:487:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:505:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:504:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:502:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:508:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:506:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:500:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:501:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:511:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:209:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:454:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:277:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:706:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:495:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:491:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:478:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:475:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:492:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:490:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:494:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:499:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:225:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:234:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:221:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:218:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:233:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:224:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:242:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:208:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:453:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:757:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:526:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:513:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:510:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:528:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:527:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:525:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:531:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:529:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:534:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:195:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:471:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:490:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:504:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:340:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:327:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:336:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:323:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:320:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:338:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:337:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:335:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:339:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:221:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:537:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:351:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:229:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:255:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:474:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:342:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:329:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:338:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:325:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:322:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:340:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:339:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:337:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:341:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:150:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:343:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:247:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:306:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:792:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:811:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:826:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:841:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:856:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:582:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:569:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:578:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:565:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:562:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:579:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:577:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:568:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:581:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:230:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:256:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:555:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:373:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:360:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:369:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:356:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:353:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:371:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:370:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:359:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:374:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:372:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:331:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:358:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:385:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:412:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:493:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:837:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:852:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:867:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:882:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:897:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:912:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:927:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:942:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:957:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:610:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:597:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:606:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:593:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:590:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:607:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:605:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:596:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:609:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:193:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:267:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:528:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:354:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:341:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:350:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:337:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:334:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:352:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:351:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:349:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:353:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:795:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:584:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:571:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:580:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:567:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:564:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:581:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:579:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:570:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:583:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:147:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:231:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:218:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:214:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:211:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:217:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:230:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:221:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:235:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:249:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:302:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:559:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:573:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:588:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:392:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:379:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:388:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:375:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:372:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:390:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:389:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:378:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:393:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:391:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:250:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:237:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:233:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:230:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:236:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:249:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:243:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:244:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:254:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:158:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:177:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:269:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:256:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:265:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:252:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:249:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:255:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:268:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:273:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:161:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:313:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:340:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:367:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:394:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:421:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:448:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:475:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:529:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:855:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:870:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:885:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:900:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:915:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:930:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:945:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:960:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:975:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:606:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:615:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:602:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:599:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:617:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:616:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:614:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:605:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:620:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:618:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:623:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:272:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:374:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:401:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:428:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:455:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:509:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:803:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:835:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:850:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:865:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:880:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:596:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:583:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:592:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:579:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:576:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:593:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:591:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:582:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:595:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:359:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:386:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:413:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:440:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:467:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:521:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:548:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:864:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1008:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:625:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:634:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:621:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:618:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:636:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:635:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:633:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:624:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:639:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:637:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:642:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo                   nb_kernel_x86_64_sse/libnb_kernel_x86_64_sse.la                    	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a
mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a
(cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.libs/libnb_kernel_x86_64_sse.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel430_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel410_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel400_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel334_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel333_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel332_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel331_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel330_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel314_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel313_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel312_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel311_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel310_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel304_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel303_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel302_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel301_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel300_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel234_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel233_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel232_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel231_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel230_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel214_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel213_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel212_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel211_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel210_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel204_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel203_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel202_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel201_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel200_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel134_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel133_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel132_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel131_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel130_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel114_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel113_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel112_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel111_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel110_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel104_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel103_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel102_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel101_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel100_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel030_x86_64_sse.o 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ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
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Making all in gmx_blas
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mkdir .libs
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
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Making all in gmx_lapack
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mkdir .libs
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../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
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mkdir: cannot create directory '.libs': File exists
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../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
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../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
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../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
In file included from ../../../src/gmxlib/maths.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_multisystem':
../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable]
   int *rank;
        ^~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable]
   char      **argv;
               ^~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized':
../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm':
../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                        ^~
../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                     ^~
../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                   ^
../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                 ^
../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                         ^~~~~~~
../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
               ^~~~~~~~~
../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
          ^~~~
../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
        ^
../../../src/gmxlib/network.c: In function 'gmx_finalize':
../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable]
   int ret;
       ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx.la -rpath /usr/lib64 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
x86_64-alt-linux-gcc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libgmx.so.5 -o .libs/libgmx.so.5.0.0
(cd .libs && rm -f libgmx.so.5 && ln -s libgmx.so.5.0.0 libgmx.so.5)
(cd .libs && rm -f libgmx.so && ln -s libgmx.so.5.0.0 libgmx.so)
creating libgmx.la
(cd .libs && rm -f libgmx.la && ln -s ../libgmx.la libgmx.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
../../../src/mdlib/fftgrid.c: In function 'mk_fftgrid':
../../../src/mdlib/fftgrid.c:97:25: warning: unused variable 'maxlocalsize' [-Wunused-variable]
     int           x1,y1,maxlocalsize;
                         ^~~~~~~~~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_pp_init':
../../../src/mdlib/pme_pp.c:112:7: warning: unused variable 'rank' [-Wunused-variable]
   int rank;
       ^~~~
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_recv_q_x':
../../../src/mdlib/pme_pp.c:261:9: warning: unused variable 'charge_pp' [-Wunused-variable]
   real *charge_pp;
         ^~~~~~~~~
../../../src/mdlib/pme_pp.c:260:25: warning: unused variable 'sender' [-Wunused-variable]
   int  nat=0,q,messages,sender;
                         ^~~~~~
../../../src/mdlib/pme_pp.c:260:16: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int  nat=0,q,messages,sender;
                ^~~~~~~~
../../../src/mdlib/pme_pp.c:260:14: warning: unused variable 'q' [-Wunused-variable]
   int  nat=0,q,messages,sender;
              ^
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_send_force_vir_ener':
../../../src/mdlib/pme_pp.c:446:7: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int messages,ind_start,ind_end,receiver;
       ^~~~~~~~
At top level:
../../../src/mdlib/pme_pp.c:133:13: warning: 'gmx_pme_send_q_x_wait' defined but not used [-Wunused-function]
 static void gmx_pme_send_q_x_wait(gmx_domdec_t *dd)
             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c: In function 'convolution':
../../../src/mdlib/pppm.c:384:14: warning: unused variable 'jend' [-Wunused-variable]
   int jstart,jend;
              ^~~~
../../../src/mdlib/pppm.c:384:7: warning: unused variable 'jstart' [-Wunused-variable]
   int jstart,jend;
       ^~~~~~
At top level:
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1549:20: warning: unused variable 'timesteps' [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
../../../src/mdlib/force.c:1548:32: warning: unused variable 't_wait' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1548:20: warning: unused variable 't_fnbf' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
At top level:
../../../src/mdlib/force.c:1548:20: warning: 't_fnbf' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1548:32: warning: 't_wait' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1549:20: warning: 'timesteps' defined but not used [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
In file included from ../../../src/mdlib/force.c:69:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'pmeredist':
../../../src/mdlib/pme.c:380:12: warning: unused variable 'ii' [-Wunused-variable]
     int i, ii;
            ^~
../../../src/mdlib/pme.c:380:9: warning: unused variable 'i' [-Wunused-variable]
     int i, ii;
         ^
../../../src/mdlib/pme.c:379:10: warning: variable 'idxa' set but not used [-Wunused-but-set-variable]
     int *idxa;
          ^~~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid_dd':
../../../src/mdlib/pme.c:660:18: warning: unused variable 'to' [-Wunused-variable]
     real *from, *to;
                  ^~
../../../src/mdlib/pme.c:660:11: warning: unused variable 'from' [-Wunused-variable]
     real *from, *to;
           ^~~~
../../../src/mdlib/pme.c:659:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:658:15: warning: unused variable 'localsize' [-Wunused-variable]
     int la12r,localsize;
               ^~~~~~~~~
../../../src/mdlib/pme.c:658:9: warning: unused variable 'la12r' [-Wunused-variable]
     int la12r,localsize;
         ^~~~~
../../../src/mdlib/pme.c:657:11: warning: unused variable 'i' [-Wunused-variable]
     int b,i;
           ^
../../../src/mdlib/pme.c:657:9: warning: unused variable 'b' [-Wunused-variable]
     int b,i;
         ^
../../../src/mdlib/pme.c:656:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid':
../../../src/mdlib/pme.c:756:16: warning: unused variable 'maxproc' [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:755:16: warning: unused variable 'localsize' [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:754:9: warning: unused variable 'i' [-Wunused-variable]
     int i;
         ^
../../../src/mdlib/pme.c:753:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: unused variable 'bFirst' [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c: In function 'spread_q_bsplines':
../../../src/mdlib/pme.c:840:20: warning: unused variable 'bndsize' [-Wunused-variable]
     int localsize, bndsize;
                    ^~~~~~~
../../../src/mdlib/pme.c:840:9: warning: unused variable 'localsize' [-Wunused-variable]
     int localsize, bndsize;
         ^~~~~~~~~
../../../src/mdlib/pme.c:835:16: warning: unused variable 'i' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
                ^
../../../src/mdlib/pme.c:835:14: warning: unused variable 'b' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
              ^
../../../src/mdlib/pme.c:834:20: warning: unused variable 'ol' [-Wunused-variable]
     pme_overlap_t *ol;
                    ^~
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:656:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: 'bFirst' defined but not used [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c:753:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:755:16: warning: 'localsize' defined but not used [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:756:16: warning: 'maxproc' defined but not used [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable]
   float  cycles_ppdpme,cycles_pme,cycles_force;
                        ^~~~~~~~~~
../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable]
   real   e,v,dvdl;
          ^
../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable]
   matrix boxs;
          ^~~~
../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable]
   bool   bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces;
                                                         ^~~
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum':
../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                               ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                      ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
          ^~~
At top level:
../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable]
 static bool              wc_barrier=FALSE;
                          ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode':
../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable]
     ivec coord,coord_pme;
                ^~~~~~~~~
../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable]
     ivec coord,coord_pme;
          ^~~~~
../../../src/mdlib/domdec.c: In function 'receive_vir_ener':
../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                              ^~~~
../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'make_pp_communicator':
../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable]
     int  i,rank,*buf;
                  ^~~
../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank,*buf;
            ^~~~
../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,rank,*buf;
          ^
../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid':
../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable]
     int  *buf;
           ^~~
../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'split_communicator':
../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank;
            ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
At top level:
../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function]
 static int *dd_pmenodes(t_commrec *cr)
             ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
x86_64-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0
(cd .libs && rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5)
(cd .libs && rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so)
creating libmd.la
(cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'gprod':
../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess.a
creating libgmxpreprocess.la
(cd .libs && rm -f libgmxpreprocess.la && ln -s ../libgmxpreprocess.la libgmxpreprocess.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+4)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: *** No rule to make target '.libs/addconf.o', needed by 'genbox'.  Stop.
make[3]: *** Waiting for unfinished jobs....
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[2]: *** [Makefile:387: all-recursive] Error 1
make[1]: *** [Makefile:326: all] Error 2
make: *** [Makefile:415: all-recursive] Error 1
error: Bad exit status from /usr/src/tmp/rpm-tmp.21676 (%build)


RPM build errors:
    Bad exit status from /usr/src/tmp/rpm-tmp.21676 (%build)
Command exited with non-zero status 1
133.53user 50.65system 0:30.44elapsed 604%CPU (0avgtext+0avgdata 103596maxresident)k
0inputs+0outputs (0major+12375457minor)pagefaults 0swaps
hsh-rebuild: rebuild of `gromacs-4.0.7-alt8.src.rpm' failed.
Command exited with non-zero status 1
2.64user 1.49system 0:44.16elapsed 9%CPU (0avgtext+0avgdata 120656maxresident)k
0inputs+0outputs (35075major+291084minor)pagefaults 0swaps