<86>Mar 20 07:30:24 userdel[3585711]: delete user 'rooter'
<86>Mar 20 07:30:24 userdel[3585711]: removed group 'rooter' owned by 'rooter'
<86>Mar 20 07:30:24 userdel[3585711]: removed shadow group 'rooter' owned by 'rooter'
<86>Mar 20 07:30:24 groupadd[3585716]: group added to /etc/group: name=rooter, GID=690
<86>Mar 20 07:30:24 groupadd[3585716]: group added to /etc/gshadow: name=rooter
<86>Mar 20 07:30:24 groupadd[3585716]: new group: name=rooter, GID=690
<86>Mar 20 07:30:24 useradd[3585720]: new user: name=rooter, UID=690, GID=690, home=/root, shell=/bin/bash
<86>Mar 20 07:30:24 userdel[3585729]: delete user 'builder'
<86>Mar 20 07:30:24 userdel[3585729]: removed group 'builder' owned by 'builder'
<86>Mar 20 07:30:24 userdel[3585729]: removed shadow group 'builder' owned by 'builder'
<86>Mar 20 07:30:24 groupadd[3585738]: group added to /etc/group: name=builder, GID=691
<86>Mar 20 07:30:24 groupadd[3585738]: group added to /etc/gshadow: name=builder
<86>Mar 20 07:30:24 groupadd[3585738]: new group: name=builder, GID=691
<86>Mar 20 07:30:24 useradd[3585744]: new user: name=builder, UID=691, GID=691, home=/usr/src, shell=/bin/bash
<13>Mar 20 07:30:27 rpmi: xorg-proto-devel-2021.4-alt1 p9+272150.100.1.1 1621427342 installed
<13>Mar 20 07:30:27 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Mar 20 07:30:27 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:27 rpmi: libnl3-3.4.0-alt2 1507570084 installed
<13>Mar 20 07:30:27 rpmi: libibverbs-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:27 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed
<13>Mar 20 07:30:27 rpmi: libICE-1.0.9-alt1 1409902719 installed
<13>Mar 20 07:30:27 rpmi: libquadmath0-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:27 rpmi: udev-rules-1:247.11-alt1 p9+293887.400.6.1 1643984325 installed
<13>Mar 20 07:30:27 rpmi: libquadmath8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:27 rpmi: libgfortran5-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:27 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed
<13>Mar 20 07:30:27 rpmi: librdmacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:27 rpmi: libnuma-2.0.11-alt1 1450022595 installed
<13>Mar 20 07:30:27 rpmi: libopenblas-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed
<13>Mar 20 07:30:27 rpmi: libibumad-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:27 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335455 installed
<13>Mar 20 07:30:27 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633315 installed
<13>Mar 20 07:30:28 rpmi: libicu65-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Mar 20 07:30:28 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed
<13>Mar 20 07:30:28 rpmi: libharfbuzz-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed
<13>Mar 20 07:30:28 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed
<13>Mar 20 07:30:28 rpmi: libexpat-2.4.3-alt1 p9+293696.100.1.1 1643124786 installed
<13>Mar 20 07:30:28 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed
Updating fonts cache: <29>Mar 20 07:30:29 fontconfig: Updating fonts cache: succeeded
[ DONE ]
<13>Mar 20 07:30:29 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228072 installed
<13>Mar 20 07:30:29 rpmi: libiptables-1.8.3-alt2 p9+238412.300.6.1 1570110065 installed
<13>Mar 20 07:30:29 rpmi: msulogin-1.0-alt1 1366288481 installed
<13>Mar 20 07:30:29 rpmi: mount-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Mar 20 07:30:29 rpmi: sysvinit-2.88-alt5 1424350685 installed
<13>Mar 20 07:30:29 rpmi: libharfbuzz-icu-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed
<13>Mar 20 07:30:29 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed
<13>Mar 20 07:30:29 rpmi: icu-utils-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Mar 20 07:30:29 rpmi: libicu-devel-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed
<13>Mar 20 07:30:29 rpmi: libnetlink-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed
<13>Mar 20 07:30:29 rpmi: libibmad-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:29 rpmi: libibnetdisc-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:29 rpmi: libopenblas-devel-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed
<13>Mar 20 07:30:29 rpmi: libnuma-devel-2.0.11-alt1 1450022595 installed
<13>Mar 20 07:30:29 rpmi: libfftw3q-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Mar 20 07:30:29 rpmi: libICE-devel-1.0.9-alt1 1409902719 installed
<13>Mar 20 07:30:29 rpmi: libSM-devel-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed
<13>Mar 20 07:30:29 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed
<13>Mar 20 07:30:29 rpmi: xorg-printproto-devel-1.0.5-alt1 1303466042 installed
<13>Mar 20 07:30:29 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Mar 20 07:30:29 rpmi: libfftw3f-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Mar 20 07:30:29 rpmi: libfftw3l-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Mar 20 07:30:29 rpmi: pciids-20220307-alt1 p9+296499.100.1.1 1646982438 installed
<13>Mar 20 07:30:29 rpmi: tcsh-6.20.00-alt2 1503603377 installed
<13>Mar 20 07:30:29 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed
<13>Mar 20 07:30:29 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed
<13>Mar 20 07:30:29 rpmi: openmpi-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed
<13>Mar 20 07:30:30 rpmi: libpci-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed
<13>Mar 20 07:30:30 rpmi: pciutils-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed
<13>Mar 20 07:30:30 rpmi: libxblas-1.0.248-alt1.3 sisyphus+229150.100.1.1 1557388758 installed
<13>Mar 20 07:30:30 rpmi: liblapack-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed
<13>Mar 20 07:30:30 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902884 installed
<13>Mar 20 07:30:30 rpmi: libgsl-2.5-alt1 sisyphus.212796.100 1536590939 installed
<13>Mar 20 07:30:30 rpmi: libX11-locales-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Mar 20 07:30:30 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949347 installed
<13>Mar 20 07:30:30 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed
<13>Mar 20 07:30:30 rpmi: libX11-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Mar 20 07:30:30 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949422 installed
<13>Mar 20 07:30:30 rpmi: libXt-1.1.4-alt1 1369984716 installed
<13>Mar 20 07:30:30 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed
<13>Mar 20 07:30:30 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed
<13>Mar 20 07:30:30 rpmi: libXmu-1.1.3-alt1 sisyphus+225206.1200.1.2 1552949629 installed
<13>Mar 20 07:30:30 rpmi: libXp-1.0.2-alt1 1370421423 installed
<13>Mar 20 07:30:30 rpmi: libopenmotif4-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed
<13>Mar 20 07:30:31 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed
<13>Mar 20 07:30:31 rpmi: libX11-devel-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed
<13>Mar 20 07:30:31 rpmi: libXrender-devel-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed
<13>Mar 20 07:30:31 rpmi: libXt-devel-1.1.4-alt1 1369984716 installed
<13>Mar 20 07:30:31 rpmi: libatm-2.5.1-alt6 p9+263604.300.3.1 1608575724 installed
<13>Mar 20 07:30:31 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696275 installed
<13>Mar 20 07:30:31 rpmi: chrooted-0.3.11-alt1 p9+249340.100.2.1 1586263298 installed
<13>Mar 20 07:30:31 rpmi: chrooted-resolv-0.3.1-alt2 1176155257 installed
<13>Mar 20 07:30:32 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Mar 20 07:30:32 rpmi: libgfortran8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:32 rpmi: gcc8-fortran-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:32 rpmi: gcc-fortran-8-alt2 p9+246536.100.3.1 1582643803 installed
<13>Mar 20 07:30:32 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Mar 20 07:30:33 rpmi: libstdc++8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:33 rpmi: gcc8-c++-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed
<13>Mar 20 07:30:33 rpmi: gcc-c++-8-alt2 p9+246536.100.3.1 1582643803 installed
<13>Mar 20 07:30:33 rpmi: libgdbm-1.8.3-alt10 1454943313 installed
<13>Mar 20 07:30:33 rpmi: xml-utils-1:2.9.10-alt6 p9+266566.100.3.1 1614357016 installed
<13>Mar 20 07:30:33 rpmi: rpm-build-gir-0.7.3-alt2 p9+234356.40.2.1 1562933848 installed
<13>Mar 20 07:30:33 rpmi: libdevmapper-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed
<13>Mar 20 07:30:34 rpmi: udev-hwdb-1:247.11-alt1 p9+293887.400.6.1 1643984325 installed
<13>Mar 20 07:30:34 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237682 installed
<13>Mar 20 07:30:34 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed
<13>Mar 20 07:30:34 rpmi: libsystemd-1:247.11-alt1 p9+293887.400.6.1 1643984325 installed
<13>Mar 20 07:30:34 rpmi: hwclock-1:2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Mar 20 07:30:34 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed
<13>Mar 20 07:30:34 rpmi: losetup-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Mar 20 07:30:34 rpmi: lsblk-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed
<13>Mar 20 07:30:34 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed
<13>Mar 20 07:30:34 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed
<13>Mar 20 07:30:34 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Mar 20 07:30:34 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Mar 20 07:30:34 rpmi: ca-certificates-2021.10.06-alt1 p9+289862.100.1.1 1637033643 installed
<13>Mar 20 07:30:34 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed
<13>Mar 20 07:30:34 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed
<13>Mar 20 07:30:34 rpmi: libcrypto1.1-1.1.1l-alt1 p9+283690.100.2.1 1630572181 installed
<13>Mar 20 07:30:34 rpmi: libkmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed
<13>Mar 20 07:30:34 rpmi: startup-0.9.9.10-alt1 p9+263519.100.1.1 1608121516 installed
<13>Mar 20 07:30:34 rpmi: systemd-utils-1:247.11-alt1 p9+293887.400.6.1 1643984325 installed
<13>Mar 20 07:30:34 rpmi: kmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed
<13>Mar 20 07:30:34 rpmi: dmsetup-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed
<86>Mar 20 07:30:34 groupadd[3604069]: group added to /etc/group: name=tape, GID=499
<86>Mar 20 07:30:34 groupadd[3604069]: group added to /etc/gshadow: name=tape
<86>Mar 20 07:30:34 groupadd[3604069]: new group: name=tape, GID=499
<86>Mar 20 07:30:34 groupadd[3604076]: group added to /etc/group: name=dialout, GID=498
<86>Mar 20 07:30:34 groupadd[3604076]: group added to /etc/gshadow: name=dialout
<86>Mar 20 07:30:34 groupadd[3604076]: new group: name=dialout, GID=498
<86>Mar 20 07:30:34 groupadd[3604081]: group added to /etc/group: name=input, GID=497
<86>Mar 20 07:30:34 groupadd[3604081]: group added to /etc/gshadow: name=input
<86>Mar 20 07:30:34 groupadd[3604081]: new group: name=input, GID=497
<86>Mar 20 07:30:34 groupadd[3604086]: group added to /etc/group: name=video, GID=496
<86>Mar 20 07:30:34 groupadd[3604086]: group added to /etc/gshadow: name=video
<86>Mar 20 07:30:34 groupadd[3604086]: new group: name=video, GID=496
<86>Mar 20 07:30:34 groupadd[3604093]: group added to /etc/group: name=render, GID=495
<86>Mar 20 07:30:34 groupadd[3604093]: group added to /etc/gshadow: name=render
<86>Mar 20 07:30:34 groupadd[3604093]: new group: name=render, GID=495
<86>Mar 20 07:30:34 groupadd[3604099]: group added to /etc/group: name=vmusers, GID=494
<86>Mar 20 07:30:34 groupadd[3604099]: group added to /etc/gshadow: name=vmusers
<86>Mar 20 07:30:34 groupadd[3604099]: new group: name=vmusers, GID=494
<13>Mar 20 07:30:34 rpmi: udev-1:247.11-alt1 p9+293887.400.6.1 1643984325 installed
<13>Mar 20 07:30:34 rpmi: libssl1.1-1.1.1l-alt1 p9+283690.100.2.1 1630572181 installed
<13>Mar 20 07:30:34 rpmi: libpython3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed
<13>Mar 20 07:30:34 rpmi: python3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed
<13>Mar 20 07:30:35 rpmi: python3-base-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed
<13>Mar 20 07:30:35 rpmi: glib2-devel-2.60.7-alt1 p9+237353.100.2.2 1568372980 installed
<13>Mar 20 07:30:35 rpmi: libharfbuzz-devel-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed
<13>Mar 20 07:30:35 rpmi: libfreetype-devel-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed
<13>Mar 20 07:30:35 rpmi: fontconfig-devel-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed
<13>Mar 20 07:30:35 rpmi: libXft-devel-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed
<86>Mar 20 07:30:35 groupadd[3605871]: group added to /etc/group: name=iputils, GID=493
<86>Mar 20 07:30:35 groupadd[3605871]: group added to /etc/gshadow: name=iputils
<86>Mar 20 07:30:35 groupadd[3605871]: new group: name=iputils, GID=493
<86>Mar 20 07:30:35 useradd[3605881]: new user: name=iputils, UID=499, GID=493, home=/dev/null, shell=/dev/null
<86>Mar 20 07:30:35 groupadd[3605891]: group added to /etc/group: name=netadmin, GID=492
<86>Mar 20 07:30:35 groupadd[3605891]: group added to /etc/gshadow: name=netadmin
<86>Mar 20 07:30:35 groupadd[3605891]: new group: name=netadmin, GID=492
<13>Mar 20 07:30:35 rpmi: iputils-20190709-alt3 p9+281756.100.1.1 1628006690 installed
sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory
<13>Mar 20 07:30:35 rpmi: iproute2-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed
<13>Mar 20 07:30:35 rpmi: rdma-core-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:35 rpmi: ibacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:35 rpmi: rdma-core-devel-30.0-alt3 p9+255465.100.1.1 1595874072 installed
<13>Mar 20 07:30:35 rpmi: openmpi-devel-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed
<13>Mar 20 07:30:36 rpmi: libopenmotif-devel-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed
<13>Mar 20 07:30:36 rpmi: libgsl-devel-2.5-alt1 sisyphus.212796.100 1536590939 installed
<13>Mar 20 07:30:36 rpmi: liblapack-devel-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed
<13>Mar 20 07:30:36 rpmi: libfftw3-devel-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed
<13>Mar 20 07:30:36 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed
<13>Mar 20 07:30:36 rpmi: imake-1.0.7-alt3 1518797773 installed
<13>Mar 20 07:30:36 rpmi: chrpath-0.16-alt1 1453066315 installed
Building target platforms: x86_64
Building for target x86_64
Wrote: /usr/src/in/nosrpm/gromacs-4.0.7-alt8.nosrc.rpm (w1.gzdio)
<13>Mar 20 07:30:38 rpmi: libtool_1.5-3:1.5.26-alt12 1533413564 installed
Installing gromacs-4.0.7-alt8.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.42084
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf gromacs-4.0.7
+ echo 'Source #0 (gromacs-4.0.7.tar.gz):'
Source #0 (gromacs-4.0.7.tar.gz):
+ /bin/gzip -dc /usr/src/RPM/SOURCES/gromacs-4.0.7.tar.gz
+ /bin/tar -xf -
+ cd gromacs-4.0.7
+ /bin/chmod -c -Rf u+rwX,go-w .
+ echo 'Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):'
Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):
+ /usr/bin/patch -p0
patching file configure.ac
patching file src/tools/Makefile.am
+ sed -i 's|lib/openmpi|lib64/openmpi|' configure.ac
++ find ./ -name Makefile.am
+ sed -i 's|^\(AM_CPPFLAGS.*\)|\1 -g|' ./src/tools/Makefile.am ./src/ngmx/Makefile.am ./src/mdlib/Makefile.am ./src/kernel/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile.am ./src/gmxlib/nonbonded/nb_kernel/Makefile.am ./src/gmxlib/nonbonded/Makefile.am ./src/gmxlib/gmx_lapack/Makefile.am ./src/gmxlib/gmx_blas/Makefile.am ./src/gmxlib/Makefile.am ./src/contrib/Makefile.am ./src/Makefile.am ./share/tutor/water/Makefile.am ./share/tutor/speptide/Makefile.am ./share/tutor/nmr2/Makefile.am ./share/tutor/nmr1/Makefile.am ./share/tutor/mixed/Makefile.am ./share/tutor/methanol/Makefile.am ./share/tutor/gmxdemo/Makefile.am ./share/tutor/Makefile.am ./share/top/Makefile.am ./share/template/Makefile.am ./share/html/online/Makefile.am ./share/html/images/Makefile.am ./share/html/Makefile.am ./share/Makefile.am ./scripts/Makefile.am ./man/man1/Makefile.am ./man/Makefile.am ./include/types/Makefile.am ./include/Makefile.am ./admin/Makefile.am ./Makefile.am
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.42084
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
++ mpi-selector --list
++ grep openmpi
+ mpi-selector --set openmpi
+ source /etc/profile.d/mpi-selector.sh
++ mpi_selector_dir=/var/lib/mpi-selector/data
++ mpi_selector_homefile=/usr/src/.mpi-selector
++ mpi_selector_sysfile=/etc/sysconfig/mpi-selector
++ mpi_selection=
++ test -f /usr/src/.mpi-selector
+++ cat /usr/src/.mpi-selector
++ mpi_selection=openmpi
++ test openmpi '!=' '' -a -f /var/lib/mpi-selector/data/openmpi.sh
++ . /var/lib/mpi-selector/data/openmpi.sh
+++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+++ grep -q /usr/lib64/openmpi/bin
+++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+++ export PATH
+++ echo
+++ grep -q /usr/lib64/openmpi/lib
+++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++ export LD_LIBRARY_PATH
+++ echo
+++ grep -q /usr/lib64/openmpi/man
+++ MANPATH=/usr/lib64/openmpi/man:
+++ export MANPATH
+ export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib'
+ OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib'
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=|g' acinclude.m4
+ autoreconf -fisv
autoreconf-default: Entering directory `.'
autoreconf-default: configure.ac: not using Gettext
autoreconf-default: running: aclocal --force 
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: configure.ac: tracing
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: libtoolize --force
You should update your `aclocal.m4' by running aclocal.
Putting files in AC_CONFIG_AUX_DIR, `config'.
autoreconf-default: configure.ac: not using Intltool
autoreconf-default: configure.ac: not using gtk-doc
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: /usr/bin/autoconf-2.60 --force
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: /usr/bin/autoheader-2.60 --force
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
autoreconf-default: running: automake --add-missing --force-missing
configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from...
acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:419: the top level
configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:455: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from...
acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from...
acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from...
acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from...
acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from...
acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from...
acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from...
configure.ac:462: the top level
configure.ac:331: installing 'config/compile'
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
src/tools/Makefile.am:68: warning: 'LDFLAGS' is a user variable, you should not override it;
src/tools/Makefile.am:68: use 'AM_LDFLAGS' instead
autoreconf-default: Leaving directory `.'
+ mkdir single
+ pushd single
~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7
+ buildThis float disable
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FFLAGS
+ FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FCFLAGS
+ '[' -n '' ']'
++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2'
++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g'
+ ASFLAGS=
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix= --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... x86_64-alt-linux-gnu
checking host system type... x86_64-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '691' is supported by ustar format... yes
checking whether GID '691' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for x86_64-alt-linux-cc... no
checking for x86_64-alt-linux-icc... no
checking for x86_64-alt-linux-xlc... no
checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-alt-linux-gcc accepts -g... yes
checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed
checking whether x86_64-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-alt-linux-gcc... none
checking for x86_64-alt-linux-f77... no
checking for x86_64-alt-linux-ifort... no
checking for x86_64-alt-linux-xlf... no
checking for x86_64-alt-linux-xlf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fl32... no
checking for x86_64-alt-linux-g77... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-f90... no
checking for x86_64-alt-linux-xlf90... no
checking for x86_64-alt-linux-pgf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fort... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of x86_64-alt-linux-gcc... none
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... x86_64-alt-linux-gcc -E
checking whether x86_64-alt-linux-gcc accepts -O3... yes
checking whether x86_64-alt-linux-gcc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alt-linux-g++ accepts -g... yes
checking dependency style of x86_64-alt-linux-g++... none
checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok
checking for objdir... .libs
checking for x86_64-alt-linux-ar... no
checking for ar... ar
checking for x86_64-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for x86_64-alt-linux-strip... no
checking for strip... strip
checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC
checking if x86_64-alt-linux-gcc PIC flag -fPIC works... yes
checking if x86_64-alt-linux-gcc static flag -static works... no
checking if x86_64-alt-linux-gcc supports -c -o file.o... yes
checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC
checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes
checking if x86_64-alt-linux-g++ static flag -static works... no
checking if x86_64-alt-linux-g++ supports -c -o file.o... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 8
checking size of long long int... (cached) 8
checking size of off_t... (cached) 8
checking size of void*... 8
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports X86_64 SSE instructions... yes
checking whether byte ordering is bigendian... (cached) no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_x86_64_sse
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s
mkdir .libs
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse_test_asm.o
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/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse.o
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/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse.o
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c: In function 'nb_kernel_x86_64_sse_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:209:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:212:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_x86_64_sse_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
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make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_x86_64_sse.la  nb_kernel010_x86_64_sse.lo nb_kernel030_x86_64_sse.lo nb_kernel100_x86_64_sse.lo nb_kernel101_x86_64_sse.lo nb_kernel102_x86_64_sse.lo nb_kernel103_x86_64_sse.lo nb_kernel104_x86_64_sse.lo nb_kernel110_x86_64_sse.lo nb_kernel111_x86_64_sse.lo nb_kernel112_x86_64_sse.lo nb_kernel113_x86_64_sse.lo nb_kernel114_x86_64_sse.lo nb_kernel130_x86_64_sse.lo nb_kernel131_x86_64_sse.lo nb_kernel132_x86_64_sse.lo nb_kernel133_x86_64_sse.lo nb_kernel134_x86_64_sse.lo nb_kernel200_x86_64_sse.lo nb_kernel201_x86_64_sse.lo nb_kernel202_x86_64_sse.lo nb_kernel203_x86_64_sse.lo nb_kernel204_x86_64_sse.lo nb_kernel210_x86_64_sse.lo nb_kernel211_x86_64_sse.lo nb_kernel212_x86_64_sse.lo nb_kernel213_x86_64_sse.lo nb_kernel214_x86_64_sse.lo nb_kernel230_x86_64_sse.lo nb_kernel231_x86_64_sse.lo nb_kernel232_x86_64_sse.lo nb_kernel233_x86_64_sse.lo nb_kernel234_x86_64_sse.lo nb_kernel300_x86_64_sse.lo nb_kernel301_x86_64_sse.lo nb_kernel302_x86_64_sse.lo nb_kernel303_x86_64_sse.lo nb_kernel304_x86_64_sse.lo nb_kernel310_x86_64_sse.lo nb_kernel311_x86_64_sse.lo nb_kernel312_x86_64_sse.lo nb_kernel313_x86_64_sse.lo nb_kernel314_x86_64_sse.lo nb_kernel330_x86_64_sse.lo nb_kernel331_x86_64_sse.lo nb_kernel332_x86_64_sse.lo nb_kernel333_x86_64_sse.lo nb_kernel334_x86_64_sse.lo nb_kernel400_x86_64_sse.lo nb_kernel410_x86_64_sse.lo nb_kernel430_x86_64_sse.lo nb_kernel_x86_64_sse_test_asm.lo nb_kernel_x86_64_sse.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_x86_64_sse.a .libs/nb_kernel010_x86_64_sse.o .libs/nb_kernel030_x86_64_sse.o .libs/nb_kernel100_x86_64_sse.o .libs/nb_kernel101_x86_64_sse.o .libs/nb_kernel102_x86_64_sse.o .libs/nb_kernel103_x86_64_sse.o .libs/nb_kernel104_x86_64_sse.o .libs/nb_kernel110_x86_64_sse.o .libs/nb_kernel111_x86_64_sse.o .libs/nb_kernel112_x86_64_sse.o .libs/nb_kernel113_x86_64_sse.o .libs/nb_kernel114_x86_64_sse.o .libs/nb_kernel130_x86_64_sse.o .libs/nb_kernel131_x86_64_sse.o .libs/nb_kernel132_x86_64_sse.o .libs/nb_kernel133_x86_64_sse.o .libs/nb_kernel134_x86_64_sse.o .libs/nb_kernel200_x86_64_sse.o .libs/nb_kernel201_x86_64_sse.o .libs/nb_kernel202_x86_64_sse.o .libs/nb_kernel203_x86_64_sse.o .libs/nb_kernel204_x86_64_sse.o .libs/nb_kernel210_x86_64_sse.o .libs/nb_kernel211_x86_64_sse.o .libs/nb_kernel212_x86_64_sse.o .libs/nb_kernel213_x86_64_sse.o .libs/nb_kernel214_x86_64_sse.o .libs/nb_kernel230_x86_64_sse.o .libs/nb_kernel231_x86_64_sse.o .libs/nb_kernel232_x86_64_sse.o .libs/nb_kernel233_x86_64_sse.o .libs/nb_kernel234_x86_64_sse.o .libs/nb_kernel300_x86_64_sse.o .libs/nb_kernel301_x86_64_sse.o .libs/nb_kernel302_x86_64_sse.o .libs/nb_kernel303_x86_64_sse.o .libs/nb_kernel304_x86_64_sse.o .libs/nb_kernel310_x86_64_sse.o .libs/nb_kernel311_x86_64_sse.o .libs/nb_kernel312_x86_64_sse.o .libs/nb_kernel313_x86_64_sse.o .libs/nb_kernel314_x86_64_sse.o .libs/nb_kernel330_x86_64_sse.o .libs/nb_kernel331_x86_64_sse.o .libs/nb_kernel332_x86_64_sse.o .libs/nb_kernel333_x86_64_sse.o .libs/nb_kernel334_x86_64_sse.o .libs/nb_kernel400_x86_64_sse.o .libs/nb_kernel410_x86_64_sse.o .libs/nb_kernel430_x86_64_sse.o .libs/nb_kernel_x86_64_sse_test_asm.o .libs/nb_kernel_x86_64_sse.o
ranlib .libs/libnb_kernel_x86_64_sse.a
creating libnb_kernel_x86_64_sse.la
(cd .libs && rm -f libnb_kernel_x86_64_sse.la && ln -s ../libnb_kernel_x86_64_sse.la libnb_kernel_x86_64_sse.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb  -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating single precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:189:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:185:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:182:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:188:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:192:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:206:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:196:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:195:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:192:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:205:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:206:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:216:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:144:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:218:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:230:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:217:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:214:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:229:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:238:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:205:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:201:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:198:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:204:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:211:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:212:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:222:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:281:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:290:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:277:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:274:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:292:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:291:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:289:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:288:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:307:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:316:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:303:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:300:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:318:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:317:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:315:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:314:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:458:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:445:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:454:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:441:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:438:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:455:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:453:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:444:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:457:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:451:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:452:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:488:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:475:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:484:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:471:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:468:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:485:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:483:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:474:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:487:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:481:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:482:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:283:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:292:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:279:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:276:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:294:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:293:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:291:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:290:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:329:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:316:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:325:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:312:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:309:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:327:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:326:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:315:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:328:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:322:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:232:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:241:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:228:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:225:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:240:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:231:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:249:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:460:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:447:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:456:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:443:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:440:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:457:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:455:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:446:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:459:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:453:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:454:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:484:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:493:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:480:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:477:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:495:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:494:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:492:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:483:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:498:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:496:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:490:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:491:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:501:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:352:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:339:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:348:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:335:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:332:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:350:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:349:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:338:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:353:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:351:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:694:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:485:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:472:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:481:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:468:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:465:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:482:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:480:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:471:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:484:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:746:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:507:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:516:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:503:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:500:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:518:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:517:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:515:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:506:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:521:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:519:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:524:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:214:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:215:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:295:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:282:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:279:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:297:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:296:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:294:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:292:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:293:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:320:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:307:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:304:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:322:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:321:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:319:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:317:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:318:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:469:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:465:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:452:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:449:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:466:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:464:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:468:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:462:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:463:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:473:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:297:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:284:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:281:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:299:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:298:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:296:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:294:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:295:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:498:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:494:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:481:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:478:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:495:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:493:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:497:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:491:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:492:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:502:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:333:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:329:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:316:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:313:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:331:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:330:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:328:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:332:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:326:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:327:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:198:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:325:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:321:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:308:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:305:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:323:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:322:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:320:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:324:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:211:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:499:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:356:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:352:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:339:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:336:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:354:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:353:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:351:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:357:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:355:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:503:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:490:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:487:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:505:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:504:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:502:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:508:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:506:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:500:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:501:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:511:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:471:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:467:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:454:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:451:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:468:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:466:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:470:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:464:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:465:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:475:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:139:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:300:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:206:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:215:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:202:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:199:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:214:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:205:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:209:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:223:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:277:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:706:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:495:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:491:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:478:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:475:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:492:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:490:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:494:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:499:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:209:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:454:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:225:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:234:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:221:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:218:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:233:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:224:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:242:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:195:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:471:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:490:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:504:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:340:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:327:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:336:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:323:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:320:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:338:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:337:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:335:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:339:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:757:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:526:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:513:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:510:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:528:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:527:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:525:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:531:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:529:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:534:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:208:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:453:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:221:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:537:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:351:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:306:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:792:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:811:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:826:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:841:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:856:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:582:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:569:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:578:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:565:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:562:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:579:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:577:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:568:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:581:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:229:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:255:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:474:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:342:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:329:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:338:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:325:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:322:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:340:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:339:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:337:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:341:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:230:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:256:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:555:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:373:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:360:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:369:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:356:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:353:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:371:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:370:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:359:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:374:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:372:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:150:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:343:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:247:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:331:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:358:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:385:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:412:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:493:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:837:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:852:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:867:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:882:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:897:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:912:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:927:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:942:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:957:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:610:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:597:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:606:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:593:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:590:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:607:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:605:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:596:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:609:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:795:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:584:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:571:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:580:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:567:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:564:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:581:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:579:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:570:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:583:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:193:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:267:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:528:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:354:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:341:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:350:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:337:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:334:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:352:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:351:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:349:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:353:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:147:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:231:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:218:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:214:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:211:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:217:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:230:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:221:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:235:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:313:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:340:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:367:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:394:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:421:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:448:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:475:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:529:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:855:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:870:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:885:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:900:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:915:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:930:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:945:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:960:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:975:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:606:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:615:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:602:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:599:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:617:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:616:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:614:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:605:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:620:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:618:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:623:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:250:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:237:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:233:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:230:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:236:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:249:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:243:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:244:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:254:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:249:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:302:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:559:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:573:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:588:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:392:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:379:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:388:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:375:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:372:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:390:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:389:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:378:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:393:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:391:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:161:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:272:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:374:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:401:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:428:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:455:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:509:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:803:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:835:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:850:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:865:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:880:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:596:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:583:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:592:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:579:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:576:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:593:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:591:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:582:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:595:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:158:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:177:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:269:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:256:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:265:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:252:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:249:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:255:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:268:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:273:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:359:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:386:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:413:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:440:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:467:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:521:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:548:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:864:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1008:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:625:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:634:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:621:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:618:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:636:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:635:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:633:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:624:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:639:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:637:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:642:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo                   nb_kernel_x86_64_sse/libnb_kernel_x86_64_sse.la                    	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a
mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a
(cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.libs/libnb_kernel_x86_64_sse.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel430_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel410_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel400_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel334_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel333_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel332_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel331_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel330_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel314_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel313_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel312_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel311_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel310_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel304_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel303_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel302_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel301_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel300_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel234_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel233_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel232_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel231_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel230_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel214_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel213_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel212_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel211_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel210_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel204_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel203_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel202_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel201_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel200_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel134_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel133_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel132_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel131_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel130_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel114_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel113_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel112_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel111_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel110_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel104_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel103_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel102_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel101_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel100_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel030_x86_64_sse.o 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ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
mkdir .libs
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c  -fPIC -DPIC -o .libs/dnrm2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c  -fPIC -DPIC -o .libs/sasum.o
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c  -fPIC -DPIC -o .libs/scopy.o
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c  -fPIC -DPIC -o .libs/strmm.o
../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c  -fPIC -DPIC -o .libs/ssymv.o
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c  -fPIC -DPIC -o .libs/isamax.o
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c  -fPIC -DPIC -o .libs/strmv.o
../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
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Making all in gmx_lapack
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mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c  -fPIC -DPIC -o .libs/dgetf2.o
../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
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../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
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../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
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../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
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 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
In file included from ../../../src/gmxlib/maths.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_multisystem':
../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable]
   int *rank;
        ^~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable]
   char      **argv;
               ^~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized':
../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm':
../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                        ^~
../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                     ^~
../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                   ^
../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                 ^
../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                         ^~~~~~~
../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
               ^~~~~~~~~
../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
          ^~~~
../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
        ^
../../../src/gmxlib/network.c: In function 'gmx_finalize':
../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable]
   int ret;
       ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx.la -rpath /usr/lib64 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
x86_64-alt-linux-gcc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libgmx.so.5 -o .libs/libgmx.so.5.0.0
(cd .libs && rm -f libgmx.so.5 && ln -s libgmx.so.5.0.0 libgmx.so.5)
(cd .libs && rm -f libgmx.so && ln -s libgmx.so.5.0.0 libgmx.so)
creating libgmx.la
(cd .libs && rm -f libgmx.la && ln -s ../libgmx.la libgmx.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
../../../src/mdlib/fftgrid.c: In function 'mk_fftgrid':
../../../src/mdlib/fftgrid.c:97:25: warning: unused variable 'maxlocalsize' [-Wunused-variable]
     int           x1,y1,maxlocalsize;
                         ^~~~~~~~~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1549:20: warning: unused variable 'timesteps' [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
../../../src/mdlib/force.c:1548:32: warning: unused variable 't_wait' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1548:20: warning: unused variable 't_fnbf' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
At top level:
../../../src/mdlib/force.c:1548:20: warning: 't_fnbf' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1548:32: warning: 't_wait' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1549:20: warning: 'timesteps' defined but not used [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
In file included from ../../../src/mdlib/force.c:69:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_pp_init':
../../../src/mdlib/pme_pp.c:112:7: warning: unused variable 'rank' [-Wunused-variable]
   int rank;
       ^~~~
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_recv_q_x':
../../../src/mdlib/pme_pp.c:261:9: warning: unused variable 'charge_pp' [-Wunused-variable]
   real *charge_pp;
         ^~~~~~~~~
../../../src/mdlib/pme_pp.c:260:25: warning: unused variable 'sender' [-Wunused-variable]
   int  nat=0,q,messages,sender;
                         ^~~~~~
../../../src/mdlib/pme_pp.c:260:16: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int  nat=0,q,messages,sender;
                ^~~~~~~~
../../../src/mdlib/pme_pp.c:260:14: warning: unused variable 'q' [-Wunused-variable]
   int  nat=0,q,messages,sender;
              ^
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_send_force_vir_ener':
../../../src/mdlib/pme_pp.c:446:7: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int messages,ind_start,ind_end,receiver;
       ^~~~~~~~
At top level:
../../../src/mdlib/pme_pp.c:133:13: warning: 'gmx_pme_send_q_x_wait' defined but not used [-Wunused-function]
 static void gmx_pme_send_q_x_wait(gmx_domdec_t *dd)
             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c: In function 'convolution':
../../../src/mdlib/pppm.c:384:14: warning: unused variable 'jend' [-Wunused-variable]
   int jstart,jend;
              ^~~~
../../../src/mdlib/pppm.c:384:7: warning: unused variable 'jstart' [-Wunused-variable]
   int jstart,jend;
       ^~~~~~
At top level:
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'pmeredist':
../../../src/mdlib/pme.c:380:12: warning: unused variable 'ii' [-Wunused-variable]
     int i, ii;
            ^~
../../../src/mdlib/pme.c:380:9: warning: unused variable 'i' [-Wunused-variable]
     int i, ii;
         ^
../../../src/mdlib/pme.c:379:10: warning: variable 'idxa' set but not used [-Wunused-but-set-variable]
     int *idxa;
          ^~~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid_dd':
../../../src/mdlib/pme.c:660:18: warning: unused variable 'to' [-Wunused-variable]
     real *from, *to;
                  ^~
../../../src/mdlib/pme.c:660:11: warning: unused variable 'from' [-Wunused-variable]
     real *from, *to;
           ^~~~
../../../src/mdlib/pme.c:659:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:658:15: warning: unused variable 'localsize' [-Wunused-variable]
     int la12r,localsize;
               ^~~~~~~~~
../../../src/mdlib/pme.c:658:9: warning: unused variable 'la12r' [-Wunused-variable]
     int la12r,localsize;
         ^~~~~
../../../src/mdlib/pme.c:657:11: warning: unused variable 'i' [-Wunused-variable]
     int b,i;
           ^
../../../src/mdlib/pme.c:657:9: warning: unused variable 'b' [-Wunused-variable]
     int b,i;
         ^
../../../src/mdlib/pme.c:656:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid':
../../../src/mdlib/pme.c:756:16: warning: unused variable 'maxproc' [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:755:16: warning: unused variable 'localsize' [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:754:9: warning: unused variable 'i' [-Wunused-variable]
     int i;
         ^
../../../src/mdlib/pme.c:753:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: unused variable 'bFirst' [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c: In function 'spread_q_bsplines':
../../../src/mdlib/pme.c:840:20: warning: unused variable 'bndsize' [-Wunused-variable]
     int localsize, bndsize;
                    ^~~~~~~
../../../src/mdlib/pme.c:840:9: warning: unused variable 'localsize' [-Wunused-variable]
     int localsize, bndsize;
         ^~~~~~~~~
../../../src/mdlib/pme.c:835:16: warning: unused variable 'i' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
                ^
../../../src/mdlib/pme.c:835:14: warning: unused variable 'b' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
              ^
../../../src/mdlib/pme.c:834:20: warning: unused variable 'ol' [-Wunused-variable]
     pme_overlap_t *ol;
                    ^~
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:656:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: 'bFirst' defined but not used [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c:753:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:755:16: warning: 'localsize' defined but not used [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:756:16: warning: 'maxproc' defined but not used [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable]
   float  cycles_ppdpme,cycles_pme,cycles_force;
                        ^~~~~~~~~~
../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable]
   real   e,v,dvdl;
          ^
../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable]
   matrix boxs;
          ^~~~
../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable]
   bool   bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces;
                                                         ^~~
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode':
../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable]
     ivec coord,coord_pme;
                ^~~~~~~~~
../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable]
     ivec coord,coord_pme;
          ^~~~~
../../../src/mdlib/domdec.c: In function 'receive_vir_ener':
../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                              ^~~~
../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'make_pp_communicator':
../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable]
     int  i,rank,*buf;
                  ^~~
../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank,*buf;
            ^~~~
../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,rank,*buf;
          ^
../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid':
../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable]
     int  *buf;
           ^~~
../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'split_communicator':
../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank;
            ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
At top level:
../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function]
 static int *dd_pmenodes(t_commrec *cr)
             ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum':
../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                               ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                      ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
          ^~~
At top level:
../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable]
 static bool              wc_barrier=FALSE;
                          ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
x86_64-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0
(cd .libs && rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5)
(cd .libs && rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so)
creating libmd.la
(cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'gprod':
../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess.a
creating libgmxpreprocess.la
(cd .libs && rm -f libgmxpreprocess.la && ln -s ../libgmxpreprocess.la libgmxpreprocess.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+4)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
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/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx.la	../mdlib/libmd.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
x86_64-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx.so ../mdlib/.libs/libmd.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana.so.5 -o .libs/libgmxana.so.5.0.0
(cd .libs && rm -f libgmxana.so.5 && ln -s libgmxana.so.5.0.0 libgmxana.so.5)
(cd .libs && rm -f libgmxana.so && ln -s libgmxana.so.5.0.0 libgmxana.so)
creating libgmxana.la
(cd .libs && rm -f libgmxana.la && ln -s ../libgmxana.la libgmxana.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_genpr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_eneconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_editconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_genconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating do_dssp
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_ndx
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_wheel.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating wheel
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating mk_angndx
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjorder.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjorder
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjcat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjcat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating anadock
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genion
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_edi
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_bundle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bundle
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_chi
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_anaeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_analyze
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bond
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_cluster
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_angle
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_confrms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_confrms
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dih.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dih
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_covar
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_density.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_density
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_densmap.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_densmap
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_helixorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helixorient
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_current.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_current
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dielectric
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_principal.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_principal
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dist
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dipoles
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dyndom.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dyndom
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_disre.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_disre
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_enemat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_enemat
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_energy
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_lie.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_lie
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_filter.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_filter
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_gyrate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_h2order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_h2order
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helix
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_mindist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mindist
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_hbond
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_msd
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_morph.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_morph
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmeig
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_order
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmens
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_polystat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_polystat
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_rama.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rama
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_potential.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_potential
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rdf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rms
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsdist
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rotacf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sas
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_saltbr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_saltbr
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sgangle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sgangle
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sham
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sorient
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_spol.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spol
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sdf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_spatial.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spatial
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_traj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_traj
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_tcaf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_vanhove.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_vanhove
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_velacc
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_clustsize.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_clustsize
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_wham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_mdmat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mdmat
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating sigeps
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_kinetics.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_kinetics
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Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib64  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd -lgmx -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs,' | \
sed 's,@CC\@,x86_64-alt-linux-gcc,' | \
sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ mkdir double
+ pushd double
~/RPM/BUILD/gromacs-4.0.7/double ~/RPM/BUILD/gromacs-4.0.7
+ buildThis double disable _d
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FFLAGS
+ FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FCFLAGS
+ '[' -n '' ']'
++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2'
++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g'
+ ASFLAGS=
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-double --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix=_d --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... x86_64-alt-linux-gnu
checking host system type... x86_64-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '691' is supported by ustar format... yes
checking whether GID '691' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for x86_64-alt-linux-cc... no
checking for x86_64-alt-linux-icc... no
checking for x86_64-alt-linux-xlc... no
checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-alt-linux-gcc accepts -g... yes
checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed
checking whether x86_64-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-alt-linux-gcc... none
checking for x86_64-alt-linux-f77... no
checking for x86_64-alt-linux-ifort... no
checking for x86_64-alt-linux-xlf... no
checking for x86_64-alt-linux-xlf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fl32... no
checking for x86_64-alt-linux-g77... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-f90... no
checking for x86_64-alt-linux-xlf90... no
checking for x86_64-alt-linux-pgf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fort... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of x86_64-alt-linux-gcc... none
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... x86_64-alt-linux-gcc -E
checking whether x86_64-alt-linux-gcc accepts -O3... yes
checking whether x86_64-alt-linux-gcc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alt-linux-g++ accepts -g... yes
checking dependency style of x86_64-alt-linux-g++... none
checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok
checking for objdir... .libs
checking for x86_64-alt-linux-ar... no
checking for ar... ar
checking for x86_64-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for x86_64-alt-linux-strip... no
checking for strip... strip
checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC
checking if x86_64-alt-linux-gcc PIC flag -fPIC works... yes
checking if x86_64-alt-linux-gcc static flag -static works... no
checking if x86_64-alt-linux-gcc supports -c -o file.o... yes
checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC
checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes
checking if x86_64-alt-linux-g++ static flag -static works... no
checking if x86_64-alt-linux-g++ supports -c -o file.o... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 8
checking size of long long int... (cached) 8
checking size of off_t... (cached) 8
checking size of void*... 8
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports X86_64 SSE2... yes
checking whether byte ordering is bigendian... (cached) no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_x86_64_sse2
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s
mkdir .libs
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s
 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse2.o
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 x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2_test.o
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/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2.o
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c: In function 'nb_kernel_x86_64_sse2_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:206:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:209:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_x86_64_sse2_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_x86_64_sse2.la  nb_kernel010_x86_64_sse2.lo nb_kernel030_x86_64_sse2.lo nb_kernel100_x86_64_sse2.lo nb_kernel101_x86_64_sse2.lo nb_kernel102_x86_64_sse2.lo nb_kernel103_x86_64_sse2.lo nb_kernel104_x86_64_sse2.lo nb_kernel110_x86_64_sse2.lo nb_kernel111_x86_64_sse2.lo nb_kernel112_x86_64_sse2.lo nb_kernel113_x86_64_sse2.lo nb_kernel114_x86_64_sse2.lo nb_kernel130_x86_64_sse2.lo nb_kernel131_x86_64_sse2.lo nb_kernel132_x86_64_sse2.lo nb_kernel133_x86_64_sse2.lo nb_kernel134_x86_64_sse2.lo nb_kernel200_x86_64_sse2.lo nb_kernel201_x86_64_sse2.lo nb_kernel202_x86_64_sse2.lo nb_kernel203_x86_64_sse2.lo nb_kernel204_x86_64_sse2.lo nb_kernel210_x86_64_sse2.lo nb_kernel211_x86_64_sse2.lo nb_kernel212_x86_64_sse2.lo nb_kernel213_x86_64_sse2.lo nb_kernel214_x86_64_sse2.lo nb_kernel230_x86_64_sse2.lo nb_kernel231_x86_64_sse2.lo nb_kernel232_x86_64_sse2.lo nb_kernel233_x86_64_sse2.lo nb_kernel234_x86_64_sse2.lo nb_kernel300_x86_64_sse2.lo nb_kernel301_x86_64_sse2.lo nb_kernel302_x86_64_sse2.lo nb_kernel303_x86_64_sse2.lo nb_kernel304_x86_64_sse2.lo nb_kernel310_x86_64_sse2.lo nb_kernel311_x86_64_sse2.lo nb_kernel312_x86_64_sse2.lo nb_kernel313_x86_64_sse2.lo nb_kernel314_x86_64_sse2.lo nb_kernel330_x86_64_sse2.lo nb_kernel331_x86_64_sse2.lo nb_kernel332_x86_64_sse2.lo nb_kernel333_x86_64_sse2.lo nb_kernel334_x86_64_sse2.lo nb_kernel400_x86_64_sse2.lo nb_kernel410_x86_64_sse2.lo nb_kernel430_x86_64_sse2.lo nb_kernel_x86_64_sse2_test.lo nb_kernel_x86_64_sse2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_x86_64_sse2.a .libs/nb_kernel010_x86_64_sse2.o .libs/nb_kernel030_x86_64_sse2.o .libs/nb_kernel100_x86_64_sse2.o .libs/nb_kernel101_x86_64_sse2.o .libs/nb_kernel102_x86_64_sse2.o .libs/nb_kernel103_x86_64_sse2.o .libs/nb_kernel104_x86_64_sse2.o .libs/nb_kernel110_x86_64_sse2.o .libs/nb_kernel111_x86_64_sse2.o .libs/nb_kernel112_x86_64_sse2.o .libs/nb_kernel113_x86_64_sse2.o .libs/nb_kernel114_x86_64_sse2.o .libs/nb_kernel130_x86_64_sse2.o .libs/nb_kernel131_x86_64_sse2.o .libs/nb_kernel132_x86_64_sse2.o .libs/nb_kernel133_x86_64_sse2.o .libs/nb_kernel134_x86_64_sse2.o .libs/nb_kernel200_x86_64_sse2.o .libs/nb_kernel201_x86_64_sse2.o .libs/nb_kernel202_x86_64_sse2.o .libs/nb_kernel203_x86_64_sse2.o .libs/nb_kernel204_x86_64_sse2.o .libs/nb_kernel210_x86_64_sse2.o .libs/nb_kernel211_x86_64_sse2.o .libs/nb_kernel212_x86_64_sse2.o .libs/nb_kernel213_x86_64_sse2.o .libs/nb_kernel214_x86_64_sse2.o .libs/nb_kernel230_x86_64_sse2.o .libs/nb_kernel231_x86_64_sse2.o .libs/nb_kernel232_x86_64_sse2.o .libs/nb_kernel233_x86_64_sse2.o .libs/nb_kernel234_x86_64_sse2.o .libs/nb_kernel300_x86_64_sse2.o .libs/nb_kernel301_x86_64_sse2.o .libs/nb_kernel302_x86_64_sse2.o .libs/nb_kernel303_x86_64_sse2.o .libs/nb_kernel304_x86_64_sse2.o .libs/nb_kernel310_x86_64_sse2.o .libs/nb_kernel311_x86_64_sse2.o .libs/nb_kernel312_x86_64_sse2.o .libs/nb_kernel313_x86_64_sse2.o .libs/nb_kernel314_x86_64_sse2.o .libs/nb_kernel330_x86_64_sse2.o .libs/nb_kernel331_x86_64_sse2.o .libs/nb_kernel332_x86_64_sse2.o .libs/nb_kernel333_x86_64_sse2.o .libs/nb_kernel334_x86_64_sse2.o .libs/nb_kernel400_x86_64_sse2.o .libs/nb_kernel410_x86_64_sse2.o .libs/nb_kernel430_x86_64_sse2.o .libs/nb_kernel_x86_64_sse2_test.o .libs/nb_kernel_x86_64_sse2.o
ranlib .libs/libnb_kernel_x86_64_sse2.a
creating libnb_kernel_x86_64_sse2.la
(cd .libs && rm -f libnb_kernel_x86_64_sse2.la && ln -s ../libnb_kernel_x86_64_sse2.la libnb_kernel_x86_64_sse2.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb -double -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating double precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:287:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:214:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:201:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:194:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:215:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:202:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:218:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:125:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:272:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:190:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:132:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:146:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:310:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:236:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:223:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:216:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:237:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:224:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:240:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:153:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:162:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:171:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:374:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:383:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:392:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:153:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:162:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:171:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:374:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:383:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:392:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:193:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:202:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:211:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:220:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:247:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:592:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:601:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:610:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:619:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:628:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:637:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:646:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:655:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:664:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:297:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:299:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:222:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:209:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:205:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:202:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:208:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:223:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:226:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:399:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:408:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:417:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:300:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:296:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:283:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:297:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:286:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:301:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:299:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:304:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:193:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:202:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:211:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:220:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:229:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:238:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:247:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:256:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:265:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:592:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:601:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:610:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:619:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:628:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:637:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:646:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:655:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:664:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:192:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:435:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:444:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:453:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:326:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:322:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:309:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:323:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:312:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:327:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:325:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:330:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:202:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:211:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:220:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:229:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:238:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:247:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:256:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:265:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:274:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:616:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:625:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:634:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:643:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:652:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:661:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:670:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:679:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:688:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:476:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:463:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:472:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:474:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:473:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:471:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:477:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:475:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:469:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:470:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:480:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:219:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:228:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:237:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:246:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:255:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:264:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:273:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:282:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:291:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:660:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:669:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:678:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:687:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:696:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:705:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:714:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:723:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:732:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:506:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:493:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:502:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:504:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:503:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:501:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:507:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:505:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:499:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:500:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:510:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:401:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:410:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:419:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:302:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:298:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:285:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:299:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:288:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:303:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:301:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:306:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:325:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:234:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:233:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:173:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:182:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:191:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:200:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:445:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:454:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:463:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:472:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:337:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:320:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:317:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:335:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:334:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:332:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:338:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:336:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:331:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:341:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:619:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:628:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:637:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:646:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:655:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:664:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:673:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:682:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:691:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:478:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:465:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:474:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:476:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:475:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:473:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:479:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:477:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:471:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:472:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:482:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:427:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:436:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:445:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:463:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:219:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:228:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:237:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:246:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:255:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:264:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:273:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:282:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:291:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:300:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:671:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:698:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:725:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:734:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:743:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:752:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:517:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:504:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:513:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:500:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:515:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:514:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:512:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:503:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:518:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:516:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:510:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:511:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:521:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:469:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:478:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:487:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:496:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:510:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:126:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:275:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:206:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:189:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:186:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:207:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:210:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:154:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:163:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:172:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:379:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:388:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:397:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:644:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:653:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:662:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:671:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:698:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:730:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:503:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:490:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:499:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:501:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:500:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:498:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:504:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:502:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:507:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:694:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:703:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:712:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:721:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:730:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:739:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:748:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:757:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:766:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:775:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:786:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:540:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:527:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:536:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:523:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:538:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:537:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:535:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:526:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:541:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:539:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:544:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:301:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:154:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:163:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:172:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:379:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:388:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:397:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:405:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:414:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:423:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:305:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:301:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:288:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:285:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:302:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:306:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:304:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:309:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:194:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:203:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:212:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:221:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:230:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:239:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:248:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:257:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:266:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:603:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:612:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:621:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:630:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:639:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:648:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:657:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:666:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:675:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:194:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:203:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:212:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:221:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:230:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:239:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:248:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:257:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:266:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:603:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:612:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:621:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:630:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:639:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:648:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:657:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:666:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:675:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:303:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:225:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:208:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:205:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:226:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:229:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:193:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:440:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:449:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:458:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:330:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:326:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:313:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:310:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:327:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:331:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:329:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:334:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:628:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:637:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:646:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:655:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:664:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:673:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:682:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:691:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:700:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:487:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:483:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:485:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:484:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:482:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:488:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:486:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:480:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:481:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:491:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:407:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:416:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:425:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:307:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:303:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:290:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:287:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:304:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:308:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:306:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:311:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:220:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:229:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:238:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:247:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:256:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:265:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:274:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:283:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:292:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:671:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:680:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:689:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:698:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:707:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:716:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:725:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:734:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:743:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:516:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:512:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:514:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:513:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:511:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:517:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:515:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:509:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:510:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:520:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:174:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:183:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:192:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:201:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:477:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:341:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:324:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:321:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:339:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:338:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:336:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:342:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:340:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:335:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:345:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:157:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:328:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:346:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:249:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:232:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:229:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:250:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:253:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:204:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:213:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:222:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:231:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:240:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:249:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:258:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:267:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:276:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:631:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:640:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:649:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:658:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:667:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:676:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:685:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:694:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:703:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:489:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:485:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:487:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:486:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:484:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:490:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:488:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:482:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:483:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:493:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:204:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:432:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:441:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:450:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:469:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:331:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:327:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:314:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:311:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:328:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:332:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:330:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:335:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:219:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:474:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:483:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:492:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:501:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:141:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:292:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:207:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:212:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:213:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:220:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:247:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:274:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:283:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:292:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:301:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:682:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:709:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:736:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:745:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:754:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:763:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:527:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:523:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:510:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:525:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:524:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:522:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:528:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:526:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:520:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:521:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:531:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:157:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:166:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:175:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:215:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:420:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:429:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:438:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:157:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:166:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:175:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:214:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:420:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:429:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:438:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:465:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:655:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:664:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:673:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:682:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:709:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:742:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:513:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:509:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:511:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:510:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:508:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:514:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:512:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:517:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:154:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:320:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:336:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:223:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:232:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:241:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:250:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:259:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:268:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:277:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:286:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:295:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:304:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:315:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:705:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:714:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:723:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:732:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:741:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:750:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:759:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:768:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:777:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:786:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:797:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:550:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:546:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:533:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:548:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:547:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:545:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:551:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:549:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:554:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:197:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:206:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:215:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:224:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:251:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:716:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:725:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:734:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:743:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:752:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:761:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:770:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:788:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:201:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:233:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:259:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:448:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:457:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:466:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:483:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:516:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:346:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:333:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:342:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:329:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:343:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:332:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:347:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:345:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:350:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:322:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:339:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:242:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:229:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:225:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:222:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:228:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:243:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:246:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:197:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:206:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:215:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:224:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:233:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:242:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:251:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:260:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:269:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:716:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:725:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:734:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:743:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:752:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:761:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:770:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:788:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:179:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:188:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:197:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:280:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:482:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:491:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:500:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:370:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:357:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:366:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:353:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:367:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:356:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:371:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:369:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:374:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:261:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:506:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:348:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:335:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:344:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:331:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:345:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:334:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:349:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:347:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:352:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:238:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:264:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:291:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:492:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:501:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:510:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:519:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:542:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:556:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:571:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:381:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:364:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:361:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:379:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:378:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:376:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:367:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:382:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:380:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:385:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:292:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:351:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:378:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:405:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:432:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:459:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:513:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:743:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:752:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:761:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:770:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:779:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:788:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:797:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:806:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:815:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:828:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:847:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:862:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:877:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:892:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:907:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:922:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:937:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:952:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:600:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:587:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:596:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:598:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:597:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:595:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:601:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:599:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:604:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:224:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:233:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:242:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:251:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:260:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:269:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:278:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:287:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:296:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:322:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:376:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:403:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:430:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:484:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:511:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:538:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:785:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:794:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:803:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:812:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:821:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:830:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:839:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:848:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:857:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:873:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:628:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:615:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:624:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:626:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:625:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:623:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:629:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:627:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:632:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:332:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:199:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:273:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:460:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:469:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:478:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:208:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:217:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:226:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:235:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:244:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:253:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:262:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:271:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:280:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:326:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:380:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:407:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:434:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:461:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:488:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:746:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:755:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:764:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:773:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:782:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:791:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:800:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:809:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:818:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:831:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:851:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:866:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:881:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:896:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:911:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:926:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:941:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:956:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:602:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:589:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:598:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:600:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:599:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:597:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:603:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:601:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:606:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:149:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:306:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:321:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:233:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:229:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:216:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:213:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:219:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:234:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:226:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:237:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:224:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:251:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:278:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:287:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:296:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:305:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:796:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:805:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:814:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:823:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:832:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:841:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:850:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:859:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:868:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:877:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:955:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:970:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:985:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1000:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1015:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:639:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:626:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:635:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:622:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:637:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:636:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:634:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:625:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:640:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:638:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:643:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:257:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:310:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:509:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:518:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:527:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:536:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:550:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:575:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:589:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:604:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:400:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:383:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:380:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:398:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:397:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:395:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:386:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:401:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:399:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:404:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:163:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:336:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:356:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:247:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:392:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:419:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:446:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:473:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:500:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:527:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:755:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:764:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:773:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:782:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:791:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:800:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:809:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:818:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:827:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:931:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:946:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:961:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:976:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:614:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:601:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:610:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:612:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:611:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:609:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:615:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:613:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:618:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:141:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:179:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:351:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:369:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:383:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:271:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:258:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:267:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:254:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:251:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:257:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:272:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:275:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:162:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:334:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:406:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:433:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:460:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:487:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:541:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:568:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:812:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:821:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:830:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:839:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:848:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:857:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:866:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:875:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:884:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:893:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:904:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:928:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:943:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:958:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:973:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:988:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1003:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1018:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1033:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1048:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:658:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:645:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:654:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:641:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:656:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:655:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:653:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:644:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:659:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:657:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:662:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo                          nb_kernel_x86_64_sse2/libnb_kernel_x86_64_sse2.la             	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a
mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a
(cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/.libs/libnb_kernel_x86_64_sse2.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2_test.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel430_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel410_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel400_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel334_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel333_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel332_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel331_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel330_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel314_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel313_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel312_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel311_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel310_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel304_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel303_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel302_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel301_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel300_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel234_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel233_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel232_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel231_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel230_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel214_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel213_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel212_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel211_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel210_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel204_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel203_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel202_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel201_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel200_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel134_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel133_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel132_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel131_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel130_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel114_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel113_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel112_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel111_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel110_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel104_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel103_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel102_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel101_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel100_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel030_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel010_x86_64_sse2.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c  -fPIC -DPIC -o .libs/dger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c  -fPIC -DPIC -o .libs/dsyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
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../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
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../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
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     int i__, j, ix, jx, kx, info;
                             ^~~~
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ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
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../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
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../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
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     double sminlo, tolmul;
            ^~~~~~
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../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
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     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
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../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
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     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
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     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
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../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c  -fPIC -DPIC -o .libs/slansy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c  -fPIC -DPIC -o .libs/ssteqr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c  -fPIC -DPIC -o .libs/slarrfx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c  -fPIC -DPIC -o .libs/ilasrt2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c  -fPIC -DPIC -o .libs/slar1vx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c  -fPIC -DPIC -o .libs/slarrbx.o
../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c  -fPIC -DPIC -o .libs/slarrex.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_multisystem':
../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable]
   int *rank;
        ^~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable]
   char      **argv;
               ^~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
../../../src/gmxlib/maths.c: In function 'gmx_erfc':
../../../src/gmxlib/maths.c:291:31: warning: unused variable 'z4' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                               ^~
../../../src/gmxlib/maths.c:291:28: warning: unused variable 'z2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                            ^~
../../../src/gmxlib/maths.c:291:25: warning: unused variable 's3' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                         ^~
../../../src/gmxlib/maths.c:291:22: warning: unused variable 's2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                      ^~
../../../src/gmxlib/maths.c:291:19: warning: unused variable 's1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                   ^~
../../../src/gmxlib/maths.c:291:16: warning: unused variable 'r2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                ^~
../../../src/gmxlib/maths.c:291:13: warning: unused variable 'r1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
             ^~
../../../src/gmxlib/maths.c:337:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
             if(hx<0&&ix>=0x40180000)
             ^~
../../../src/gmxlib/maths.c:339:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
          R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
          ^
In file included from ../../../src/gmxlib/maths.c:43:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized':
../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm':
../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                        ^~
../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                     ^~
../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                   ^
../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                                 ^
../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
                         ^~~~~~~
../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
               ^~~~~~~~~
../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
          ^~~~
../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,rank,resultlen,hostnum,i,j,ng,ni;
        ^
../../../src/gmxlib/network.c: In function 'gmx_finalize':
../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable]
   int ret;
       ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx_d.la -rpath /usr/lib64 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
x86_64-alt-linux-gcc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libgmx_d.so.5 -o .libs/libgmx_d.so.5.0.0
(cd .libs && rm -f libgmx_d.so.5 && ln -s libgmx_d.so.5.0.0 libgmx_d.so.5)
(cd .libs && rm -f libgmx_d.so && ln -s libgmx_d.so.5.0.0 libgmx_d.so)
creating libgmx_d.la
(cd .libs && rm -f libgmx_d.la && ln -s ../libgmx_d.la libgmx_d.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
../../../src/mdlib/fftgrid.c: In function 'mk_fftgrid':
../../../src/mdlib/fftgrid.c:97:25: warning: unused variable 'maxlocalsize' [-Wunused-variable]
     int           x1,y1,maxlocalsize;
                         ^~~~~~~~~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1549:20: warning: unused variable 'timesteps' [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
../../../src/mdlib/force.c:1548:32: warning: unused variable 't_wait' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1548:20: warning: unused variable 't_fnbf' [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
At top level:
../../../src/mdlib/force.c:1548:20: warning: 't_fnbf' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                    ^~~~~~
../../../src/mdlib/force.c:1548:32: warning: 't_wait' defined but not used [-Wunused-variable]
     static double  t_fnbf=0.0, t_wait=0.0;
                                ^~~~~~
../../../src/mdlib/force.c:1549:20: warning: 'timesteps' defined but not used [-Wunused-variable]
     static int     timesteps=0;
                    ^~~~~~~~~
In file included from ../../../src/mdlib/force.c:69:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_pp_init':
../../../src/mdlib/pme_pp.c:112:7: warning: unused variable 'rank' [-Wunused-variable]
   int rank;
       ^~~~
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_recv_q_x':
../../../src/mdlib/pme_pp.c:261:9: warning: unused variable 'charge_pp' [-Wunused-variable]
   real *charge_pp;
         ^~~~~~~~~
../../../src/mdlib/pme_pp.c:260:25: warning: unused variable 'sender' [-Wunused-variable]
   int  nat=0,q,messages,sender;
                         ^~~~~~
../../../src/mdlib/pme_pp.c:260:16: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int  nat=0,q,messages,sender;
                ^~~~~~~~
../../../src/mdlib/pme_pp.c:260:14: warning: unused variable 'q' [-Wunused-variable]
   int  nat=0,q,messages,sender;
              ^
../../../src/mdlib/pme_pp.c: In function 'gmx_pme_send_force_vir_ener':
../../../src/mdlib/pme_pp.c:446:7: warning: variable 'messages' set but not used [-Wunused-but-set-variable]
   int messages,ind_start,ind_end,receiver;
       ^~~~~~~~
At top level:
../../../src/mdlib/pme_pp.c:133:13: warning: 'gmx_pme_send_q_x_wait' defined but not used [-Wunused-function]
 static void gmx_pme_send_q_x_wait(gmx_domdec_t *dd)
             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c: In function 'convolution':
../../../src/mdlib/pppm.c:384:14: warning: unused variable 'jend' [-Wunused-variable]
   int jstart,jend;
              ^~~~
../../../src/mdlib/pppm.c:384:7: warning: unused variable 'jstart' [-Wunused-variable]
   int jstart,jend;
       ^~~~~~
At top level:
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'pmeredist':
../../../src/mdlib/pme.c:380:12: warning: unused variable 'ii' [-Wunused-variable]
     int i, ii;
            ^~
../../../src/mdlib/pme.c:380:9: warning: unused variable 'i' [-Wunused-variable]
     int i, ii;
         ^
../../../src/mdlib/pme.c:379:10: warning: variable 'idxa' set but not used [-Wunused-but-set-variable]
     int *idxa;
          ^~~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid_dd':
../../../src/mdlib/pme.c:660:18: warning: unused variable 'to' [-Wunused-variable]
     real *from, *to;
                  ^~
../../../src/mdlib/pme.c:660:11: warning: unused variable 'from' [-Wunused-variable]
     real *from, *to;
           ^~~~
../../../src/mdlib/pme.c:659:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:658:15: warning: unused variable 'localsize' [-Wunused-variable]
     int la12r,localsize;
               ^~~~~~~~~
../../../src/mdlib/pme.c:658:9: warning: unused variable 'la12r' [-Wunused-variable]
     int la12r,localsize;
         ^~~~~
../../../src/mdlib/pme.c:657:11: warning: unused variable 'i' [-Wunused-variable]
     int b,i;
           ^
../../../src/mdlib/pme.c:657:9: warning: unused variable 'b' [-Wunused-variable]
     int b,i;
         ^
../../../src/mdlib/pme.c:656:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c: In function 'gmx_sum_qgrid':
../../../src/mdlib/pme.c:756:16: warning: unused variable 'maxproc' [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:755:16: warning: unused variable 'localsize' [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:754:9: warning: unused variable 'i' [-Wunused-variable]
     int i;
         ^
../../../src/mdlib/pme.c:753:18: warning: unused variable 'tmp' [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: unused variable 'bFirst' [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c: In function 'spread_q_bsplines':
../../../src/mdlib/pme.c:840:20: warning: unused variable 'bndsize' [-Wunused-variable]
     int localsize, bndsize;
                    ^~~~~~~
../../../src/mdlib/pme.c:840:9: warning: unused variable 'localsize' [-Wunused-variable]
     int localsize, bndsize;
         ^~~~~~~~~
../../../src/mdlib/pme.c:835:16: warning: unused variable 'i' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
                ^
../../../src/mdlib/pme.c:835:14: warning: unused variable 'b' [-Wunused-variable]
     int      b,i,nn,n,*i0,*j0,*k0,*ii0,*jj0,*kk0,ithx,ithy,ithz;
              ^
../../../src/mdlib/pme.c:834:20: warning: unused variable 'ol' [-Wunused-variable]
     pme_overlap_t *ol;
                    ^~
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:656:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp=NULL;
                  ^~~
../../../src/mdlib/pme.c:752:17: warning: 'bFirst' defined but not used [-Wunused-variable]
     static bool bFirst=TRUE;
                 ^~~~~~
../../../src/mdlib/pme.c:753:18: warning: 'tmp' defined but not used [-Wunused-variable]
     static real *tmp;
                  ^~~
../../../src/mdlib/pme.c:755:16: warning: 'localsize' defined but not used [-Wunused-variable]
     static int localsize;
                ^~~~~~~~~
../../../src/mdlib/pme.c:756:16: warning: 'maxproc' defined but not used [-Wunused-variable]
     static int maxproc;
                ^~~~~~~
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable]
   float  cycles_ppdpme,cycles_pme,cycles_force;
                        ^~~~~~~~~~
../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable]
   real   e,v,dvdl;
          ^
../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable]
   matrix boxs;
          ^~~~
../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable]
   bool   bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces;
                                                         ^~~
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode':
../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable]
     ivec coord,coord_pme;
                ^~~~~~~~~
../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable]
     ivec coord,coord_pme;
          ^~~~~
../../../src/mdlib/domdec.c: In function 'receive_vir_ener':
../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                              ^~~~
../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable]
     int  pmenode,coords[DIM],rank;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'make_pp_communicator':
../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable]
     int  i,rank,*buf;
                  ^~~
../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank,*buf;
            ^~~~
../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,rank,*buf;
          ^
../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid':
../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable]
     int  *buf;
           ^~~
../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
     gmx_domdec_comm_t *comm;
                        ^~~~
../../../src/mdlib/domdec.c: In function 'split_communicator':
../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable]
     ivec periods;
          ^~~~~~~
../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable]
     int  i,rank;
            ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
At top level:
../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function]
 static int *dd_pmenodes(t_commrec *cr)
             ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum':
../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                               ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
                      ^~~~~~~
../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable]
   double buf[ewcNR],*cyc_all,*buf_all;
          ^~~
At top level:
../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable]
 static bool              wc_barrier=FALSE;
                          ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
x86_64-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_d.so.5 -o .libs/libmd_d.so.5.0.0
(cd .libs && rm -f libmd_d.so.5 && ln -s libmd_d.so.5.0.0 libmd_d.so.5)
(cd .libs && rm -f libmd_d.so && ln -s libmd_d.so.5.0.0 libmd_d.so)
creating libmd_d.la
(cd .libs && rm -f libmd_d.la && ln -s ../libmd_d.la libmd_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'gprod':
../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess_d.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess_d.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess_d.a
creating libgmxpreprocess_d.la
(cd .libs && rm -f libgmxpreprocess_d.la && ln -s ../libgmxpreprocess_d.la libgmxpreprocess_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
mkdir .libs
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+16)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
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/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_d.la	../mdlib/libmd_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
x86_64-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx_d.so ../mdlib/.libs/libmd_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_d.so.5 -o .libs/libgmxana_d.so.5.0.0
(cd .libs && rm -f libgmxana_d.so.5 && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so.5)
(cd .libs && rm -f libgmxana_d.so && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so)
creating libgmxana_d.la
(cd .libs && rm -f libgmxana_d.la && ln -s ../libgmxana_d.la libgmxana_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_genconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_genpr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_eneconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_editconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating mk_angndx
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjcat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjcat
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjconv
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjorder.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjorder
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating xpm2ps
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_wheel.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating wheel
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genion
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating anadock
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_edi
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bond
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_anaeig
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_angle
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_chi
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_analyze
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_bundle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bundle
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_cluster
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_confrms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_confrms
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_covar
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_current.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_current
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dih.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dih
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_density.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_density
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_densmap.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_densmap
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_helixorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helixorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dielectric
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_principal.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_principal
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_disre.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_disre
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dipoles
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dist
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_enemat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_enemat
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dyndom.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dyndom
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_lie.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_lie
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_energy
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_filter.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_filter
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_h2order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_h2order
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_gyrate
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_mindist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mindist
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helix
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_hbond
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_msd
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_morph.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_morph
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmeig
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmens
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_polystat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_order
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_potential.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_potential
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_rama.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rama
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rdf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsdist
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rotacf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_saltbr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sas
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sgangle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sgangle
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sorient
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sham
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_spol.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spol
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_spatial.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spatial
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_traj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_traj
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_tcaf
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_clustsize.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_clustsize
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_velacc
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_vanhove.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_vanhove
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_mdmat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mdmat
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_wham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_wham
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating sigeps
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/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_kinetics.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_kinetics
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Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
mkdir: cannot create directory '.libs': File exists
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-alt-linux-gcc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib64  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd_d -lgmx_d -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs -DGMX_DOUBLE,' | \
sed 's,@CC\@,x86_64-alt-linux-gcc,' | \
sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu_double
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ mkdir mpi-single
+ pushd mpi-single
~/RPM/BUILD/gromacs-4.0.7/mpi-single ~/RPM/BUILD/gromacs-4.0.7
+ buildThis float enable _mpi
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FFLAGS
+ FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FCFLAGS
+ '[' -n '' ']'
++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2'
++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g'
+ ASFLAGS=
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --enable-mpi --program-suffix=_mpi --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... x86_64-alt-linux-gnu
checking host system type... x86_64-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '691' is supported by ustar format... yes
checking whether GID '691' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for x86_64-alt-linux-cc... no
checking for x86_64-alt-linux-icc... no
checking for x86_64-alt-linux-xlc... no
checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-alt-linux-gcc accepts -g... yes
checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed
checking whether x86_64-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-alt-linux-gcc... none
checking for x86_64-alt-linux-f77... no
checking for x86_64-alt-linux-ifort... no
checking for x86_64-alt-linux-xlf... no
checking for x86_64-alt-linux-xlf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fl32... no
checking for x86_64-alt-linux-g77... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-f90... no
checking for x86_64-alt-linux-xlf90... no
checking for x86_64-alt-linux-pgf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fort... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of x86_64-alt-linux-gcc... none
checking for mpxlc... no
checking for mpicc... mpicc
checking whether the MPI cc command works... yes
checking for catamount... no
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... mpicc -E
checking whether mpicc accepts -O3... yes
checking whether mpicc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alt-linux-g++ accepts -g... yes
checking dependency style of x86_64-alt-linux-g++... none
checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for objdir... .libs
checking for x86_64-alt-linux-ar... no
checking for ar... ar
checking for x86_64-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for x86_64-alt-linux-strip... no
checking for strip... strip
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC
checking if mpicc PIC flag -fPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC
checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes
checking if x86_64-alt-linux-g++ static flag -static works... no
checking if x86_64-alt-linux-g++ supports -c -o file.o... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 8
checking size of long long int... (cached) 8
checking size of off_t... (cached) 8
checking size of void*... 8
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports X86_64 SSE instructions... yes
checking whether byte ordering is bigendian... (cached) no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_x86_64_sse
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s
mkdir .libs
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s  -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse_test_asm.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse.o
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c: In function 'nb_kernel_x86_64_sse_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:209:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:212:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_x86_64_sse_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_x86_64_sse.la  nb_kernel010_x86_64_sse.lo nb_kernel030_x86_64_sse.lo nb_kernel100_x86_64_sse.lo nb_kernel101_x86_64_sse.lo nb_kernel102_x86_64_sse.lo nb_kernel103_x86_64_sse.lo nb_kernel104_x86_64_sse.lo nb_kernel110_x86_64_sse.lo nb_kernel111_x86_64_sse.lo nb_kernel112_x86_64_sse.lo nb_kernel113_x86_64_sse.lo nb_kernel114_x86_64_sse.lo nb_kernel130_x86_64_sse.lo nb_kernel131_x86_64_sse.lo nb_kernel132_x86_64_sse.lo nb_kernel133_x86_64_sse.lo nb_kernel134_x86_64_sse.lo nb_kernel200_x86_64_sse.lo nb_kernel201_x86_64_sse.lo nb_kernel202_x86_64_sse.lo nb_kernel203_x86_64_sse.lo nb_kernel204_x86_64_sse.lo nb_kernel210_x86_64_sse.lo nb_kernel211_x86_64_sse.lo nb_kernel212_x86_64_sse.lo nb_kernel213_x86_64_sse.lo nb_kernel214_x86_64_sse.lo nb_kernel230_x86_64_sse.lo nb_kernel231_x86_64_sse.lo nb_kernel232_x86_64_sse.lo nb_kernel233_x86_64_sse.lo nb_kernel234_x86_64_sse.lo nb_kernel300_x86_64_sse.lo nb_kernel301_x86_64_sse.lo nb_kernel302_x86_64_sse.lo nb_kernel303_x86_64_sse.lo nb_kernel304_x86_64_sse.lo nb_kernel310_x86_64_sse.lo nb_kernel311_x86_64_sse.lo nb_kernel312_x86_64_sse.lo nb_kernel313_x86_64_sse.lo nb_kernel314_x86_64_sse.lo nb_kernel330_x86_64_sse.lo nb_kernel331_x86_64_sse.lo nb_kernel332_x86_64_sse.lo nb_kernel333_x86_64_sse.lo nb_kernel334_x86_64_sse.lo nb_kernel400_x86_64_sse.lo nb_kernel410_x86_64_sse.lo nb_kernel430_x86_64_sse.lo nb_kernel_x86_64_sse_test_asm.lo nb_kernel_x86_64_sse.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_x86_64_sse.a .libs/nb_kernel010_x86_64_sse.o .libs/nb_kernel030_x86_64_sse.o .libs/nb_kernel100_x86_64_sse.o .libs/nb_kernel101_x86_64_sse.o .libs/nb_kernel102_x86_64_sse.o .libs/nb_kernel103_x86_64_sse.o .libs/nb_kernel104_x86_64_sse.o .libs/nb_kernel110_x86_64_sse.o .libs/nb_kernel111_x86_64_sse.o .libs/nb_kernel112_x86_64_sse.o .libs/nb_kernel113_x86_64_sse.o .libs/nb_kernel114_x86_64_sse.o .libs/nb_kernel130_x86_64_sse.o .libs/nb_kernel131_x86_64_sse.o .libs/nb_kernel132_x86_64_sse.o .libs/nb_kernel133_x86_64_sse.o .libs/nb_kernel134_x86_64_sse.o .libs/nb_kernel200_x86_64_sse.o .libs/nb_kernel201_x86_64_sse.o .libs/nb_kernel202_x86_64_sse.o .libs/nb_kernel203_x86_64_sse.o .libs/nb_kernel204_x86_64_sse.o .libs/nb_kernel210_x86_64_sse.o .libs/nb_kernel211_x86_64_sse.o .libs/nb_kernel212_x86_64_sse.o .libs/nb_kernel213_x86_64_sse.o .libs/nb_kernel214_x86_64_sse.o .libs/nb_kernel230_x86_64_sse.o .libs/nb_kernel231_x86_64_sse.o .libs/nb_kernel232_x86_64_sse.o .libs/nb_kernel233_x86_64_sse.o .libs/nb_kernel234_x86_64_sse.o .libs/nb_kernel300_x86_64_sse.o .libs/nb_kernel301_x86_64_sse.o .libs/nb_kernel302_x86_64_sse.o .libs/nb_kernel303_x86_64_sse.o .libs/nb_kernel304_x86_64_sse.o .libs/nb_kernel310_x86_64_sse.o .libs/nb_kernel311_x86_64_sse.o .libs/nb_kernel312_x86_64_sse.o .libs/nb_kernel313_x86_64_sse.o .libs/nb_kernel314_x86_64_sse.o .libs/nb_kernel330_x86_64_sse.o .libs/nb_kernel331_x86_64_sse.o .libs/nb_kernel332_x86_64_sse.o .libs/nb_kernel333_x86_64_sse.o .libs/nb_kernel334_x86_64_sse.o .libs/nb_kernel400_x86_64_sse.o .libs/nb_kernel410_x86_64_sse.o .libs/nb_kernel430_x86_64_sse.o .libs/nb_kernel_x86_64_sse_test_asm.o .libs/nb_kernel_x86_64_sse.o
ranlib .libs/libnb_kernel_x86_64_sse.a
creating libnb_kernel_x86_64_sse.la
(cd .libs && rm -f libnb_kernel_x86_64_sse.la && ln -s ../libnb_kernel_x86_64_sse.la libnb_kernel_x86_64_sse.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb  -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating single precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:189:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:185:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:182:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:188:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:192:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:206:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:196:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:195:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:192:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:205:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:206:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:216:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:144:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:218:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:230:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:217:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:214:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:229:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:238:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:265:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:261:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:258:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:268:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:269:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:272:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:205:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:201:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:198:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:204:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:211:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:212:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:222:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:281:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:290:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:277:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:274:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:292:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:291:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:289:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:288:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:444:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:431:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:440:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:427:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:424:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:441:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:439:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:430:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:443:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:434:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:437:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:433:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:435:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:438:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:436:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:458:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:445:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:454:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:441:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:438:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:455:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:453:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:444:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:457:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:451:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:452:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:307:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:316:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:303:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:300:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:318:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:317:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:315:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:314:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:488:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:475:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:484:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:471:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:468:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:485:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:483:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:474:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:487:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:481:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:482:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:283:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:292:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:279:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:276:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:294:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:293:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:291:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:290:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:232:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:241:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:228:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:225:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:240:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:231:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:249:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:329:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:316:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:325:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:312:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:309:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:327:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:326:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:315:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:328:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:322:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:460:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:447:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:456:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:443:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:440:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:457:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:455:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:446:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:459:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:453:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:454:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:484:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:493:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:480:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:477:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:495:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:494:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:492:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:483:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:498:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:496:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:490:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:491:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:501:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:352:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:339:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:348:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:335:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:332:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:350:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:349:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:338:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:353:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:351:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:694:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:485:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:472:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:481:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:468:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:465:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:482:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:480:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:471:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:484:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:746:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:507:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:516:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:503:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:500:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:518:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:517:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:515:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:506:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:521:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:519:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:524:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:265:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:262:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:272:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:275:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:273:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:276:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:274:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:214:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:215:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:295:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:282:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:279:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:297:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:296:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:294:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:292:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:293:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:454:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:450:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:437:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:434:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:451:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:449:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:453:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:444:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:447:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:443:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:445:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:448:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:446:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:458:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:320:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:307:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:304:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:322:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:321:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:319:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:317:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:318:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:469:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:465:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:452:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:449:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:466:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:464:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:468:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:462:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:463:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:473:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:297:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:284:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:281:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:299:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:298:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:296:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:294:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:295:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:498:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:494:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:481:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:478:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:495:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:493:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:497:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:491:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:492:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:502:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:471:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:467:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:454:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:451:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:468:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:466:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:470:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:464:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:465:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:475:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:333:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:329:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:316:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:313:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:331:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:330:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:328:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:332:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:326:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:327:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:198:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:325:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:321:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:308:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:305:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:323:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:322:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:320:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:324:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:503:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:490:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:487:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:505:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:504:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:502:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:508:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:506:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:500:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:501:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:511:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:211:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:499:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:356:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:352:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:339:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:336:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:354:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:353:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:351:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:357:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:355:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:139:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:300:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:206:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:215:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:202:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:199:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:214:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:205:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:209:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:223:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:209:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:454:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:182:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:208:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:453:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:321:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:308:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:304:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:301:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:320:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:311:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:312:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:277:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:706:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:495:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:491:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:478:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:475:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:492:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:490:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:494:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:499:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:757:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:526:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:513:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:510:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:528:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:527:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:525:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:531:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:529:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:534:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:225:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:234:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:221:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:218:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:233:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:224:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:242:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:195:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:471:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:490:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:504:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:340:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:327:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:336:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:323:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:320:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:338:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:337:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:335:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:339:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:263:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:344:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:371:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:398:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:425:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:452:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:479:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:764:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:794:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:809:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:824:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:854:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:869:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:884:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:565:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:552:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:561:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:548:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:545:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:562:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:560:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:551:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:564:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:555:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:554:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:556:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:557:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:153:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:221:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:537:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:351:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:196:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:229:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:255:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:474:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:508:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:342:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:329:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:338:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:325:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:322:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:340:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:339:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:337:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:341:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:274:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:306:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:792:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:811:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:826:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:841:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:856:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:582:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:569:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:578:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:565:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:562:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:579:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:577:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:568:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:581:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:230:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:256:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:555:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:373:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:360:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:369:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:356:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:353:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:371:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:370:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:359:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:374:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:372:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:150:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:343:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:247:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:331:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:358:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:385:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:412:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:439:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:493:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:837:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:852:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:867:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:882:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:897:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:912:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:927:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:942:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:957:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:610:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:597:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:606:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:593:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:590:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:607:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:605:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:596:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:609:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:193:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:267:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:528:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:354:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:341:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:350:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:337:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:334:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:352:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:351:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:349:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:353:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:795:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:584:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:571:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:580:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:567:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:564:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:581:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:579:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:570:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:583:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:147:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:317:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:231:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:218:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:214:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:211:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:217:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:230:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:221:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:235:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:210:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:249:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:275:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:302:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:559:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:573:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:588:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:392:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:379:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:388:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:375:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:372:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:390:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:389:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:378:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:393:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:391:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:313:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:340:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:367:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:394:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:421:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:448:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:475:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:529:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:855:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:870:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:885:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:900:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:915:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:930:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:945:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:960:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:975:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:606:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:615:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:602:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:599:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:617:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:616:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:614:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:605:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:620:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:618:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:623:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:161:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:250:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:237:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:233:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:230:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:236:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:249:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:243:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:244:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:254:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:272:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:320:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:374:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:401:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:428:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:455:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:482:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:509:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:803:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:835:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:850:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:865:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:880:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:596:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:583:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:592:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:579:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:576:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:593:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:591:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:582:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:595:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:158:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:177:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:269:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:256:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:265:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:252:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:249:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:255:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:268:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:273:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:294:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:332:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:359:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:386:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:413:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:440:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:467:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:521:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:548:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:864:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1008:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:625:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:634:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:621:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:618:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:636:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:635:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:633:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:624:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:639:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:637:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:642:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo                   nb_kernel_x86_64_sse/libnb_kernel_x86_64_sse.la                    	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a
mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a
(cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.libs/libnb_kernel_x86_64_sse.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel430_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel410_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel400_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel334_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel333_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel332_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel331_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel330_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel314_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel313_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel312_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel311_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel310_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel304_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel303_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel302_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel301_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel300_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel234_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel233_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel232_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel231_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel230_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel214_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel213_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel212_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel211_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel210_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel204_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel203_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel202_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel201_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel200_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel134_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel133_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel132_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel131_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel130_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel114_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel113_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel112_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel111_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel110_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel104_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel103_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel102_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel101_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel100_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel030_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel010_x86_64_sse.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c  -fPIC -DPIC -o .libs/dger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c  -fPIC -DPIC -o .libs/dsyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c  -fPIC -DPIC -o .libs/daxpy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c  -fPIC -DPIC -o .libs/ddot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c  -fPIC -DPIC -o .libs/dscal.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c  -fPIC -DPIC -o .libs/dnrm2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c  -fPIC -DPIC -o .libs/dgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c  -fPIC -DPIC -o .libs/dtrsm.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c  -fPIC -DPIC -o .libs/idamax.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c  -fPIC -DPIC -o .libs/scopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c  -fPIC -DPIC -o .libs/sasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c  -fPIC -DPIC -o .libs/srot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c  -fPIC -DPIC -o .libs/sger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c  -fPIC -DPIC -o .libs/sswap.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c  -fPIC -DPIC -o .libs/saxpy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c  -fPIC -DPIC -o .libs/ssyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c  -fPIC -DPIC -o .libs/snrm2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c  -fPIC -DPIC -o .libs/sdot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c  -fPIC -DPIC -o .libs/sscal.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c  -fPIC -DPIC -o .libs/strmm.o
../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c  -fPIC -DPIC -o .libs/sgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c  -fPIC -DPIC -o .libs/strsm.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c  -fPIC -DPIC -o .libs/isamax.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c  -fPIC -DPIC -o .libs/ssymv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c  -fPIC -DPIC -o .libs/strmv.o
../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libblas.la  dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
Making all in gmx_lapack
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c  -fPIC -DPIC -o .libs/dlamrg.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c  -fPIC -DPIC -o .libs/dgetf2.o
../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c  -fPIC -DPIC -o .libs/dorgl2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c  -fPIC -DPIC -o .libs/dlarnv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c  -fPIC -DPIC -o .libs/dlasq6.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c  -fPIC -DPIC -o .libs/dlasd0.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c  -fPIC -DPIC -o .libs/dbdsdc.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c  -fPIC -DPIC -o .libs/dlasda.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c  -fPIC -DPIC -o .libs/dormqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c  -fPIC -DPIC -o .libs/dlange.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c  -fPIC -DPIC -o .libs/dgetrf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c  -fPIC -DPIC -o .libs/dlasd1.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c  -fPIC -DPIC -o .libs/dtrtri.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c  -fPIC -DPIC -o .libs/dlasdq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c  -fPIC -DPIC -o .libs/dormtr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c  -fPIC -DPIC -o .libs/dorglq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c  -fPIC -DPIC -o .libs/dgebd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c  -fPIC -DPIC -o .libs/dlasr.o
../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c  -fPIC -DPIC -o .libs/dlanst.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c  -fPIC -DPIC -o .libs/dbdsqr.o
../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlabrd.lo ../../../../src/gmxlib/gmx_lapack/dlabrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlabrd.c  -fPIC -DPIC -o .libs/dlabrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c  -fPIC -DPIC -o .libs/dlasdt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c  -fPIC -DPIC -o .libs/dlasrt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c  -fPIC -DPIC -o .libs/dorgqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c  -fPIC -DPIC -o .libs/dgebrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd2.c  -fPIC -DPIC -o .libs/dlasd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlacpy.c  -fPIC -DPIC -o .libs/dlacpy.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytrd.c  -fPIC -DPIC -o .libs/dsytrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlapy2.c  -fPIC -DPIC -o .libs/dlapy2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2l.c  -fPIC -DPIC -o .libs/dorm2l.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrti2.c  -fPIC -DPIC -o .libs/dtrti2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq1.c  -fPIC -DPIC -o .libs/dlasq1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetri.c  -fPIC -DPIC -o .libs/dgetri.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorm2r.lo ../../../../src/gmxlib/gmx_lapack/dorm2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2r.c  -fPIC -DPIC -o .libs/dorm2r.o
../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasv2.c  -fPIC -DPIC -o .libs/dlasv2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelqf.c  -fPIC -DPIC -o .libs/dgelqf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarf.c  -fPIC -DPIC -o .libs/dlarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstein.c  -fPIC -DPIC -o .libs/dstein.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlartg.c  -fPIC -DPIC -o .libs/dlartg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd5.c  -fPIC -DPIC -o .libs/dlasd5.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaebz.c  -fPIC -DPIC -o .libs/dlaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaswp.c  -fPIC -DPIC -o .libs/dlaswp.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd4.c  -fPIC -DPIC -o .libs/dlasd4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormbr.c  -fPIC -DPIC -o .libs/dormbr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqr2.c  -fPIC -DPIC -o .libs/dgeqr2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq2.c  -fPIC -DPIC -o .libs/dlasq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsterf.c  -fPIC -DPIC -o .libs/dsterf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaed6.c  -fPIC -DPIC -o .libs/dlaed6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaruv.c  -fPIC -DPIC -o .libs/dlaruv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd6.c  -fPIC -DPIC -o .libs/dlasd6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq3.c  -fPIC -DPIC -o .libs/dlasq3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorml2.c  -fPIC -DPIC -o .libs/dorml2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstevr.c  -fPIC -DPIC -o .libs/dstevr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlatrd.c  -fPIC -DPIC -o .libs/dlatrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c  -fPIC -DPIC -o .libs/dgeqrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c  -fPIC -DPIC -o .libs/dlarfb.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfg.c  -fPIC -DPIC -o .libs/dlarfg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagtf.c  -fPIC -DPIC -o .libs/dlagtf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c  -fPIC -DPIC -o .libs/dlas2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c  -fPIC -DPIC -o .libs/dorg2r.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c  -fPIC -DPIC -o .libs/dormlq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c  -fPIC -DPIC -o .libs/dsytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c  -fPIC -DPIC -o .libs/dlasd7.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c  -fPIC -DPIC -o .libs/dlasq4.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c  -fPIC -DPIC -o .libs/dlagts.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c  -fPIC -DPIC -o .libs/dgesdd.o
../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c  -fPIC -DPIC -o .libs/dlarft.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c  -fPIC -DPIC -o .libs/dlasd8.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c  -fPIC -DPIC -o .libs/dlascl.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c  -fPIC -DPIC -o .libs/dorgbr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c  -fPIC -DPIC -o .libs/dormql.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c  -fPIC -DPIC -o .libs/dlasq5.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c  -fPIC -DPIC -o .libs/dlaev2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c  -fPIC -DPIC -o .libs/dlasrt2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c  -fPIC -DPIC -o .libs/dsyevr.o
../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c  -fPIC -DPIC -o .libs/dlansy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c  -fPIC -DPIC -o .libs/dsteqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c  -fPIC -DPIC -o .libs/dlarrbx.o
../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c  -fPIC -DPIC -o .libs/dlar1vx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c  -fPIC -DPIC -o .libs/dlarrfx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c  -fPIC -DPIC -o .libs/sgetf2.o
../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c  -fPIC -DPIC -o .libs/slamrg.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrex.lo ../../../../src/gmxlib/gmx_lapack/dlarrex.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c  -fPIC -DPIC -o .libs/dlarrex.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarnv.lo ../../../../src/gmxlib/gmx_lapack/slarnv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c  -fPIC -DPIC -o .libs/slarnv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c  -fPIC -DPIC -o .libs/sbdsdc.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c  -fPIC -DPIC -o .libs/slasd0.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrvx.lo ../../../../src/gmxlib/gmx_lapack/dlarrvx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c  -fPIC -DPIC -o .libs/dlarrvx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasda.lo ../../../../src/gmxlib/gmx_lapack/slasda.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c  -fPIC -DPIC -o .libs/slasda.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq6.lo ../../../../src/gmxlib/gmx_lapack/slasq6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c  -fPIC -DPIC -o .libs/slasq6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c  -fPIC -DPIC -o .libs/sormqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgl2.lo ../../../../src/gmxlib/gmx_lapack/sorgl2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c  -fPIC -DPIC -o .libs/sorgl2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrf.lo ../../../../src/gmxlib/gmx_lapack/sgetrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c  -fPIC -DPIC -o .libs/sgetrf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slange.lo ../../../../src/gmxlib/gmx_lapack/slange.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c  -fPIC -DPIC -o .libs/slange.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd1.lo ../../../../src/gmxlib/gmx_lapack/slasd1.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c  -fPIC -DPIC -o .libs/slasd1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c  -fPIC -DPIC -o .libs/ssytrd.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorglq.lo ../../../../src/gmxlib/gmx_lapack/sorglq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c  -fPIC -DPIC -o .libs/sorglq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormtr.lo ../../../../src/gmxlib/gmx_lapack/sormtr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c  -fPIC -DPIC -o .libs/sormtr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdq.lo ../../../../src/gmxlib/gmx_lapack/slasdq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c  -fPIC -DPIC -o .libs/slasdq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasr.lo ../../../../src/gmxlib/gmx_lapack/slasr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c  -fPIC -DPIC -o .libs/slasr.o
../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebd2.lo ../../../../src/gmxlib/gmx_lapack/sgebd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c  -fPIC -DPIC -o .libs/sgebd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c  -fPIC -DPIC -o .libs/sbdsqr.o
../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdt.lo ../../../../src/gmxlib/gmx_lapack/slasdt.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c  -fPIC -DPIC -o .libs/slasdt.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slanst.lo ../../../../src/gmxlib/gmx_lapack/slanst.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c  -fPIC -DPIC -o .libs/slanst.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slabrd.lo ../../../../src/gmxlib/gmx_lapack/slabrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c  -fPIC -DPIC -o .libs/slabrd.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgqr.lo ../../../../src/gmxlib/gmx_lapack/sorgqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c  -fPIC -DPIC -o .libs/sorgqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt.lo ../../../../src/gmxlib/gmx_lapack/slasrt.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c  -fPIC -DPIC -o .libs/slasrt.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd2.lo ../../../../src/gmxlib/gmx_lapack/slasd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c  -fPIC -DPIC -o .libs/slasd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebrd.lo ../../../../src/gmxlib/gmx_lapack/sgebrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c  -fPIC -DPIC -o .libs/sgebrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c  -fPIC -DPIC -o .libs/sgetrs.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slacpy.c  -fPIC -DPIC -o .libs/slacpy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slapy2.lo ../../../../src/gmxlib/gmx_lapack/slapy2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c  -fPIC -DPIC -o .libs/slapy2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaset.lo ../../../../src/gmxlib/gmx_lapack/slaset.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c  -fPIC -DPIC -o .libs/slaset.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slassq.c  -fPIC -DPIC -o .libs/slassq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstebz.c  -fPIC -DPIC -o .libs/sstebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2l.c  -fPIC -DPIC -o .libs/sorm2l.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetri.c  -fPIC -DPIC -o .libs/sgetri.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd3.c  -fPIC -DPIC -o .libs/slasd3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstegr.c  -fPIC -DPIC -o .libs/sstegr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelq2.c  -fPIC -DPIC -o .libs/sgelq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slae2.c  -fPIC -DPIC -o .libs/slae2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strti2.c  -fPIC -DPIC -o .libs/strti2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq1.lo ../../../../src/gmxlib/gmx_lapack/slasq1.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq1.c  -fPIC -DPIC -o .libs/slasq1.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strtri.lo ../../../../src/gmxlib/gmx_lapack/strtri.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strtri.c  -fPIC -DPIC -o .libs/strtri.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2r.lo ../../../../src/gmxlib/gmx_lapack/sorm2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c  -fPIC -DPIC -o .libs/sorm2r.o
../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasv2.c  -fPIC -DPIC -o .libs/slasv2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelqf.c  -fPIC -DPIC -o .libs/sgelqf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstein.c  -fPIC -DPIC -o .libs/sstein.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarf.c  -fPIC -DPIC -o .libs/slarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slartg.c  -fPIC -DPIC -o .libs/slartg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaebz.c  -fPIC -DPIC -o .libs/slaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd5.c  -fPIC -DPIC -o .libs/slasd5.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaswp.lo ../../../../src/gmxlib/gmx_lapack/slaswp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaswp.c  -fPIC -DPIC -o .libs/slaswp.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormbr.lo ../../../../src/gmxlib/gmx_lapack/sormbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormbr.c  -fPIC -DPIC -o .libs/sormbr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd4.lo ../../../../src/gmxlib/gmx_lapack/slasd4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd4.c  -fPIC -DPIC -o .libs/slasd4.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgeqr2.lo ../../../../src/gmxlib/gmx_lapack/sgeqr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqr2.c  -fPIC -DPIC -o .libs/sgeqr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq2.lo ../../../../src/gmxlib/gmx_lapack/slasq2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq2.c  -fPIC -DPIC -o .libs/slasq2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssterf.lo ../../../../src/gmxlib/gmx_lapack/ssterf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c  -fPIC -DPIC -o .libs/ssterf.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaruv.lo ../../../../src/gmxlib/gmx_lapack/slaruv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaruv.c  -fPIC -DPIC -o .libs/slaruv.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd6.lo ../../../../src/gmxlib/gmx_lapack/slasd6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c  -fPIC -DPIC -o .libs/slasd6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaed6.lo ../../../../src/gmxlib/gmx_lapack/slaed6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaed6.c  -fPIC -DPIC -o .libs/slaed6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq3.lo ../../../../src/gmxlib/gmx_lapack/slasq3.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq3.c  -fPIC -DPIC -o .libs/slasq3.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstevr.lo ../../../../src/gmxlib/gmx_lapack/sstevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c  -fPIC -DPIC -o .libs/sstevr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slatrd.lo ../../../../src/gmxlib/gmx_lapack/slatrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slatrd.c  -fPIC -DPIC -o .libs/slatrd.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfb.lo ../../../../src/gmxlib/gmx_lapack/slarfb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfb.c  -fPIC -DPIC -o .libs/slarfb.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorml2.lo ../../../../src/gmxlib/gmx_lapack/sorml2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorml2.c  -fPIC -DPIC -o .libs/sorml2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgeqrf.lo ../../../../src/gmxlib/gmx_lapack/sgeqrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqrf.c  -fPIC -DPIC -o .libs/sgeqrf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagtf.lo ../../../../src/gmxlib/gmx_lapack/slagtf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagtf.c  -fPIC -DPIC -o .libs/slagtf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfg.lo ../../../../src/gmxlib/gmx_lapack/slarfg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfg.c  -fPIC -DPIC -o .libs/slarfg.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slas2.lo ../../../../src/gmxlib/gmx_lapack/slas2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slas2.c  -fPIC -DPIC -o .libs/slas2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorg2r.lo ../../../../src/gmxlib/gmx_lapack/sorg2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c  -fPIC -DPIC -o .libs/sorg2r.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormlq.lo ../../../../src/gmxlib/gmx_lapack/sormlq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormlq.c  -fPIC -DPIC -o .libs/sormlq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq4.lo ../../../../src/gmxlib/gmx_lapack/slasq4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq4.c  -fPIC -DPIC -o .libs/slasq4.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytd2.lo ../../../../src/gmxlib/gmx_lapack/ssytd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytd2.c  -fPIC -DPIC -o .libs/ssytd2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd7.lo ../../../../src/gmxlib/gmx_lapack/slasd7.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd7.c  -fPIC -DPIC -o .libs/slasd7.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c  -fPIC -DPIC -o .libs/slagts.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c  -fPIC -DPIC -o .libs/sgesdd.o
../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c  -fPIC -DPIC -o .libs/ssyevr.o
../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
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../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
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make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
In file included from ../../../src/gmxlib/maths.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_setup':
../../../src/gmxlib/network.c:75:12: warning: unused variable 'flag' [-Wunused-variable]
   int    i,flag;
            ^~~~
../../../src/gmxlib/network.c:75:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,flag;
          ^
../../../src/gmxlib/network.c:73:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx_mpi.la -rpath /usr/lib64 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libgmx_mpi.so.5 -o .libs/libgmx_mpi.so.5.0.0
(cd .libs && rm -f libgmx_mpi.so.5 && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so.5)
(cd .libs && rm -f libgmx_mpi.so && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so)
creating libgmx_mpi.la
(cd .libs && rm -f libgmx_mpi.la && ln -s ../libgmx_mpi.la libgmx_mpi.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
In file included from ../../../src/mdlib/force.c:69:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'gmx_tx':
../../../src/mdlib/partdec.c:83:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/partdec.c:82:18: warning: unused variable 'flag' [-Wunused-variable]
   int        tag,flag;
                  ^~~~
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'finish_run':
../../../src/mdlib/sim_util.c:1134:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/sim_util.c:1133:10: warning: unused variable 'nrnb_buf' [-Wunused-variable]
   double nrnb_buf[4];
          ^~~~~~~~
../../../src/mdlib/sim_util.c:1132:10: warning: unused variable 'sender' [-Wunused-variable]
   int    sender;
          ^~~~~~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft':
../../../src/mdlib/gmx_parallel_3dfft.c:283:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft_complex2real':
../../../src/mdlib/gmx_parallel_3dfft.c:484:18: warning: variable 'cdata' set but not used [-Wunused-but-set-variable]
     t_complex *  cdata;
                  ^~~~~
../../../src/mdlib/gmx_parallel_3dfft.c:483:18: warning: variable 'work' set but not used [-Wunused-but-set-variable]
     t_complex *  work;
                  ^~~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:24: warning: variable 'nzc' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                        ^~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:21: warning: variable 'ny' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                     ^~
../../../src/mdlib/gmx_parallel_3dfft.c:480:18: warning: variable 'nx' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                  ^~
../../../src/mdlib/gmx_parallel_3dfft.c:479:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:20: warning: unused variable 'j' [-Wunused-variable]
     int          i,j,k;
                    ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:18: warning: unused variable 'i' [-Wunused-variable]
     int          i,j,k;
                  ^
In file included from ../../../include/gmx_parallel_3dfft.h:30,
                 from ../../../src/mdlib/gmx_parallel_3dfft.c:32:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd_mpi.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi.so.5 -o .libs/libmd_mpi.so.5.0.0
(cd .libs && rm -f libmd_mpi.so.5 && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so.5)
(cd .libs && rm -f libmd_mpi.so && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so)
creating libmd_mpi.la
(cd .libs && rm -f libmd_mpi.la && ln -s ../libmd_mpi.la libmd_mpi.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess_mpi.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess_mpi.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess_mpi.a
creating libgmxpreprocess_mpi.la
(cd .libs && rm -f libgmxpreprocess_mpi.la && ln -s ../libgmxpreprocess_mpi.la libgmxpreprocess_mpi.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+4)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi.la	../mdlib/libmd_mpi.la	 -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx_mpi.so ../mdlib/.libs/libmd_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi.so.5 -o .libs/libgmxana_mpi.so.5.0.0
(cd .libs && rm -f libgmxana_mpi.so.5 && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5)
(cd .libs && rm -f libgmxana_mpi.so && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so)
creating libgmxana_mpi.la
(cd .libs && rm -f libgmxana_mpi.la && ln -s ../libgmxana_mpi.la libgmxana_mpi.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_genconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_editconf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_eneconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_genpr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjcat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjcat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating mk_angndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjorder.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjorder
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjconv.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_wheel.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating wheel
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genion
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating anadock
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_edi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_anaeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_angle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_analyze
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_bundle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bundle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_cluster
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_chi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
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/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_confrms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_confrms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_current.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_current
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_covar
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_density.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_density
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_densmap.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_densmap
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dih.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dih
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_helixorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helixorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dielectric
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_principal.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_principal
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dipoles
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_disre.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_disre
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_lie.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_lie
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dyndom.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dyndom
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_enemat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_enemat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_energy
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_filter.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_filter
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_h2order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_h2order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_gyrate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helix
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_msd
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_hbond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_mindist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mindist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_morph.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_morph
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmens
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_order.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_polystat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_potential.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_potential
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_rama.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsdist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rotacf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_saltbr.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sas
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sgangle.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sgangle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sorient.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_spol.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spol
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_spatial.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spatial
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sdf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_tcaf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_traj.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_traj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_vanhove.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_vanhove
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_velacc
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_clustsize.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_clustsize
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_mdmat.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mdmat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_wham.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating sigeps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_kinetics.o  -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_kinetics
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib64  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd_mpi -lgmx_mpi -lgsl  -lfftw3f -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs,' | \
sed 's,@CC\@,mpicc,' | \
sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ mkdir mpi-double
+ pushd mpi-double
~/RPM/BUILD/gromacs-4.0.7/mpi-double ~/RPM/BUILD/gromacs-4.0.7
+ buildThis double enable _mpi_d
+ ln -s ../configure .
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FFLAGS
+ FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2'
+ export FCFLAGS
+ '[' -n '' ']'
++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2'
++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g'
+ ASFLAGS=
+ export ASFLAGS
+ export lt_cv_prog_cc_static_works=no
+ lt_cv_prog_cc_static_works=no
+ export lt_cv_deplibs_check_method=pass_all
+ lt_cv_deplibs_check_method=pass_all
+ readlink -e -- ./configure
+ xargs -ri dirname -- '{}'
+ xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n'
+ sort -u
+ xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess
+ ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-double --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --enable-mpi --program-suffix=_mpi_d --with-external-blas=-lopenblas
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces
checking build system type... x86_64-alt-linux-gnu
checking host system type... x86_64-alt-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '691' is supported by ustar format... yes
checking whether GID '691' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for x86_64-alt-linux-cc... no
checking for x86_64-alt-linux-icc... no
checking for x86_64-alt-linux-xlc... no
checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-alt-linux-gcc accepts -g... yes
checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed
checking whether x86_64-alt-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-alt-linux-gcc... none
checking for x86_64-alt-linux-f77... no
checking for x86_64-alt-linux-ifort... no
checking for x86_64-alt-linux-xlf... no
checking for x86_64-alt-linux-xlf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fl32... no
checking for x86_64-alt-linux-g77... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-f90... no
checking for x86_64-alt-linux-xlf90... no
checking for x86_64-alt-linux-pgf77... no
checking for x86_64-alt-linux-cf77... no
checking for x86_64-alt-linux-fort... no
checking for x86_64-alt-linux-fort77... no
checking for x86_64-alt-linux-pgf90... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking dependency style of x86_64-alt-linux-gcc... none
checking for mpxlc... no
checking for mpicc... mpicc
checking whether the MPI cc command works... yes
checking for catamount... no
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77...  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... mpicc -E
checking whether mpicc accepts -O3... yes
checking whether mpicc accepts -funroll-all-loops... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
******************************************
* Using FFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... (cached) pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alt-linux-g++ accepts -g... yes
checking dependency style of x86_64-alt-linux-g++... none
checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for objdir... .libs
checking for x86_64-alt-linux-ar... no
checking for ar... ar
checking for x86_64-alt-linux-ranlib... no
checking for ranlib... ranlib
checking for x86_64-alt-linux-strip... no
checking for strip... strip
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC
checking if mpicc PIC flag -fPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC
checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes
checking if x86_64-alt-linux-g++ static flag -static works... no
checking if x86_64-alt-linux-g++ supports -c -o file.o... yes
checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... no
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... no
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking size of int... (cached) 4
checking size of long int... (cached) 8
checking size of long long int... (cached) 8
checking size of off_t... (cached) 8
checking size of void*... 8
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking gsl/gsl_version.h usability... yes
checking gsl/gsl_version.h presence... yes
checking for gsl/gsl_version.h... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking libxml/parser.h usability... no
checking libxml/parser.h presence... no
checking for libxml/parser.h... no
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports X86_64 SSE2... yes
checking whether byte ordering is bigendian... (cached) no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces

+ sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+ sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+ make -j8
Making all in include
Making all in .
make[2]: Nothing to be done for 'all-am'.
Making all in types
make[2]: Nothing to be done for 'all'.
Making all in src
make  all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_x86_64_sse2
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s
mkdir .libs
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel103_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel103_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel111_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel111_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel113_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel113_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel112_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel112_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse2.o
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/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2_test.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2_test.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool    --mode=compile mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s
 mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s  -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse2.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c  -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2.o
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c: In function 'nb_kernel_x86_64_sse2_test':
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:206:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if(log)
     ^~
../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:209:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  nb_kernel_x86_64_sse2_present = TRUE;
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel_x86_64_sse2.la  nb_kernel010_x86_64_sse2.lo nb_kernel030_x86_64_sse2.lo nb_kernel100_x86_64_sse2.lo nb_kernel101_x86_64_sse2.lo nb_kernel102_x86_64_sse2.lo nb_kernel103_x86_64_sse2.lo nb_kernel104_x86_64_sse2.lo nb_kernel110_x86_64_sse2.lo nb_kernel111_x86_64_sse2.lo nb_kernel112_x86_64_sse2.lo nb_kernel113_x86_64_sse2.lo nb_kernel114_x86_64_sse2.lo nb_kernel130_x86_64_sse2.lo nb_kernel131_x86_64_sse2.lo nb_kernel132_x86_64_sse2.lo nb_kernel133_x86_64_sse2.lo nb_kernel134_x86_64_sse2.lo nb_kernel200_x86_64_sse2.lo nb_kernel201_x86_64_sse2.lo nb_kernel202_x86_64_sse2.lo nb_kernel203_x86_64_sse2.lo nb_kernel204_x86_64_sse2.lo nb_kernel210_x86_64_sse2.lo nb_kernel211_x86_64_sse2.lo nb_kernel212_x86_64_sse2.lo nb_kernel213_x86_64_sse2.lo nb_kernel214_x86_64_sse2.lo nb_kernel230_x86_64_sse2.lo nb_kernel231_x86_64_sse2.lo nb_kernel232_x86_64_sse2.lo nb_kernel233_x86_64_sse2.lo nb_kernel234_x86_64_sse2.lo nb_kernel300_x86_64_sse2.lo nb_kernel301_x86_64_sse2.lo nb_kernel302_x86_64_sse2.lo nb_kernel303_x86_64_sse2.lo nb_kernel304_x86_64_sse2.lo nb_kernel310_x86_64_sse2.lo nb_kernel311_x86_64_sse2.lo nb_kernel312_x86_64_sse2.lo nb_kernel313_x86_64_sse2.lo nb_kernel314_x86_64_sse2.lo nb_kernel330_x86_64_sse2.lo nb_kernel331_x86_64_sse2.lo nb_kernel332_x86_64_sse2.lo nb_kernel333_x86_64_sse2.lo nb_kernel334_x86_64_sse2.lo nb_kernel400_x86_64_sse2.lo nb_kernel410_x86_64_sse2.lo nb_kernel430_x86_64_sse2.lo nb_kernel_x86_64_sse2_test.lo nb_kernel_x86_64_sse2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel_x86_64_sse2.a .libs/nb_kernel010_x86_64_sse2.o .libs/nb_kernel030_x86_64_sse2.o .libs/nb_kernel100_x86_64_sse2.o .libs/nb_kernel101_x86_64_sse2.o .libs/nb_kernel102_x86_64_sse2.o .libs/nb_kernel103_x86_64_sse2.o .libs/nb_kernel104_x86_64_sse2.o .libs/nb_kernel110_x86_64_sse2.o .libs/nb_kernel111_x86_64_sse2.o .libs/nb_kernel112_x86_64_sse2.o .libs/nb_kernel113_x86_64_sse2.o .libs/nb_kernel114_x86_64_sse2.o .libs/nb_kernel130_x86_64_sse2.o .libs/nb_kernel131_x86_64_sse2.o .libs/nb_kernel132_x86_64_sse2.o .libs/nb_kernel133_x86_64_sse2.o .libs/nb_kernel134_x86_64_sse2.o .libs/nb_kernel200_x86_64_sse2.o .libs/nb_kernel201_x86_64_sse2.o .libs/nb_kernel202_x86_64_sse2.o .libs/nb_kernel203_x86_64_sse2.o .libs/nb_kernel204_x86_64_sse2.o .libs/nb_kernel210_x86_64_sse2.o .libs/nb_kernel211_x86_64_sse2.o .libs/nb_kernel212_x86_64_sse2.o .libs/nb_kernel213_x86_64_sse2.o .libs/nb_kernel214_x86_64_sse2.o .libs/nb_kernel230_x86_64_sse2.o .libs/nb_kernel231_x86_64_sse2.o .libs/nb_kernel232_x86_64_sse2.o .libs/nb_kernel233_x86_64_sse2.o .libs/nb_kernel234_x86_64_sse2.o .libs/nb_kernel300_x86_64_sse2.o .libs/nb_kernel301_x86_64_sse2.o .libs/nb_kernel302_x86_64_sse2.o .libs/nb_kernel303_x86_64_sse2.o .libs/nb_kernel304_x86_64_sse2.o .libs/nb_kernel310_x86_64_sse2.o .libs/nb_kernel311_x86_64_sse2.o .libs/nb_kernel312_x86_64_sse2.o .libs/nb_kernel313_x86_64_sse2.o .libs/nb_kernel314_x86_64_sse2.o .libs/nb_kernel330_x86_64_sse2.o .libs/nb_kernel331_x86_64_sse2.o .libs/nb_kernel332_x86_64_sse2.o .libs/nb_kernel333_x86_64_sse2.o .libs/nb_kernel334_x86_64_sse2.o .libs/nb_kernel400_x86_64_sse2.o .libs/nb_kernel410_x86_64_sse2.o .libs/nb_kernel430_x86_64_sse2.o .libs/nb_kernel_x86_64_sse2_test.o .libs/nb_kernel_x86_64_sse2.o
ranlib .libs/libnb_kernel_x86_64_sse2.a
creating libnb_kernel_x86_64_sse2.la
(cd .libs && rm -f libnb_kernel_x86_64_sse2.la && ln -s ../libnb_kernel_x86_64_sse2.la libnb_kernel_x86_64_sse2.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
Making all in nb_kernel
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
rm -f kernel-stamp
./mknb -double -software_invsqrt   -fortran
>>> Gromacs nonbonded kernel generator (-h for help)
>>> Generating double precision functions in Fortran77.
>>> Using Gromacs software version of 1/sqrt(x).

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make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make  all-am
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c  -fPIC -DPIC -o .libs/nb_kernel.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f
mkdir .libs
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f  -fPIC -o .libs/nb_kernel010_f.o
nb_kernel010_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:169:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:185:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:172:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:181:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:170:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:168:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:165:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:183:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:182:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:180:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:171:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:186:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:184:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:178:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:173:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:179:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel010_f.f:189:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f  -fPIC -o .libs/nb_kernel100_f.o
nb_kernel100_f.f:125:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:272:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel100_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:204:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:191:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:200:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:187:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:184:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:202:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:201:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:199:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:190:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:205:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:203:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:194:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:197:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:193:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:195:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:198:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:196:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel100_f.f:208:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f  -fPIC -o .libs/nb_kernel020_f.o
nb_kernel020_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:287:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel020_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:198:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:214:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:201:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:210:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:199:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:197:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:194:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:212:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:211:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:209:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:200:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:215:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:213:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:207:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:202:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:208:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel020_f.f:218:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f  -fPIC -o .libs/nb_kernel030_f.o
nb_kernel030_f.f:132:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:146:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:310:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel030_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel030_f.f:36:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:37:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:40:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:220:38:

      &                          charge,
                                      1
Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:236:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:223:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:232:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:221:37:

      &                          facel,
                                     1
Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:219:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:216:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:234:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:233:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:231:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:222:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:237:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:235:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:224:34:

      &                          Vc,
                                  1
Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument]
nb_kernel030_f.f:240:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f  -fPIC -o .libs/nb_kernel101_f.o
nb_kernel101_f.f:153:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:162:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:171:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:374:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:383:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:392:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel101_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel101_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f  -fPIC -o .libs/nb_kernel103_f.o
nb_kernel103_f.f:153:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:162:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:171:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:374:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:383:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:392:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel103_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:284:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:271:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:280:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:267:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:264:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:282:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:281:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:279:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:270:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:285:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:283:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:274:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:277:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:273:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:275:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:278:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:276:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel103_f.f:288:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f  -fPIC -o .libs/nb_kernel102_f.o
nb_kernel102_f.f:193:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:202:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:211:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:220:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:247:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:592:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:601:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:610:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:619:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:628:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:637:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:646:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:655:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:664:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel102_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel102_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f  -fPIC -o .libs/nb_kernel110_f.o
nb_kernel110_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:297:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel110_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:220:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:207:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:216:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:203:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:200:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:218:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:217:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:215:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:206:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:221:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:219:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:213:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:214:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel110_f.f:224:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f  -fPIC -o .libs/nb_kernel113_f.o
nb_kernel113_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:192:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:435:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:444:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:453:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel113_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:326:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:313:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:322:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:309:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:306:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:324:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:323:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:321:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:312:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:327:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:325:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:319:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:320:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel113_f.f:330:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f  -fPIC -o .libs/nb_kernel111_f.o
nb_kernel111_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:399:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:408:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:417:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel111_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:300:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:287:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:296:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:283:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:280:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:298:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:297:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:295:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:286:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:301:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:299:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:293:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:294:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel111_f.f:304:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f  -fPIC -o .libs/nb_kernel104_f.o
nb_kernel104_f.f:193:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:202:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:211:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:220:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:229:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:238:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:247:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:256:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:265:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:592:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:601:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:610:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:619:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:628:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:637:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:646:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:655:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:664:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel104_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:462:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:449:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:458:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:445:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:442:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:460:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:459:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:457:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:448:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:463:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:461:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:452:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:455:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:451:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:453:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:456:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:454:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel104_f.f:466:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f  -fPIC -o .libs/nb_kernel120_f.o
nb_kernel120_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:299:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel120_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:222:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:209:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:218:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:205:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:202:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:220:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:219:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:217:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:208:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:223:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:221:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:215:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:216:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel120_f.f:226:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f  -fPIC -o .libs/nb_kernel112_f.o
nb_kernel112_f.f:202:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:211:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:220:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:229:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:238:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:247:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:256:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:265:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:274:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:616:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:625:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:634:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:643:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:652:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:661:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:670:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:679:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:688:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel112_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:476:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:463:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:472:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:459:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:456:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:474:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:473:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:471:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:462:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:477:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:475:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:469:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:470:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel112_f.f:480:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f  -fPIC -o .libs/nb_kernel114_f.o
nb_kernel114_f.f:219:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:228:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:237:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:246:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:255:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:264:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:273:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:282:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:291:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:660:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:669:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:678:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:687:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:696:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:705:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:714:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:723:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:732:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel114_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:506:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:493:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:502:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:489:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:486:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:504:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:503:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:501:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:492:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:507:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:505:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:499:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:500:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel114_f.f:510:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f  -fPIC -o .libs/nb_kernel121_f.o
nb_kernel121_f.f:161:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:170:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:179:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:401:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:410:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:419:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel121_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:302:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:289:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:298:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:285:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:282:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:300:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:299:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:297:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:288:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:303:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:301:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:295:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:296:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel121_f.f:306:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f  -fPIC -o .libs/nb_kernel130_f.o
nb_kernel130_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:325:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel130_f.f:342:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel130_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:247:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:234:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:243:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:230:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:227:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:245:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:244:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:242:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:233:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:248:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:246:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel130_f.f:251:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f  -fPIC -o .libs/nb_kernel123_f.o
nb_kernel123_f.f:173:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:182:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:191:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:200:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:445:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:454:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:463:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:472:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel123_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:337:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:324:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:333:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:320:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:317:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:335:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:334:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:332:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:323:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:338:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:336:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:330:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:331:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel123_f.f:341:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f  -fPIC -o .libs/nb_kernel122_f.o
nb_kernel122_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:619:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:628:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:637:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:646:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:655:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:664:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:673:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:682:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:691:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel122_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:478:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:465:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:474:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:461:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:458:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:476:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:475:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:473:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:464:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:479:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:477:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:471:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:472:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel122_f.f:482:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f  -fPIC -o .libs/nb_kernel131_f.o
nb_kernel131_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:427:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:436:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:445:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel131_f.f:463:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel131_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel131_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f  -fPIC -o .libs/nb_kernel133_f.o
nb_kernel133_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:469:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:478:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:487:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:496:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel133_f.f:510:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel133_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel133_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f  -fPIC -o .libs/nb_kernel124_f.o
nb_kernel124_f.f:219:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:228:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:237:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:246:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:255:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:264:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:273:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:282:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:291:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:300:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:671:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:698:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:725:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:734:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:743:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:752:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel124_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:517:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:504:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:513:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:500:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:497:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:515:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:514:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:512:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:503:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:518:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:516:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:510:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:511:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel124_f.f:521:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f  -fPIC -o .libs/nb_kernel200_f.o
nb_kernel200_f.f:126:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:275:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel200_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:206:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:202:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:189:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:186:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:204:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:203:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:201:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:207:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:205:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:196:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:199:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:195:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:197:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:200:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:198:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel200_f.f:210:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f  -fPIC -o .libs/nb_kernel132_f.o
nb_kernel132_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:644:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:653:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:662:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:671:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:680:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:689:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:698:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:707:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:716:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel132_f.f:730:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel132_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:503:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:490:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:499:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:486:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:483:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:501:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:500:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:498:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:489:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:504:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:502:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel132_f.f:507:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f  -fPIC -o .libs/nb_kernel201_f.o
nb_kernel201_f.f:154:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:163:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:172:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:379:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:388:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:397:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel201_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel201_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f  -fPIC -o .libs/nb_kernel203_f.o
nb_kernel203_f.f:154:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:163:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:172:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:379:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:388:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:397:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel203_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:288:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:284:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:271:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:268:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:286:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:285:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:283:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:289:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:287:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:278:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:281:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:277:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:279:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:282:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:280:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel203_f.f:292:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f  -fPIC -o .libs/nb_kernel210_f.o
nb_kernel210_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:301:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel210_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:223:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:219:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:206:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:203:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:221:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:220:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:218:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:224:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:222:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:216:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:217:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel210_f.f:227:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f  -fPIC -o .libs/nb_kernel134_f.o
nb_kernel134_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:694:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:703:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:712:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:721:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:730:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:739:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:748:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:757:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:766:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:775:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel134_f.f:786:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel134_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:540:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:527:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:536:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:523:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:520:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:538:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:537:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:535:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:526:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:541:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:539:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel134_f.f:544:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f  -fPIC -o .libs/nb_kernel202_f.o
nb_kernel202_f.f:194:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:203:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:212:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:221:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:230:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:239:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:248:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:257:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:266:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:603:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:612:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:621:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:630:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:639:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:648:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:657:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:666:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:675:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel202_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel202_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f  -fPIC -o .libs/nb_kernel211_f.o
nb_kernel211_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:405:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:414:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:423:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel211_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:305:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:301:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:288:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:285:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:303:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:302:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:300:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:306:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:304:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:298:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:299:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel211_f.f:309:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f  -fPIC -o .libs/nb_kernel204_f.o
nb_kernel204_f.f:194:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:203:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:212:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:221:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:230:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:239:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:248:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:257:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:266:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:603:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:612:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:621:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:630:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:639:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:648:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:657:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:666:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:675:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel204_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:472:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:468:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:455:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:452:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:470:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:469:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:467:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:473:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:471:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:462:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:465:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:461:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:463:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:466:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:464:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel204_f.f:476:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f  -fPIC -o .libs/nb_kernel213_f.o
nb_kernel213_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:193:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:440:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:449:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:458:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel213_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:330:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:326:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:313:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:310:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:328:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:327:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:325:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:331:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:329:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:323:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:324:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel213_f.f:334:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f  -fPIC -o .libs/nb_kernel220_f.o
nb_kernel220_f.f:134:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:303:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel220_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:225:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:221:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:208:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:205:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:223:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:222:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:220:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:226:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:224:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:218:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:219:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel220_f.f:229:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f  -fPIC -o .libs/nb_kernel212_f.o
nb_kernel212_f.f:203:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:212:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:221:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:230:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:239:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:248:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:257:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:266:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:275:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:628:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:637:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:646:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:655:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:664:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:673:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:682:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:691:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:700:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel212_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:487:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:483:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:470:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:467:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:485:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:484:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:482:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:488:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:486:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:480:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:481:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel212_f.f:491:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f  -fPIC -o .libs/nb_kernel221_f.o
nb_kernel221_f.f:162:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:171:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:180:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:407:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:416:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:425:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel221_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:307:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:303:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:290:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:287:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:305:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:304:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:302:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:308:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:306:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:300:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:301:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel221_f.f:311:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f  -fPIC -o .libs/nb_kernel230_f.o
nb_kernel230_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:157:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:328:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel230_f.f:346:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel230_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:249:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:245:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:232:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:229:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:247:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:246:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:244:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:250:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:248:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel230_f.f:253:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f  -fPIC -o .libs/nb_kernel214_f.o
nb_kernel214_f.f:220:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:229:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:238:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:247:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:256:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:265:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:274:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:283:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:292:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:671:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:680:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:689:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:698:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:707:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:716:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:725:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:734:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:743:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel214_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:516:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:512:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:499:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:496:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:514:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:513:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:511:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:517:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:515:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:509:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:510:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel214_f.f:520:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f  -fPIC -o .libs/nb_kernel223_f.o
nb_kernel223_f.f:174:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:183:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:192:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:201:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:477:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel223_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:341:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:337:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:324:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:321:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:339:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:338:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:336:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:342:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:340:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:334:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:335:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel223_f.f:345:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f  -fPIC -o .libs/nb_kernel222_f.o
nb_kernel222_f.f:204:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:213:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:222:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:231:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:240:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:249:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:258:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:267:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:276:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:631:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:640:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:649:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:658:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:667:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:676:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:685:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:694:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:703:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel222_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:489:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:485:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:472:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:469:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:487:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:486:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:484:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:490:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:488:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:482:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:483:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel222_f.f:493:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f  -fPIC -o .libs/nb_kernel231_f.o
nb_kernel231_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:204:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:432:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:441:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:450:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel231_f.f:469:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel231_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:331:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:327:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:314:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:311:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:329:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:328:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:326:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:332:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:330:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel231_f.f:335:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f  -fPIC -o .libs/nb_kernel224_f.o
nb_kernel224_f.f:220:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:229:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:238:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:247:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:256:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:265:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:274:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:283:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:292:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:301:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:682:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:709:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:736:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:745:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:754:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:763:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel224_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:527:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:523:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:510:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:507:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:525:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:524:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:522:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:528:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:526:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:520:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:521:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel224_f.f:531:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f  -fPIC -o .libs/nb_kernel232_f.o
nb_kernel232_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:295:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:655:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:664:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:673:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:682:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:691:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:700:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:709:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:718:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:727:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel232_f.f:742:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel232_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:513:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:509:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:496:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:493:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:511:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:510:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:508:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:514:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:512:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel232_f.f:517:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f  -fPIC -o .libs/nb_kernel300_f.o
nb_kernel300_f.f:129:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:141:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:292:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel300_f.f:304:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel300_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:221:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:208:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:217:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:204:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:201:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:219:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:218:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:216:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:207:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:222:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:220:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:211:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:210:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:212:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:213:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel300_f.f:225:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f  -fPIC -o .libs/nb_kernel233_f.o
nb_kernel233_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:219:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:474:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:483:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:492:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:501:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel233_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel233_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:364:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:360:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:347:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:344:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:362:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:361:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:359:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:365:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:363:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel233_f.f:368:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f  -fPIC -o .libs/nb_kernel301_f.o
nb_kernel301_f.f:157:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:166:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:175:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:215:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:420:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:429:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:438:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel301_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:466:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel301_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel301_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f  -fPIC -o .libs/nb_kernel234_f.o
nb_kernel234_f.f:223:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:232:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:241:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:250:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:259:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:268:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:277:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:286:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:295:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:304:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:315:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:705:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:714:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:723:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:732:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:741:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:750:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:759:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:768:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:777:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:786:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel234_f.f:797:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel234_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:550:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:546:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:533:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:530:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:548:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:547:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:545:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:551:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:549:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel234_f.f:554:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f  -fPIC -o .libs/nb_kernel303_f.o
nb_kernel303_f.f:157:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:166:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:175:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:188:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:214:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:241:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:420:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:429:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:438:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel303_f.f:451:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:465:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:480:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel303_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:327:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:314:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:323:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:310:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:307:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:325:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:324:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:322:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:313:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:328:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:326:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:317:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:316:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:318:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:319:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel303_f.f:331:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f  -fPIC -o .libs/nb_kernel310_f.o
nb_kernel310_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:154:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:320:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel310_f.f:336:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel310_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:240:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:227:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:236:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:223:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:220:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:238:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:237:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:235:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:226:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:241:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:239:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel310_f.f:244:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f  -fPIC -o .libs/nb_kernel311_f.o
nb_kernel311_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:201:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:233:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:259:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:448:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:457:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:466:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel311_f.f:483:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:502:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:516:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel311_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:346:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:333:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:342:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:329:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:326:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:344:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:343:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:341:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:332:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:347:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:345:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel311_f.f:350:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f  -fPIC -o .libs/nb_kernel302_f.o
nb_kernel302_f.f:197:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:206:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:215:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:224:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:251:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:716:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:725:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:734:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:743:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:752:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:761:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:770:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:779:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:788:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel302_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel302_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel302_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f  -fPIC -o .libs/nb_kernel304_f.o
nb_kernel304_f.f:197:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:206:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:215:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:224:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:233:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:242:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:251:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:260:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:269:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:281:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:308:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:335:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:362:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:389:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:416:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:443:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:470:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:497:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:716:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:725:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:734:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:743:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:752:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:761:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:770:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:779:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:788:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel304_f.f:800:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:815:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:830:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:845:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:860:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:875:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:890:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:905:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:920:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel304_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:583:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:570:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:579:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:566:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:563:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:581:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:580:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:578:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:569:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:584:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:582:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:573:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:572:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:574:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:575:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel304_f.f:587:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f  -fPIC -o .libs/nb_kernel313_f.o
nb_kernel313_f.f:179:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:188:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:197:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:227:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:253:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:280:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:482:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:491:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:500:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel313_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:534:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel313_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:370:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:357:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:366:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:353:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:350:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:368:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:367:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:365:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:356:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:371:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:369:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel313_f.f:374:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f  -fPIC -o .libs/nb_kernel320_f.o
nb_kernel320_f.f:138:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:155:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:322:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel320_f.f:339:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel320_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:242:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:229:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:238:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:225:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:222:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:240:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:239:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:237:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:228:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:243:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:241:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel320_f.f:246:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f  -fPIC -o .libs/nb_kernel312_f.o
nb_kernel312_f.f:207:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:216:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:225:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:234:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:243:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:252:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:261:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:270:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:279:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:292:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:324:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:351:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:378:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:405:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:432:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:459:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:513:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:743:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:752:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:761:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:770:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:779:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:788:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:797:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:806:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:815:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel312_f.f:828:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:847:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:862:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:877:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:892:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:907:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:922:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:937:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:952:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel312_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:600:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:587:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:596:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:583:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:580:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:598:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:597:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:595:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:586:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:601:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:599:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel312_f.f:604:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f  -fPIC -o .libs/nb_kernel321_f.o
nb_kernel321_f.f:166:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:175:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:184:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:202:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:235:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:261:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:450:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:459:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:468:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel321_f.f:486:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:506:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:520:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel321_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:348:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:335:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:344:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:331:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:328:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:346:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:345:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:343:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:334:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:349:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:347:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel321_f.f:352:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f  -fPIC -o .libs/nb_kernel323_f.o
nb_kernel323_f.f:178:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:187:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:196:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:205:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:238:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:264:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:291:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:492:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:501:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:510:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:519:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel323_f.f:542:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:556:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:571:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel323_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:381:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:368:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:377:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:364:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:361:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:379:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:378:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:376:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:367:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:382:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:380:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel323_f.f:385:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f  -fPIC -o .libs/nb_kernel314_f.o
nb_kernel314_f.f:224:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:233:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:242:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:251:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:260:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:269:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:278:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:287:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:296:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:322:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:349:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:376:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:403:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:430:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:457:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:484:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:511:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:538:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:785:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:794:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:803:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:812:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:821:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:830:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:839:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:848:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:857:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel314_f.f:873:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:888:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:903:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:918:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:933:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:948:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:963:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:978:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:993:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel314_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:628:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:615:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:624:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:611:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:608:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:626:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:625:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:623:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:614:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:629:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:627:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel314_f.f:632:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f  -fPIC -o .libs/nb_kernel330_f.o
nb_kernel330_f.f:137:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:152:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:332:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel330_f.f:347:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel330_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:252:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:251:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:249:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel330_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f  -fPIC -o .libs/nb_kernel322_f.o
nb_kernel322_f.f:208:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:217:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:226:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:235:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:244:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:253:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:262:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:271:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:280:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:293:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:326:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:380:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:407:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:434:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:461:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:488:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:515:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:746:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:755:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:764:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:773:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:782:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:791:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:800:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:809:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:818:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel322_f.f:831:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:851:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:866:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:881:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:896:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:911:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:926:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:941:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:956:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel322_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:602:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:589:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:598:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:585:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:582:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:600:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:599:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:597:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:588:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:603:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:601:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel322_f.f:606:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f  -fPIC -o .libs/nb_kernel331_f.o
nb_kernel331_f.f:165:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:174:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:183:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:199:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:247:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:273:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:460:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:469:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:478:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel331_f.f:494:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:526:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:540:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel331_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:360:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:347:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:356:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:343:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:340:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:358:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:357:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:355:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:346:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:361:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:359:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel331_f.f:364:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f  -fPIC -o .libs/nb_kernel410_f.o
nb_kernel410_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:162:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:334:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel410_f.f:353:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel410_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:252:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:239:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:248:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:235:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:232:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:238:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:253:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:251:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:245:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:246:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel410_f.f:256:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f  -fPIC -o .libs/nb_kernel333_f.o
nb_kernel333_f.f:177:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:186:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:195:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:204:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:218:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:257:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:283:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:310:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:509:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:518:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:527:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:536:29:

           fval             = rsq41
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel333_f.f:550:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:575:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:589:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:604:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel333_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:400:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:387:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:396:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:383:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:380:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:398:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:397:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:395:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:386:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:401:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:399:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel333_f.f:404:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f  -fPIC -o .libs/nb_kernel324_f.o
nb_kernel324_f.f:224:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:233:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:242:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:251:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:260:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:269:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:278:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:287:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:296:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:305:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:333:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:360:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:387:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:414:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:441:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:468:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:495:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:522:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:549:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:796:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:805:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:814:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:823:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:832:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:841:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:850:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:859:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:868:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:877:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel324_f.f:895:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:910:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:925:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:940:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:955:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:970:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:985:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1000:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:1015:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel324_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:639:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:626:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:635:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:622:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:619:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:637:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:636:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:634:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:625:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:640:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:638:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel324_f.f:643:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f  -fPIC -o .libs/nb_kernel400_f.o
nb_kernel400_f.f:133:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:149:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:306:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel400_f.f:321:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel400_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:42:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:41:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:43:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:44:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:233:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:220:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:229:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:216:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:213:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:219:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:234:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:232:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:223:37:

      &                          ntype,
                                     1
Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:226:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:222:36:

      &                          type,
                                    1
Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:224:40:

      &                          vdwparam,
                                        1
Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:227:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:225:36:

      &                          Vvdw,
                                    1
Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument]
nb_kernel400_f.f:237:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f  -fPIC -o .libs/nb_kernel420_f.o
nb_kernel420_f.f:142:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:163:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:336:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel420_f.f:356:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel420_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:45:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:46:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:254:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:241:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:250:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:237:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:234:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:240:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:255:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:253:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:247:40:

      &                          tabscale,
                                        1
Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:248:37:

      &                          VFtab,
                                     1
Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument]
nb_kernel420_f.f:258:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f  -fPIC -o .libs/nb_kernel332_f.o
nb_kernel332_f.f:206:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:215:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:224:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:233:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:242:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:251:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:260:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:269:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:278:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:290:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:338:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:365:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:392:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:419:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:446:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:473:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:500:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:527:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:755:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:764:29:

           fval             = rsq12
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:773:29:

           fval             = rsq13
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:782:29:

           fval             = rsq21
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:791:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:800:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:809:29:

           fval             = rsq31
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:818:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:827:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel332_f.f:839:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:871:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:886:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:901:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:916:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:931:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:946:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:961:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:976:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel332_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:614:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:601:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:610:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:597:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:594:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:612:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:611:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:609:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:600:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:615:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:613:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel332_f.f:618:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src  -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c  -fPIC -DPIC -o .libs/nb_kernel_f77sync.o
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f  -fPIC -o .libs/nb_kernel430_f.o
nb_kernel430_f.f:141:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:160:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:179:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:351:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel430_f.f:369:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:383:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel430_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:271:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:258:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:267:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:254:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:251:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:257:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:272:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:270:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel430_f.f:275:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=F77   --mode=compile f77  -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f
 f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f  -fPIC -o .libs/nb_kernel334_f.o
nb_kernel334_f.f:222:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:231:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:240:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:249:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:258:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:267:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:276:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:285:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:294:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:303:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:314:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:352:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:379:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:406:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:433:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:460:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:487:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:514:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:541:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:568:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:812:29:

           fval             = rsq11
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:821:29:

           fval             = rsq22
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:830:29:

           fval             = rsq23
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:839:29:

           fval             = rsq24
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:848:29:

           fval             = rsq32
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:857:29:

           fval             = rsq33
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:866:29:

           fval             = rsq34
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:875:29:

           fval             = rsq42
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:884:29:

           fval             = rsq43
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:893:29:

           fval             = rsq44
                             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
nb_kernel334_f.f:904:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:928:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:943:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:958:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:973:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:988:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1003:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1018:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1033:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:1048:29:

           n0               = rt
                             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
nb_kernel334_f.f:52:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:39:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:48:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:50:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:49:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:47:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:38:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:53:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:51:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:56:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:658:37:

      &                          count,
                                     1
Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:645:35:

      &                          crf,
                                   1
Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:654:36:

      &                          dvda,
                                    1
Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:641:39:

      &                          faction,
                                       1
Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:638:38:

      &                          fshift,
                                      1
Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:656:37:

      &                          GBtab,
                                     1
Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:655:42:

      &                          gbtabscale,
                                          1
Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:653:40:

      &                          invsqrta,
                                        1
Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:644:35:

      &                          krf,
                                   1
Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:659:35:

      &                          mtx,
                                   1
Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:657:40:

      &                          nthreads,
                                        1
Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument]
nb_kernel334_f.f:662:36:

      &                          work)
                                    1
Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument]
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
/bin/sh ../../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnb_kernel.la  nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo  nb_kernel_f77sync.lo -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o
ranlib .libs/libnb_kernel.a
creating libnb_kernel.la
(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la)
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c  -fPIC -DPIC -o .libs/nb_generic.o
../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel':
../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable]
  int *         shift;
                ^~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable]
     real          facel,gbtabscale;
                         ^~~~~~~~~~
../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable]
     int           nri,ntype,table_nelements,icoul,ivdw;
                   ^~~
In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_generic.c:43:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c  -fPIC -DPIC -o .libs/nb_free_energy.o
../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel':
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                         ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable]
     real          Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF;
                       ^
../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable]
     real          rinvsix;
                   ^~~~~~~
../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable]
     real          qqA,qqB,vcoul,vctot,krsq;
                           ^~~~~
In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
At top level:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src  -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c  -fPIC -DPIC -o .libs/nonbonded.o
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded':
../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable]
  FILE *          fp;
                  ^~
../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable]
  bool            bWater;
                  ^~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable]
  int             n,n0,n1,i,i0,i1,nrnb_ind,sz;
                                           ^~
../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q':
../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable]
     t_nblist  tmplist;
               ^~~~~~~
../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable]
     int       i0=0,i1=1,i2=2;
                         ^~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53:
At top level:
../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../../include/vec.h:121,
                 from ../../../../src/gmxlib/nonbonded/nonbonded.c:50:
../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libnonbonded.la  nonbonded.lo nb_free_energy.lo nb_generic.lo                          nb_kernel_x86_64_sse2/libnb_kernel_x86_64_sse2.la             	 nb_kernel/libnb_kernel.la			 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
rm -fr .libs/libnonbonded.lax
mkdir .libs/libnonbonded.lax
rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a
mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a
(cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/.libs/libnb_kernel_x86_64_sse2.a)
rm -fr .libs/libnonbonded.lax/libnb_kernel.a
mkdir .libs/libnonbonded.lax/libnb_kernel.a
(cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a)
ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o  .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2_test.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel430_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel410_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel400_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel334_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel333_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel332_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel331_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel330_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel314_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel313_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel312_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel311_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel310_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel304_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel303_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel302_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel301_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel300_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel234_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel233_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel232_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel231_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel230_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel214_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel213_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel212_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel211_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel210_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel204_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel203_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel202_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel201_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel200_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel134_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel133_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel132_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel131_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel130_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel114_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel113_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel112_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel111_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel110_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel104_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel103_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel102_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel101_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel100_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel030_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel010_x86_64_sse2.o  .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o 
ranlib .libs/libnonbonded.a
rm -fr .libs/libnonbonded.lax
creating libnonbonded.la
(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la)
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
Making all in gmx_blas
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c  -fPIC -DPIC -o .libs/drot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c  -fPIC -DPIC -o .libs/dswap.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c  -fPIC -DPIC -o .libs/dasum.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c  -fPIC -DPIC -o .libs/dger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c  -fPIC -DPIC -o .libs/dsyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_':
../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_':
../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c  -fPIC -DPIC -o .libs/daxpy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c  -fPIC -DPIC -o .libs/ddot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c  -fPIC -DPIC -o .libs/dnrm2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c  -fPIC -DPIC -o .libs/dscal.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c  -fPIC -DPIC -o .libs/dgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c  -fPIC -DPIC -o .libs/idamax.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c  -fPIC -DPIC -o .libs/dtrsm.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c  -fPIC -DPIC -o .libs/scopy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c  -fPIC -DPIC -o .libs/sasum.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_':
../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_':
../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c  -fPIC -DPIC -o .libs/sger.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_':
../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
                   ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
             ^~~~~
../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa,ncola,nrowb;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c  -fPIC -DPIC -o .libs/srot.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c  -fPIC -DPIC -o .libs/sswap.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c  -fPIC -DPIC -o .libs/saxpy.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c  -fPIC -DPIC -o .libs/ssyr2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c  -fPIC -DPIC -o .libs/snrm2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c  -fPIC -DPIC -o .libs/sdot.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c  -fPIC -DPIC -o .libs/strmm.o
../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_':
../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
     int nrowa;
         ^~~~~
../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, k, info;
                    ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c  -fPIC -DPIC -o .libs/sscal.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c  -fPIC -DPIC -o .libs/strsm.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c  -fPIC -DPIC -o .libs/sgemv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c  -fPIC -DPIC -o .libs/isamax.o
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make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c  -fPIC -DPIC -o .libs/ssymv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_':
../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable]
   int nrowa;
       ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src  -I../../../../include  -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c  -fPIC -DPIC -o .libs/strmv.o
../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_':
../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, ix, jx, kx, info;
                             ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libblas.la  dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o
ranlib .libs/libblas.a
creating libblas.la
(cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
Making all in gmx_lapack
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c  -fPIC -DPIC -o .libs/dlamrg.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c  -fPIC -DPIC -o .libs/dlarnv.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c  -fPIC -DPIC -o .libs/dgetf2.o
../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_':
../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   double one,minusone;
          ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c  -fPIC -DPIC -o .libs/dorgl2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c  -fPIC -DPIC -o .libs/dlasq6.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c  -fPIC -DPIC -o .libs/dlasd0.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c  -fPIC -DPIC -o .libs/dbdsdc.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c  -fPIC -DPIC -o .libs/dlasda.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c  -fPIC -DPIC -o .libs/dormqr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c  -fPIC -DPIC -o .libs/dgetrf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c  -fPIC -DPIC -o .libs/dlange.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c  -fPIC -DPIC -o .libs/dlasd1.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c  -fPIC -DPIC -o .libs/dtrtri.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c  -fPIC -DPIC -o .libs/dlasdq.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c  -fPIC -DPIC -o .libs/dormtr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c  -fPIC -DPIC -o .libs/dlasr.o
../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_':
../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c  -fPIC -DPIC -o .libs/dorglq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c  -fPIC -DPIC -o .libs/dgebd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c  -fPIC -DPIC -o .libs/dlanst.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c  -fPIC -DPIC -o .libs/dbdsqr.o
../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_':
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable]
     double ftmp;
            ^~~~
../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     double sminlo, tolmul;
            ^~~~~~
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../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_':
../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasv2.c  -fPIC -DPIC -o .libs/dlasv2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelqf.c  -fPIC -DPIC -o .libs/dgelqf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarf.c  -fPIC -DPIC -o .libs/dlarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlartg.c  -fPIC -DPIC -o .libs/dlartg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaebz.c  -fPIC -DPIC -o .libs/dlaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd4.c  -fPIC -DPIC -o .libs/dlasd4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormbr.c  -fPIC -DPIC -o .libs/dormbr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqr2.c  -fPIC -DPIC -o .libs/dgeqr2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq2.c  -fPIC -DPIC -o .libs/dlasq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaed6.c  -fPIC -DPIC -o .libs/dlaed6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd6.c  -fPIC -DPIC -o .libs/dlasd6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorml2.c  -fPIC -DPIC -o .libs/dorml2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c  -fPIC -DPIC -o .libs/dlarfb.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlatrd.c  -fPIC -DPIC -o .libs/dlatrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c  -fPIC -DPIC -o .libs/dlas2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormlq.lo ../../../../src/gmxlib/gmx_lapack/dormlq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c  -fPIC -DPIC -o .libs/dormlq.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorg2r.lo ../../../../src/gmxlib/gmx_lapack/dorg2r.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c  -fPIC -DPIC -o .libs/dorg2r.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsytd2.lo ../../../../src/gmxlib/gmx_lapack/dsytd2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c  -fPIC -DPIC -o .libs/dsytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c  -fPIC -DPIC -o .libs/dlasq4.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c  -fPIC -DPIC -o .libs/dlasd7.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c  -fPIC -DPIC -o .libs/dgesdd.o
../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_':
../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c  -fPIC -DPIC -o .libs/dlagts.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c  -fPIC -DPIC -o .libs/dlarft.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c  -fPIC -DPIC -o .libs/dlascl.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c  -fPIC -DPIC -o .libs/dlasd8.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c  -fPIC -DPIC -o .libs/dlasq5.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c  -fPIC -DPIC -o .libs/dorgbr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c  -fPIC -DPIC -o .libs/dormql.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c  -fPIC -DPIC -o .libs/dlaev2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c  -fPIC -DPIC -o .libs/dlasrt2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c  -fPIC -DPIC -o .libs/dsyevr.o
../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_':
../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     double abstll, bignum;
            ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                      ^~~
../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     double eps, vll, vuu, tmp1;
                 ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c  -fPIC -DPIC -o .libs/dlansy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c  -fPIC -DPIC -o .libs/dlar1vx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c  -fPIC -DPIC -o .libs/dsteqr.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c  -fPIC -DPIC -o .libs/dlarrfx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c  -fPIC -DPIC -o .libs/dlarrbx.o
../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_':
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     double right, width, dplus, error;
                                 ^~~~~
../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     double eps, tmp, left;
            ^~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c  -fPIC -DPIC -o .libs/sgetf2.o
../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_':
../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable]
   float one,minusone;
         ^~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c  -fPIC -DPIC -o .libs/slamrg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c  -fPIC -DPIC -o .libs/slarnv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c  -fPIC -DPIC -o .libs/dlarrex.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c  -fPIC -DPIC -o .libs/slasd0.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c  -fPIC -DPIC -o .libs/slasda.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c  -fPIC -DPIC -o .libs/dlarrvx.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c  -fPIC -DPIC -o .libs/sorgl2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c  -fPIC -DPIC -o .libs/slasq6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c  -fPIC -DPIC -o .libs/sormqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c  -fPIC -DPIC -o .libs/sgetrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c  -fPIC -DPIC -o .libs/slange.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c  -fPIC -DPIC -o .libs/slasd1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c  -fPIC -DPIC -o .libs/ssytrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c  -fPIC -DPIC -o .libs/slasdq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c  -fPIC -DPIC -o .libs/sormtr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c  -fPIC -DPIC -o .libs/sgebd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c  -fPIC -DPIC -o .libs/slasr.o
../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_':
../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable]
     int i__, j, info;
                 ^~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c  -fPIC -DPIC -o .libs/slanst.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c  -fPIC -DPIC -o .libs/sbdsqr.o
../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_':
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable]
     float ftmp;
           ^~~~
../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable]
     float sminlo, tolmul;
           ^~~~~~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c  -fPIC -DPIC -o .libs/slasrt.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c  -fPIC -DPIC -o .libs/slabrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c  -fPIC -DPIC -o .libs/sorgqr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c  -fPIC -DPIC -o .libs/sgetrs.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c  -fPIC -DPIC -o .libs/slasd2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slacpy.c  -fPIC -DPIC -o .libs/slacpy.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c  -fPIC -DPIC -o .libs/sgebrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c  -fPIC -DPIC -o .libs/slapy2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c  -fPIC -DPIC -o .libs/slaset.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstebz.c  -fPIC -DPIC -o .libs/sstebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slassq.c  -fPIC -DPIC -o .libs/slassq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2l.c  -fPIC -DPIC -o .libs/sorm2l.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetri.c  -fPIC -DPIC -o .libs/sgetri.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelq2.c  -fPIC -DPIC -o .libs/sgelq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd3.c  -fPIC -DPIC -o .libs/slasd3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstegr.c  -fPIC -DPIC -o .libs/sstegr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slae2.c  -fPIC -DPIC -o .libs/slae2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq1.c  -fPIC -DPIC -o .libs/slasq1.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strti2.c  -fPIC -DPIC -o .libs/strti2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c  -fPIC -DPIC -o .libs/sorm2r.o
../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_':
../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable]
     int i__, i1, i2, i3, ic, jc, mi, ni, nq;
                                          ^~
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelqf.c  -fPIC -DPIC -o .libs/sgelqf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarf.c  -fPIC -DPIC -o .libs/slarf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slartg.c  -fPIC -DPIC -o .libs/slartg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaebz.c  -fPIC -DPIC -o .libs/slaebz.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd5.c  -fPIC -DPIC -o .libs/slasd5.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaswp.c  -fPIC -DPIC -o .libs/slaswp.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd4.c  -fPIC -DPIC -o .libs/slasd4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormbr.c  -fPIC -DPIC -o .libs/sormbr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqr2.c  -fPIC -DPIC -o .libs/sgeqr2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq2.c  -fPIC -DPIC -o .libs/slasq2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c  -fPIC -DPIC -o .libs/ssterf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c  -fPIC -DPIC -o .libs/slasd6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaed6.c  -fPIC -DPIC -o .libs/slaed6.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaruv.c  -fPIC -DPIC -o .libs/slaruv.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorml2.c  -fPIC -DPIC -o .libs/sorml2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c  -fPIC -DPIC -o .libs/sstevr.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq3.c  -fPIC -DPIC -o .libs/slasq3.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slatrd.c  -fPIC -DPIC -o .libs/slatrd.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfb.c  -fPIC -DPIC -o .libs/slarfb.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfg.c  -fPIC -DPIC -o .libs/slarfg.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqrf.c  -fPIC -DPIC -o .libs/sgeqrf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagtf.c  -fPIC -DPIC -o .libs/slagtf.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slas2.c  -fPIC -DPIC -o .libs/slas2.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c  -fPIC -DPIC -o .libs/sorg2r.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormlq.c  -fPIC -DPIC -o .libs/sormlq.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq4.c  -fPIC -DPIC -o .libs/slasq4.o
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 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytd2.c  -fPIC -DPIC -o .libs/ssytd2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c  -fPIC -DPIC -o .libs/slagts.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd7.lo ../../../../src/gmxlib/gmx_lapack/slasd7.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd7.c  -fPIC -DPIC -o .libs/slasd7.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c  -fPIC -DPIC -o .libs/sgesdd.o
../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_':
../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable]
     int wntqas, lquery;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable]
     int minwrk, ldwrku, maxwrk, ldwkvt;
         ^~~~~~
../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable]
     int wntqn, wntqo, wntqs;
                ^~~~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c  -fPIC -DPIC -o .libs/slascl.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarft.c  -fPIC -DPIC -o .libs/slarft.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd8.lo ../../../../src/gmxlib/gmx_lapack/slasd8.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd8.c  -fPIC -DPIC -o .libs/slasd8.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaev2.lo ../../../../src/gmxlib/gmx_lapack/slaev2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaev2.c  -fPIC -DPIC -o .libs/slaev2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormql.lo ../../../../src/gmxlib/gmx_lapack/sormql.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormql.c  -fPIC -DPIC -o .libs/sormql.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgbr.lo ../../../../src/gmxlib/gmx_lapack/sorgbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgbr.c  -fPIC -DPIC -o .libs/sorgbr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c  -fPIC -DPIC -o .libs/slasq5.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c  -fPIC -DPIC -o .libs/slasrt2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c  -fPIC -DPIC -o .libs/slansy.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c  -fPIC -DPIC -o .libs/ssyevr.o
../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_':
../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable]
     float abstll, bignum;
           ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable]
     int iscale, ieeeok, indibl, indifl;
                 ^~~~~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                     ^~~
../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable]
     float eps, vll, vuu, tmp1;
                ^~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c  -fPIC -DPIC -o .libs/slarrfx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c  -fPIC -DPIC -o .libs/ssteqr.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c  -fPIC -DPIC -o .libs/slar1vx.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c  -fPIC -DPIC -o .libs/slarrbx.o
../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_':
../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable]
     float right, width, dplus, error;
                                ^~~~~
../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable]
     float eps, tmp, left;
           ^~~
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c  -fPIC -DPIC -o .libs/ilasrt2.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c  -fPIC -DPIC -o .libs/slarrex.o
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/bin/sh ../../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src  -I../../../../include -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c  -fPIC -DPIC -o .libs/slarrvx.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
/bin/sh ../../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o liblapack.la  dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o
ranlib .libs/liblapack.a
creating liblapack.la
(cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c  -fPIC -DPIC -o .libs/calcgrid.o
../../../src/gmxlib/calcgrid.c: In function 'calc_grid':
../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable]
   real tmp[3];
        ^~~
../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,nmin[DIM];
          ^
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c  -fPIC -DPIC -o .libs/calch.o
../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen':
../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable]
   rvec       kkk;
              ^~~
In file included from ../../../src/gmxlib/calch.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/calch.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c  -fPIC -DPIC -o .libs/atomprop.o
In file included from ../../../src/gmxlib/atomprop.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/atomprop.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c  -fPIC -DPIC -o .libs/copyrite.o
../../../src/gmxlib/copyrite.c: In function 'cool_quote':
../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable]
   char *s,*ptr;
         ^
../../../src/gmxlib/copyrite.c: In function 'please_cite':
../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable]
   int  j,index;
        ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/copyrite.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c  -fPIC -DPIC -o .libs/3dview.o
../../../src/gmxlib/3dview.c: In function 'reset_view':
../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
In file included from ../../../src/gmxlib/3dview.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/3dview.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c  -fPIC -DPIC -o .libs/checkpoint.o
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints':
../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles':
../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable]
     int  nf,dt,i;
                ^
../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header':
../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable]
     int  i;
          ^
../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint':
../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable]
     int  flags_eks,flags_enh,i;
                              ^
../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable]
     int  nppnodes,npmenodes,flag_64bit;
                             ^~~~~~~~~~
../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint':
../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value]
             if (outputfiles[i].filename,outputfiles[i].offset < 0)
                                        ^
../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable]
  char filename[STRLEN];
       ^~~~~~~~
../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable]
     int  fp,i,j;
               ^
../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint':
../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j;
            ^
../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable]
     int  i,j;
          ^
../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable]
     int  indent;
          ^~~~~~
In file included from ../../../src/gmxlib/checkpoint.c:34:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/checkpoint.c:34:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/checkpoint.c:32:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c  -fPIC -DPIC -o .libs/disre.o
../../../src/gmxlib/disre.c: In function 'init_disres':
../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable]
     t_iparams    *ip;
                   ^~
../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable]
     int          fa,nmol,i,npair,np;
                          ^
../../../src/gmxlib/disre.c: In function 'calc_disres_R_6':
../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable]
     ivec        it,jt,dt;
                       ^~
../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                     ^
../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                                  ^~
../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                               ^~
../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable]
     int         fa,res,i,pair,ki,kj,m;
                        ^
../../../src/gmxlib/disre.c: In function 'ta_disres':
../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable]
     ivec        it,jt,dt;
                    ^~
../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable]
     ivec        it,jt,dt;
                 ^~
In file included from ../../../src/gmxlib/disre.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c  -fPIC -DPIC -o .libs/do_fit.o
../../../src/gmxlib/do_fit.c: In function 'calc_fit_R':
../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable]
   int    c,r,n,j,m,i,irot,s;
                  ^
../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim':
../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,j,m,r,c;
          ^
In file included from ../../../src/gmxlib/do_fit.c:44:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/gmxlib/do_fit.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c  -fPIC -DPIC -o .libs/enxio.o
../../../src/gmxlib/enxio.c: In function 'empty_file':
../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int  ret;
        ^~~
../../../src/gmxlib/enxio.c: In function 'get_enx_state':
../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable]
   static char *pcouplmu_nm[] = {
                ^~~~~~~~~~~
At top level:
../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable]
In file included from ../../../src/gmxlib/enxio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/enxio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c  -fPIC -DPIC -o .libs/confio.o
../../../src/gmxlib/confio.c: In function 'read_espresso_conf':
../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
                     ^~~~
../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable]
   int  natoms,level,npar,r,nprop,p,i,m;
        ^~~~~~
../../../src/gmxlib/confio.c: In function 'read_stx_conf':
../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable]
   real       d,r1,r2;
              ^
../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[256];
              ^~~
At top level:
../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function]
 static void get_conf(FILE *in, char *title, int *natoms,
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/confio.c:59:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/confio.c:57:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/confio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/confio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/confio.c: In function 'write_hconf_box':
../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:984:17: note: format string is defined here
      "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n",
                 ^~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
     sprintf(format,"%%%d.%df%%%d.%df%%%d.%df"
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647]
../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647]
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/confio.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c  -fPIC -DPIC -o .libs/ewald_util.o
In file included from ../../../src/gmxlib/ewald_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/ewald_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c  -fPIC -DPIC -o .libs/gmx_fatal.o
../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function]
 static void fatal_error(int f_errno,const char *fmt,...)
             ^~~~~~~~~~~
../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function]
 static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg)
             ^~~~~
In file included from ../../../src/gmxlib/gmx_fatal.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/gmx_fatal.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c  -fPIC -DPIC -o .libs/ffscanf.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c  -fPIC -DPIC -o .libs/ifunc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c  -fPIC -DPIC -o .libs/futil.o
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable]
   char buf[256],*bf,*bufsize=0,*ptr;
                  ^~
../../../src/gmxlib/futil.c: In function 'get_libdir':
../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable]
   char *dir,*ptr,*s,*pdum;
                      ^~~~
../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable]
   char test_file[MAX_PATHBUF];
        ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/futil.c:53:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/futil.c: In function 'ffopen':
../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=]
   sprintf(buf,"gunzip -c < %s",fn);
                            ^~
../../../src/gmxlib/futil.c:329:12:
  ff=gunzip(buf,mode);
            ~~~              
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=]
   sprintf(buf,"uncompress -c < %s",fn);
                                ^~
../../../src/gmxlib/futil.c:324:21:
       ff=uncompress(buf,mode);
                     ~~~         
In file included from /usr/include/stdio.h:862,
                 from ../../../src/gmxlib/futil.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c  -fPIC -DPIC -o .libs/cinvsqrtdata.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c  -fPIC -DPIC -o .libs/gbutil.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/gbutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/gbutil.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/gbutil.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c  -fPIC -DPIC -o .libs/macros.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c  -fPIC -DPIC -o .libs/filenm.o
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable]
  int   i,j,pos;
            ^~~
In file included from ../../../include/wman.h:44,
                 from ../../../src/gmxlib/filenm.c:48:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names':
../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
     sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/filenm.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c  -fPIC -DPIC -o .libs/invblock.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c  -fPIC -DPIC -o .libs/gmxfio.o
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen':
../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable]
  FILE *fp;
        ^~
../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions':
../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable]
  long                     pos;
                           ^~~
../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                                  ^~~~~~
../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable]
  int                      pos_hi,pos_lo;
                           ^~~~~~
../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable]
  int                      i,nfiles,rc,nalloc;
                                    ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c  -fPIC -DPIC -o .libs/sparsematrix.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c  -fPIC -DPIC -o .libs/bondfree.o
../../../src/gmxlib/bondfree.c: In function 'FENE_bonds':
../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable]
   real  dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot;
         ^~
../../../src/gmxlib/bondfree.c: In function 'do_1_thole':
../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable]
   real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff;
                    ^~~~
../../../src/gmxlib/bondfree.c: In function 'posres':
../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable]
   real v,vtot,fm,*fc;
                   ^~
../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable]
   int  i,ai,m,d,type,ki,npbcdim=0;
                      ^~
../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle':
../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable]
   int  i,ai,aj,ak,type,m,t1,t2,t3;
                                ^~
../../../src/gmxlib/bondfree.c: In function 'bonded_tab':
../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable]
   real v,f,dvdl;
          ^
../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable]
   real v,f,dvdl;
        ^
../../../src/gmxlib/bondfree.c: In function 'tab_angles':
../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable]
       real snt,st,sth;
            ^~~
In file included from ../../../src/gmxlib/bondfree.c:56:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/bondfree.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/bondfree.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c  -fPIC -DPIC -o .libs/maths.o
../../../src/gmxlib/maths.c: In function 'gmx_erfc':
../../../src/gmxlib/maths.c:291:31: warning: unused variable 'z4' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                               ^~
../../../src/gmxlib/maths.c:291:28: warning: unused variable 'z2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                            ^~
../../../src/gmxlib/maths.c:291:25: warning: unused variable 's3' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                         ^~
../../../src/gmxlib/maths.c:291:22: warning: unused variable 's2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                      ^~
../../../src/gmxlib/maths.c:291:19: warning: unused variable 's1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                   ^~
../../../src/gmxlib/maths.c:291:16: warning: unused variable 'r2' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
                ^~
../../../src/gmxlib/maths.c:291:13: warning: unused variable 'r1' [-Wunused-variable]
      double r1,r2,s1,s2,s3,z2,z4;
             ^~
../../../src/gmxlib/maths.c:337:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
             if(hx<0&&ix>=0x40180000)
             ^~
../../../src/gmxlib/maths.c:339:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
          R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
          ^
In file included from ../../../src/gmxlib/maths.c:43:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c  -fPIC -DPIC -o .libs/main.o
../../../src/gmxlib/main.c: In function 'par_fn':
../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable]
   int n;
       ^
../../../src/gmxlib/main.c: In function 'gmx_log_open':
../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable]
   int  len,testlen,pid;
            ^~~~~~~
../../../src/gmxlib/main.c: In function 'init_par':
../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable]
   int       i;
             ^
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/gmxlib/main.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/gmxlib/main.c:52:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c  -fPIC -DPIC -o .libs/index.o
../../../src/gmxlib/index.c: In function 'analyse_prot':
../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable]
   int     nra,nnpres,npres;
               ^~~~~~
../../../src/gmxlib/index.c: In function 'init_index':
../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable]
   int      i,j,ng,nread;
                   ^~~~~
In file included from ../../../src/gmxlib/index.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/index.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c  -fPIC -DPIC -o .libs/orires.o
../../../src/gmxlib/orires.c: In function 'init_orires':
../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable]
     int    i,j,d,ex,nmol,nr,*nr_ex;
                          ^~
In file included from ../../../src/gmxlib/orires.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/orires.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/orires.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c  -fPIC -DPIC -o .libs/names.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c  -fPIC -DPIC -o .libs/mtxio.o
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write':
../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read':
../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
     XDR *   xd;
             ^~
In file included from ../../../src/gmxlib/mtxio.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c  -fPIC -DPIC -o .libs/network.o
../../../src/gmxlib/network.c: In function 'gmx_setup':
../../../src/gmxlib/network.c:75:12: warning: unused variable 'flag' [-Wunused-variable]
   int    i,flag;
            ^~~~
../../../src/gmxlib/network.c:75:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,flag;
          ^
../../../src/gmxlib/network.c:73:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/network.c:46:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/network.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c  -fPIC -DPIC -o .libs/mtop_util.o
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind':
../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global':
../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next':
../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable]
     gmx_molblock_t *molb;
                     ^~~~
../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs':
../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable]
     t_atoms *atoms;
              ^~~~~
../../../src/gmxlib/mtop_util.c: In function 'gen_local_top':
../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable]
     int mb,srcnr,destnr,ftype,mt,natoms,nposre_old;
                               ^~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c  -fPIC -DPIC -o .libs/mshift.o
../../../src/gmxlib/mshift.c: In function 'compact_graph':
../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable]
   atom_id *e;
            ^
../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,max_nedge;
         ^
../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist':
../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable]
   int     i,nbtot;
             ^~~~~
In file included from ../../../src/gmxlib/mshift.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/mshift.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mshift.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c  -fPIC -DPIC -o .libs/nrama.o
../../../src/gmxlib/nrama.c: In function 'get_dih2':
../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable]
   int     found,**ff,thisff[NPP];
           ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable]
   int    ePBC;
          ^~~~
At top level:
../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function]
 static void get_dih2(t_xrama *xr,t_functype functype[],
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/nrama.h:45,
                 from ../../../src/gmxlib/nrama.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/gmxlib/nrama.c: In function 'init_rama':
../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr],
                     ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/nrama.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c  -fPIC -DPIC -o .libs/matio.o
../../../src/gmxlib/matio.c: In function 'write_xpm_map_split':
../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable]
   real   r,g,b,fac;
                ^~~
../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable]
   real   r,g,b,fac;
              ^
../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable]
   real   r,g,b,fac;
            ^
../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,g,b,fac;
          ^
../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable]
   int    i,ntot;
          ^
In file included from ../../../src/gmxlib/matio.c:50:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/matio.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c  -fPIC -DPIC -o .libs/mvdata.o
../../../src/gmxlib/mvdata.c: In function 'bc_atoms':
../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_groups':
../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable]
   int dummy;
       ^~~~~
../../../src/gmxlib/mvdata.c: In function 'bc_ffparams':
../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/mvdata.c: In function 'bc_molblock':
../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable]
   bool bAlloc=TRUE;
        ^~~~~~
At top level:
../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function]
 static void bc_idef(const t_commrec *cr,t_idef *idef)
             ^~~~~~~
In file included from ../../../src/gmxlib/mvdata.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/mvdata.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c  -fPIC -DPIC -o .libs/nrnb.o
../../../src/gmxlib/nrnb.c: In function 'pr_load':
../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   for(j=0; (j<eNRNB); j++)
   ^~~
../../../src/gmxlib/nrnb.c:476:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     fprintf(log,"\nDetailed load balancing info in percentage of average\n");
     ^~~~~~~
In file included from ../../../src/gmxlib/nrnb.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c  -fPIC -DPIC -o .libs/nrjac.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/nrjac.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rando.lo ../../../src/gmxlib/rando.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rando.c  -fPIC -DPIC -o .libs/rando.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pargs.lo ../../../src/gmxlib/pargs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pargs.c  -fPIC -DPIC -o .libs/pargs.o
../../../src/gmxlib/pargs.c: In function 'print_pargs':
../../../src/gmxlib/pargs.c:306:26: warning: unused variable 'tmp' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                          ^~~
../../../src/gmxlib/pargs.c:306:16: warning: unused variable 'buf2' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
                ^~~~
../../../src/gmxlib/pargs.c:306:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[32],buf2[256],tmp[256];
        ^~~
In file included from ../../../src/gmxlib/pargs.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pargs.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o random.lo ../../../src/gmxlib/random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/random.c  -fPIC -DPIC -o .libs/random.o
../../../src/gmxlib/random.c: In function 'maxwell_speed':
../../../src/gmxlib/random.c:94:11: warning: unused variable 'i' [-Wunused-variable]
   int     i;
           ^
../../../src/gmxlib/random.c:93:12: warning: unused variable 'dummy' [-Wunused-variable]
   atom_id *dummy;
            ^~~~~
In file included from ../../../src/gmxlib/random.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/random.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o princ.lo ../../../src/gmxlib/princ.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/princ.c  -fPIC -DPIC -o .libs/princ.o
../../../src/gmxlib/princ.c:249:13: warning: 'dump_shit' defined but not used [-Wunused-function]
 static void dump_shit(FILE *out,matrix trans,rvec prcomp,real totmass)
             ^~~~~~~~~
../../../src/gmxlib/princ.c:48:13: warning: 'm_op' defined but not used [-Wunused-function]
 static void m_op(matrix mat,rvec x)
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/princ.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/gmxlib/princ.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/princ.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rbin.lo ../../../src/gmxlib/rbin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rbin.c  -fPIC -DPIC -o .libs/rbin.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rmpbc.lo ../../../src/gmxlib/rmpbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/rmpbc.c  -fPIC -DPIC -o .libs/rmpbc.o
In file included from ../../../src/gmxlib/rmpbc.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/rmpbc.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/rmpbc.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_random.lo ../../../src/gmxlib/gmx_random.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_random.c  -fPIC -DPIC -o .libs/gmx_random.o
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_make_seed':
../../../src/gmxlib/gmx_random.c:146:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
   int ret;
       ^~~
../../../src/gmxlib/gmx_random.c: In function 'gmx_rng_update':
../../../src/gmxlib/gmx_random.c:168:7: warning: variable 'mti' set but not used [-Wunused-but-set-variable]
   int mti,k;
       ^~~
../../../src/gmxlib/gmx_random.c:167:16: warning: unused variable 'lastx' [-Wunused-variable]
   unsigned int lastx,x1,x2,y,*mt;
                ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readinp.lo ../../../src/gmxlib/readinp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/readinp.c  -fPIC -DPIC -o .libs/readinp.o
In file included from ../../../src/gmxlib/readinp.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdbio.lo ../../../src/gmxlib/pdbio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
In file included from ../../../src/gmxlib/pdbio.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/pdbio.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pdbio.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/gmxlib/pdbio.c: In function 'read_pdbfile':
../../../src/gmxlib/pdbio.c:570:23: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
   sprintf(format,"%s%%d",form2);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/gmxlib/pdbio.c:574:27: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=]
       sprintf(format,"%s%%d",form2);
                           ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/gmxlib/pdbio.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o replace.lo ../../../src/gmxlib/replace.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/replace.c  -fPIC -DPIC -o .libs/replace.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sortwater.lo ../../../src/gmxlib/sortwater.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sortwater.c  -fPIC -DPIC -o .libs/sortwater.o
In file included from ../../../src/gmxlib/sortwater.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/sortwater.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o smalloc.lo ../../../src/gmxlib/smalloc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/smalloc.c  -fPIC -DPIC -o .libs/smalloc.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shift_util.lo ../../../src/gmxlib/shift_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/shift_util.c  -fPIC -DPIC -o .libs/shift_util.o
../../../src/gmxlib/shift_util.c: In function 'shift_LRcorrection':
../../../src/gmxlib/shift_util.c:257:10: warning: unused variable 'shift' [-Wunused-variable]
   ivec   shift;
          ^~~~~
../../../src/gmxlib/shift_util.c:253:42: warning: unused variable 'qtot' [-Wunused-variable]
   real   qi,dr,dr2,dr_1,dr_3,fscal,Vexcl,qtot=0;
                                          ^~~~
../../../src/gmxlib/shift_util.c:252:10: warning: unused variable 'isp' [-Wunused-variable]
   double isp=0.564189583547756;
          ^~~
At top level:
../../../src/gmxlib/shift_util.c:370:13: warning: 'rgbset' defined but not used [-Wunused-function]
 static real rgbset(real col)
             ^~~~~~
In file included from ../../../src/gmxlib/shift_util.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/shift_util.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pbc.lo ../../../src/gmxlib/pbc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/pbc.c  -fPIC -DPIC -o .libs/pbc.o
../../../src/gmxlib/pbc.c: In function 'low_set_pbc':
../../../src/gmxlib/pbc.c:272:8: warning: unused variable 'bXY' [-Wunused-variable]
   bool bXY,bUse;
        ^~~
../../../src/gmxlib/pbc.c: In function 'put_atom_in_box':
../../../src/gmxlib/pbc.c:1300:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,d;
       ^
../../../src/gmxlib/pbc.c: In function 'put_atoms_in_box':
../../../src/gmxlib/pbc.c:1314:11: warning: unused variable 'd' [-Wunused-variable]
   int i,m,d;
           ^
../../../src/gmxlib/pbc.c:1314:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,d;
         ^
In file included from ../../../src/gmxlib/pbc.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/pbc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strdb.lo ../../../src/gmxlib/strdb.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/strdb.c  -fPIC -DPIC -o .libs/strdb.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topsort.lo ../../../src/gmxlib/topsort.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/topsort.c  -fPIC -DPIC -o .libs/topsort.o
../../../src/gmxlib/topsort.c: In function 'gmx_sort_ilist_fe':
../../../src/gmxlib/topsort.c:142:10: warning: unused variable 'bPert' [-Wunused-variable]
     bool bPert;
          ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o string2.lo ../../../src/gmxlib/string2.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/string2.c  -fPIC -DPIC -o .libs/string2.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o symtab.lo ../../../src/gmxlib/symtab.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/symtab.c  -fPIC -DPIC -o .libs/symtab.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o statutil.lo ../../../src/gmxlib/statutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/statutil.c  -fPIC -DPIC -o .libs/statutil.o
../../../src/gmxlib/statutil.c: In function 'check_times2':
../../../src/gmxlib/statutil.c:152:8: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
   real margin;
        ^~~~~~
../../../src/gmxlib/statutil.c: In function 'parse_common_args':
../../../src/gmxlib/statutil.c:528:14: warning: unused variable 'newdesc' [-Wunused-variable]
   char *ptr,*newdesc;
              ^~~~~~~
../../../src/gmxlib/statutil.c:528:9: warning: unused variable 'ptr' [-Wunused-variable]
   char *ptr,*newdesc;
         ^~~
../../../src/gmxlib/statutil.c:491:11: warning: unused variable 'npri_pa' [-Wunused-variable]
   t_pargs npri_pa   = { "-npri", FALSE, etINT,   {&npri},
           ^~~~~~~
../../../src/gmxlib/statutil.c:485:27: warning: unused variable 'mantp' [-Wunused-variable]
   static int  nicelevel=0,mantp=0,npri=0,debug_level=0;
                           ^~~~~
At top level:
../../../src/gmxlib/statutil.c:485:27: warning: 'mantp' defined but not used [-Wunused-variable]
../../../src/gmxlib/statutil.c:361:13: warning: 'pdesc' defined but not used [-Wunused-function]
 static void pdesc(char *desc)
             ^~~~~
../../../src/gmxlib/statutil.c:73:14: warning: 'timelabel' defined but not used [-Wunused-variable]
 static char *timelabel     = NULL;
              ^~~~~~~~~
In file included from ../../../src/gmxlib/statutil.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/statutil.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/statutil.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trnio.lo ../../../src/gmxlib/trnio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trnio.c  -fPIC -DPIC -o .libs/trnio.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o viewit.lo ../../../src/gmxlib/viewit.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/viewit.c  -fPIC -DPIC -o .libs/viewit.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/viewit.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wgms.lo ../../../src/gmxlib/wgms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wgms.c  -fPIC -DPIC -o .libs/wgms.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/gmxlib/wgms.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o typedefs.lo ../../../src/gmxlib/typedefs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/typedefs.c  -fPIC -DPIC -o .libs/typedefs.o
../../../src/gmxlib/typedefs.c: In function 'init_block':
../../../src/gmxlib/typedefs.c:64:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_blocka':
../../../src/gmxlib/typedefs.c:74:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_atom':
../../../src/gmxlib/typedefs.c:87:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_top':
../../../src/gmxlib/typedefs.c:135:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'done_top':
../../../src/gmxlib/typedefs.c:284:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/typedefs.c: In function 'init_state':
../../../src/gmxlib/typedefs.c:386:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
In file included from ../../../src/gmxlib/typedefs.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/typedefs.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trxio.lo ../../../src/gmxlib/trxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/trxio.c  -fPIC -DPIC -o .libs/trxio.o
In file included from ../../../src/gmxlib/trxio.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/gmxlib/trxio.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/trxio.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/trxio.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdrd.lo ../../../src/gmxlib/xdrd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xdrd.c  -fPIC -DPIC -o .libs/xdrd.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o writeps.lo ../../../src/gmxlib/writeps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/writeps.c  -fPIC -DPIC -o .libs/writeps.o
In file included from ../../../src/gmxlib/writeps.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xtcio.lo ../../../src/gmxlib/xtcio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xtcio.c  -fPIC -DPIC -o .libs/xtcio.o
In file included from ../../../src/gmxlib/xtcio.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xtcio.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wman.lo ../../../src/gmxlib/wman.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/wman.c  -fPIC -DPIC -o .libs/wman.o
../../../src/gmxlib/wman.c: In function 'mydate':
../../../src/gmxlib/wman.c:168:15: warning: unused variable 'num' [-Wunused-variable]
   const char *num[] = { "01", "02", "03", "04", "05", "06","07", "08", "09" };
               ^~~
../../../src/gmxlib/wman.c: In function 'print_tty_formatted':
../../../src/gmxlib/wman.c:510:16: warning: unused variable 'j' [-Wunused-variable]
   int buflen,i,j;
                ^
../../../src/gmxlib/wman.c: In function 'write_wikiman':
../../../src/gmxlib/wman.c:631:14: warning: unused variable 'tmp2' [-Wunused-variable]
   char *tmp,*tmp2;
              ^~~~
../../../src/gmxlib/wman.c:630:17: warning: unused variable 'link' [-Wunused-variable]
   char buf[256],link[10];
                 ^~~~
../../../src/gmxlib/wman.c: In function 'write_htmlman':
../../../src/gmxlib/wman.c:682:8: warning: unused variable 'link' [-Wunused-variable]
   char link[10],tmp[255];
        ^~~~
../../../src/gmxlib/wman.c: In function 'write_xmlman':
../../../src/gmxlib/wman.c:788:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if (strcmp(link,"???")==0)
       ^~
../../../src/gmxlib/wman.c:790:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
         if (fnm[i].opt[0]=='-') strcpy(opt,fnm[i].opt+1);
         ^~
../../../src/gmxlib/wman.c: In function 'write_py':
../../../src/gmxlib/wman.c:925:8: warning: unused variable 'bHidden' [-Wunused-variable]
   bool bHidden;
        ^~~~~~~
In file included from ../../../src/gmxlib/wman.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xvgr.lo ../../../src/gmxlib/xvgr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/xvgr.c  -fPIC -DPIC -o .libs/xvgr.o
../../../src/gmxlib/xvgr.c: In function 'use_xmgr':
../../../src/gmxlib/xvgr.c:56:8: warning: unused variable 'bXMGR' [-Wunused-variable]
   bool bXMGR;
        ^~~~~
../../../src/gmxlib/xvgr.c: In function 'read_xvg_time':
../../../src/gmxlib/xvgr.c:402:14: warning: unused variable 'tend' [-Wunused-variable]
   double dbl,tend=0;
              ^~~~
In file included from ../../../src/gmxlib/xvgr.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/xvgr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/xvgr.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/xvgr.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tcontrol.lo ../../../src/gmxlib/tcontrol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tcontrol.c  -fPIC -DPIC -o .libs/tcontrol.o
../../../src/gmxlib/tcontrol.c:61:22: warning: 'timeconvert' defined but not used [-Wunused-variable]
 static t_timeconvert timeconvert[] = {
                      ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/tcontrol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dihres.lo ../../../src/gmxlib/dihres.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/dihres.c  -fPIC -DPIC -o .libs/dihres.o
../../../src/gmxlib/dihres.c: In function 'ta_dihres':
../../../src/gmxlib/dihres.c:77:30: warning: unused variable 'dp2' [-Wunused-variable]
   real phi0,phi,ddphi,ddp,dp,dp2,dphi,kfac,cos_phi,sign,d2r,fc;
                              ^~~
../../../src/gmxlib/dihres.c:76:29: warning: unused variable 'typep' [-Wunused-variable]
   int  ai,aj,ak,al,i,k,type,typep,label,power,t1,t2,t3;
                             ^~~~~
In file included from ../../../src/gmxlib/dihres.c:51:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/gmxlib/dihres.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/dihres.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o txtdump.lo ../../../src/gmxlib/txtdump.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/txtdump.c  -fPIC -DPIC -o .libs/txtdump.o
../../../src/gmxlib/txtdump.c: In function 'pr_qm_opts':
../../../src/gmxlib/txtdump.c:339:11: warning: unused variable 'j' [-Wunused-variable]
   int i,m,j;
           ^
../../../src/gmxlib/txtdump.c:339:9: warning: unused variable 'm' [-Wunused-variable]
   int i,m,j;
         ^
../../../src/gmxlib/txtdump.c:339:7: warning: unused variable 'i' [-Wunused-variable]
   int i,m,j;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_ffparams':
../../../src/gmxlib/txtdump.c:906:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_block_title':
../../../src/gmxlib/txtdump.c:950:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_blocka_title':
../../../src/gmxlib/txtdump.c:963:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/txtdump.c: In function 'pr_block':
../../../src/gmxlib/txtdump.c:1016:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,ok,size,start,end;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_atom':
../../../src/gmxlib/txtdump.c:1120:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/gmxlib/txtdump.c: In function 'pr_groups':
../../../src/gmxlib/txtdump.c:1151:9: warning: unused variable 'grpnr' [-Wunused-variable]
     int grpnr[egcNR];
         ^~~~~
At top level:
../../../src/gmxlib/txtdump.c:976:13: warning: 'low_pr_block' defined but not used [-Wunused-function]
 static void low_pr_block(FILE *fp,int indent,const char *title,t_block *block, bool bShowNumbers)
             ^~~~~~~~~~~~
In file included from ../../../src/gmxlib/txtdump.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/txtdump.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cyclecounter.lo ../../../src/gmxlib/gmx_cyclecounter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_cyclecounter.c  -fPIC -DPIC -o .libs/gmx_cyclecounter.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o libxdrf.lo ../../../src/gmxlib/libxdrf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/libxdrf.c  -fPIC -DPIC -o .libs/libxdrf.o
In file included from ../../../include/xdrf.h:41,
                 from ../../../src/gmxlib/libxdrf.c:46:
../../../src/gmxlib/libxdrf.c:145:10: warning: return type defaults to 'int' [-Wimplicit-int]
 F77_FUNC(xdrfshort,XDRFSHORT)(int *xdrid, short *sp, int *ret)
          ^~~~~~~~~
../../src/config.h:28:29: note: in definition of macro 'F77_FUNC'
 #define F77_FUNC(name,NAME) name ## _
                             ^~~~
../../../src/gmxlib/libxdrf.c: In function 'xdr3dfcoord':
../../../src/gmxlib/libxdrf.c:705:9: warning: unused variable 'rc' [-Wunused-variable]
     int rc;
         ^~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_next_frame_start':
../../../src/gmxlib/libxdrf.c:1374:9: warning: unused variable 'inp' [-Wunused-variable]
     int inp;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdr_xtc_seek_time':
../../../src/gmxlib/libxdrf.c:1522:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xtc_get_last_frame_number':
../../../src/gmxlib/libxdrf.c:1691:9: warning: unused variable 'res' [-Wunused-variable]
     int res;
         ^~~
../../../src/gmxlib/libxdrf.c: In function 'xdrfshort_':
../../../src/gmxlib/libxdrf.c:149:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from ../../../include/statutil.h:51,
                 from ../../../src/gmxlib/libxdrf.c:45:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o splitter.lo ../../../src/gmxlib/splitter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/splitter.c  -fPIC -DPIC -o .libs/splitter.o
../../../src/gmxlib/splitter.c: In function 'split_force2':
../../../src/gmxlib/splitter.c:112:17: warning: variable 'type' set but not used [-Wunused-but-set-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
                 ^~~~
../../../src/gmxlib/splitter.c:112:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,k,type,nodeid,nratoms,tnr;
             ^
../../../src/gmxlib/splitter.c: In function 'mk_border':
../../../src/gmxlib/splitter.c:244:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,is,ic,ns,nc,nbor;
              ^
../../../src/gmxlib/splitter.c: In function 'split_blocks':
../../../src/gmxlib/splitter.c:316:11: warning: unused variable 'bSHK' [-Wunused-variable]
   bool    bSHK;
           ^~~~
../../../src/gmxlib/splitter.c:312:19: warning: unused variable 'last_shk' [-Wunused-variable]
   int      nodeid,last_shk,nbor;
                   ^~~~~~~~
../../../src/gmxlib/splitter.c:311:17: warning: unused variable 'ai' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
                 ^~
../../../src/gmxlib/splitter.c:311:14: warning: unused variable 'ii' [-Wunused-variable]
   int      i,ii,ai,b0,b1;
              ^~
../../../src/gmxlib/splitter.c: In function 'merge_sid':
../../../src/gmxlib/splitter.c:556:8: warning: unused variable 'nChanged' [-Wunused-variable]
   int  nChanged;
        ^~~~~~~~
../../../src/gmxlib/splitter.c: In function 'gen_sblocks':
../../../src/gmxlib/splitter.c:654:11: warning: unused variable 'isid' [-Wunused-variable]
   int     isid,nsid;
           ^~~~
../../../src/gmxlib/splitter.c:652:27: warning: unused variable 'n' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                           ^
../../../src/gmxlib/splitter.c:652:20: warning: unused variable 'istart' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                    ^~~~~~
../../../src/gmxlib/splitter.c:652:18: warning: unused variable 'k' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                  ^
../../../src/gmxlib/splitter.c:652:16: warning: unused variable 'j' [-Wunused-variable]
   int     i,i0,j,k,istart,n;
                ^
../../../src/gmxlib/splitter.c: In function 'split_top':
../../../src/gmxlib/splitter.c:755:21: warning: unused variable 'minidx' [-Wunused-variable]
   int minhome,ihome,minidx;
                     ^~~~~~
../../../src/gmxlib/splitter.c:755:15: warning: unused variable 'ihome' [-Wunused-variable]
   int minhome,ihome,minidx;
               ^~~~~
../../../src/gmxlib/splitter.c:755:7: warning: unused variable 'minhome' [-Wunused-variable]
   int minhome,ihome,minidx;
       ^~~~~~~
../../../src/gmxlib/splitter.c:754:14: warning: unused variable 'ia' [-Wunused-variable]
   t_iatom   *ia;
              ^~
../../../src/gmxlib/splitter.c:753:31: warning: unused variable 'nrd' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                               ^~~
../../../src/gmxlib/splitter.c:753:27: warning: unused variable 'nra' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
                           ^~~
../../../src/gmxlib/splitter.c:753:13: warning: unused variable 'nvsite_constr' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
             ^~~~~~~~~~~~~
../../../src/gmxlib/splitter.c:753:7: warning: unused variable 'ftype' [-Wunused-variable]
   int ftype,nvsite_constr,nra,nrd;
       ^~~~~
../../../src/gmxlib/splitter.c:748:59: warning: unused variable 'nodeid' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                           ^~~~~~
../../../src/gmxlib/splitter.c:748:52: warning: unused variable 'bstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                                    ^~~~~~
../../../src/gmxlib/splitter.c:748:47: warning: unused variable 'send' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                               ^~~~
../../../src/gmxlib/splitter.c:748:40: warning: unused variable 'sstart' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                        ^~~~~~
../../../src/gmxlib/splitter.c:748:32: warning: unused variable 'maxatom' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                                ^~~~~~~
../../../src/gmxlib/splitter.c:748:18: warning: unused variable 'i' [-Wunused-variable]
   int     natoms,i,j,k,mj,atom,maxatom,sstart,send,bstart,nodeid;
                  ^
At top level:
../../../src/gmxlib/splitter.c:726:17: warning: 'block2blocka' defined but not used [-Wunused-function]
 static t_blocka block2blocka(t_block *block)
                 ^~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpxio.lo ../../../src/gmxlib/tpxio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/tpxio.c  -fPIC -DPIC -o .libs/tpxio.o
../../../src/gmxlib/tpxio.c: In function 'do_ilist':
../../../src/gmxlib/tpxio.c:987:10: warning: unused variable 'k' [-Wunused-variable]
   int  i,k,idum;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_ffparams':
../../../src/gmxlib/tpxio.c:1008:15: warning: unused variable 'j' [-Wunused-variable]
   int  idum,i,j,k;
               ^
../../../src/gmxlib/tpxio.c: In function 'do_ilists':
../../../src/gmxlib/tpxio.c:1061:8: warning: unused variable 'bDum' [-Wunused-variable]
   bool bDum=TRUE,bClear;
        ^~~~
../../../src/gmxlib/tpxio.c:1060:13: warning: unused variable 'renum' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
             ^~~~~
../../../src/gmxlib/tpxio.c:1060:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k,renum[F_NRE];
       ^
../../../src/gmxlib/tpxio.c: In function 'do_groups':
../../../src/gmxlib/tpxio.c:1276:10: warning: unused variable 'n' [-Wunused-variable]
   int  g,n,i;
          ^
../../../src/gmxlib/tpxio.c: In function 'do_moltype':
../../../src/gmxlib/tpxio.c:1393:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_molblock':
../../../src/gmxlib/tpxio.c:1420:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/gmxlib/tpxio.c: In function 'do_mtop':
../../../src/gmxlib/tpxio.c:1547:14: warning: unused variable 'i' [-Wunused-variable]
   int  mt,mb,i;
              ^
../../../src/gmxlib/tpxio.c: In function 'read_tpx_top':
../../../src/gmxlib/tpxio.c:2005:15: warning: unused variable 'ltop' [-Wunused-variable]
   t_topology *ltop;
               ^~~~
../../../src/gmxlib/tpxio.c: In function 'read_tps_conf':
../../../src/gmxlib/tpxio.c:2035:17: warning: unused variable 'topconv' [-Wunused-variable]
   t_topology   *topconv;
                 ^~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:61:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/gmxlib/tpxio.c:61:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/gmxlib/tpxio.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_arpack.lo ../../../src/gmxlib/gmx_arpack.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_arpack.c  -fPIC -DPIC -o .libs/gmx_arpack.o
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libgmx_mpi_d.la -rpath /usr/lib64 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la gmx_blas/libblas.la        gmx_lapack/liblapack.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/3dview.o .libs/atomprop.o .libs/bondfree.o .libs/calcgrid.o .libs/calch.o .libs/checkpoint.o .libs/confio.o .libs/copyrite.o .libs/disre.o .libs/do_fit.o .libs/enxio.o .libs/ewald_util.o .libs/gmx_fatal.o .libs/ffscanf.o .libs/filenm.o .libs/futil.o .libs/gbutil.o .libs/gmxfio.o .libs/ifunc.o .libs/index.o .libs/cinvsqrtdata.o .libs/invblock.o .libs/macros.o .libs/orires.o .libs/sparsematrix.o .libs/main.o .libs/maths.o .libs/matio.o .libs/mshift.o .libs/mtop_util.o .libs/mtxio.o .libs/mvdata.o .libs/names.o .libs/network.o .libs/nrama.o .libs/nrjac.o .libs/nrnb.o .libs/pargs.o .libs/pbc.o .libs/pdbio.o .libs/princ.o .libs/rando.o .libs/random.o .libs/gmx_random.o .libs/rbin.o .libs/readinp.o .libs/replace.o .libs/rmpbc.o .libs/shift_util.o .libs/sortwater.o .libs/smalloc.o .libs/statutil.o .libs/strdb.o .libs/string2.o .libs/symtab.o .libs/topsort.o .libs/tpxio.o .libs/trnio.o .libs/trxio.o .libs/txtdump.o .libs/typedefs.o .libs/viewit.o .libs/wgms.o .libs/wman.o .libs/writeps.o .libs/xdrd.o .libs/xtcio.o .libs/xvgr.o .libs/libxdrf.o .libs/gmx_arpack.o .libs/dihres.o .libs/tcontrol.o .libs/splitter.o .libs/gmx_cyclecounter.o -Wl,--whole-archive nonbonded/.libs/libnonbonded.a gmx_blas/.libs/libblas.a gmx_lapack/.libs/liblapack.a -Wl,--no-whole-archive  -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lgslcblas -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libgmx_mpi_d.so.5 -o .libs/libgmx_mpi_d.so.5.0.0
(cd .libs && rm -f libgmx_mpi_d.so.5 && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5)
(cd .libs && rm -f libgmx_mpi_d.so && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so)
creating libgmx_mpi_d.la
(cd .libs && rm -f libgmx_mpi_d.la && ln -s ../libgmx_mpi_d.la libgmx_mpi_d.la)
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
Making all in mdlib
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcmu.lo ../../../src/mdlib/calcmu.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcmu.c  -fPIC -DPIC -o .libs/calcmu.o
In file included from ../../../src/mdlib/calcmu.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcmu.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_network.lo ../../../src/mdlib/domdec_network.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_network.c  -fPIC -DPIC -o .libs/domdec_network.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcvir.lo ../../../src/mdlib/calcvir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/calcvir.c  -fPIC -DPIC -o .libs/calcvir.o
../../../src/mdlib/calcvir.c:160:13: warning: 'lo_fcv2' defined but not used [-Wunused-function]
 static void lo_fcv2(int i0,int i1,
             ^~~~~~~
../../../src/mdlib/calcvir.c:47:13: warning: 'dprod1' defined but not used [-Wunused-function]
 static void dprod1(rvec vir,real x,rvec f)
             ^~~~~~
In file included from ../../../src/mdlib/calcvir.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/calcvir.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/calcvir.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_setup.lo ../../../src/mdlib/domdec_setup.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_setup.c  -fPIC -DPIC -o .libs/domdec_setup.o
../../../src/mdlib/domdec_setup.c: In function 'guess_npme':
../../../src/mdlib/domdec_setup.c:83:13: warning: unused variable 'try' [-Wunused-variable]
  t_inputrec try;
             ^~~
../../../src/mdlib/domdec_setup.c:82:16: warning: unused variable 'nky' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
                ^~~
../../../src/mdlib/domdec_setup.c:82:12: warning: unused variable 'nkx' [-Wunused-variable]
  int  npme,nkx,nky,ndiv,*div,*mdiv,ldiv;
            ^~~
../../../src/mdlib/domdec_setup.c: In function 'assign_factors':
../../../src/mdlib/domdec_setup.c:329:13: warning: unused variable 'z' [-Wunused-variable]
     int x,y,z,i;
             ^
../../../src/mdlib/domdec_setup.c: In function 'dd_choose_grid':
../../../src/mdlib/domdec_setup.c:493:19: warning: unused variable 'nky' [-Wunused-variable]
     int  npme,nkx,nky;
                   ^~~
../../../src/mdlib/domdec_setup.c:493:15: warning: unused variable 'nkx' [-Wunused-variable]
     int  npme,nkx,nky;
               ^~~
../../../src/mdlib/domdec_setup.c:493:10: warning: unused variable 'npme' [-Wunused-variable]
     int  npme,nkx,nky;
          ^~~~
In file included from ../../../src/mdlib/domdec_setup.c:32:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_setup.c:32:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec_setup.c:29:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o coupling.lo ../../../src/mdlib/coupling.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/coupling.c  -fPIC -DPIC -o .libs/coupling.o
../../../src/mdlib/coupling.c: In function 'berendsen_pcoupl':
../../../src/mdlib/coupling.c:267:11: warning: unused variable 'ptr' [-Wunused-variable]
   char   *ptr,buf[STRLEN];
           ^~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/coupling.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_con.lo ../../../src/mdlib/domdec_con.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_con.c  -fPIC -DPIC -o .libs/domdec_con.o
../../../src/mdlib/domdec_con.c: In function 'dd_make_local_vsites':
../../../src/mdlib/domdec_con.c:925:25: warning: unused variable 'gat' [-Wunused-variable]
     int  ftype,nral,i,j,gat,a;
                         ^~~
../../../src/mdlib/domdec_con.c: In function 'init_domdec_vsites':
../../../src/mdlib/domdec_con.c:1047:31: warning: unused variable 'dc' [-Wunused-variable]
     gmx_domdec_constraints_t *dc;
                               ^~
In file included from ../../../src/mdlib/domdec_con.c:25:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_con.c:25:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o constr.lo ../../../src/mdlib/constr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/constr.c  -fPIC -DPIC -o .libs/constr.o
../../../src/mdlib/constr.c: In function 'too_many_constraint_warnings':
../../../src/mdlib/constr.c:132:9: warning: unused variable 'abort' [-Wunused-variable]
   char *abort="- aborting to avoid logfile runaway.\n"
         ^~~~~
../../../src/mdlib/constr.c: In function 'constrain':
../../../src/mdlib/constr.c:234:11: warning: unused variable 'ncons' [-Wunused-variable]
   int     ncons,error;
           ^~~~~
../../../src/mdlib/constr.c: In function 'init_constraints':
../../../src/mdlib/constr.c:772:37: warning: unused variable 'natoms' [-Wunused-variable]
   int  ncon,nset,nmol,settle_type,i,natoms,mt,nflexcon;
                                     ^~~~~~
../../../src/mdlib/constr.c: In function 'inter_charge_group_constraints':
../../../src/mdlib/constr.c:903:8: warning: unused variable 'nat' [-Wunused-variable]
   int  nat,*at2cg,cg,a,i;
        ^~~
At top level:
../../../src/mdlib/constr.c:110:12: warning: 'icomp' defined but not used [-Wunused-function]
 static int icomp(const void *p1, const void *p2)
            ^~~~~
In file included from ../../../src/mdlib/constr.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/constr.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/constr.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/constr.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ebin.lo ../../../src/mdlib/ebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ebin.c  -fPIC -DPIC -o .libs/ebin.o
../../../src/mdlib/ebin.c: In function 'add_ebin':
../../../src/mdlib/ebin.c:89:18: warning: unused variable 'sigma' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
                  ^~~~~
../../../src/mdlib/ebin.c:89:14: warning: unused variable 'sum' [-Wunused-variable]
   double   e,sum,sigma,invmm,diff;
              ^~~
In file included from ../../../src/mdlib/ebin.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ebin.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald.lo ../../../src/mdlib/ewald.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ewald.c  -fPIC -DPIC -o .libs/ewald.o
In file included from ../../../src/mdlib/ewald.c:44:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ewald.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ewald.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o init.lo ../../../src/mdlib/init.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/init.c  -fPIC -DPIC -o .libs/init.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/init.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/init.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/init.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/init.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fftgrid.lo ../../../src/mdlib/fftgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/fftgrid.c  -fPIC -DPIC -o .libs/fftgrid.o
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/mdlib/fftgrid.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ghat.lo ../../../src/mdlib/ghat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ghat.c  -fPIC -DPIC -o .libs/ghat.o
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/ghat.c:47:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/ghat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/ghat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdatom.lo ../../../src/mdlib/mdatom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdatom.c  -fPIC -DPIC -o .libs/mdatom.o
../../../src/mdlib/mdatom.c: In function 'init_mdatoms':
../../../src/mdlib/mdatom.c:56:12: warning: unused variable 'ilist' [-Wunused-variable]
   t_ilist *ilist;
            ^~~~~
../../../src/mdlib/mdatom.c:51:17: warning: unused variable 'nmol' [-Wunused-variable]
   int    mb,a,g,nmol;
                 ^~~~
../../../src/mdlib/mdatom.c:51:15: warning: unused variable 'g' [-Wunused-variable]
   int    mb,a,g,nmol;
               ^
../../../src/mdlib/mdatom.c:51:10: warning: unused variable 'mb' [-Wunused-variable]
   int    mb,a,g,nmol;
          ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec_top.lo ../../../src/mdlib/domdec_top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec_top.c  -fPIC -DPIC -o .libs/domdec_top.o
../../../src/mdlib/domdec_top.c: In function 'print_missing_interactions_mb':
../../../src/mdlib/domdec_top.c:113:56: warning: unused variable 'a_gl' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                                        ^~~~
../../../src/mdlib/domdec_top.c:113:38: warning: unused variable 'k' [-Wunused-variable]
     int ftype,ftype_j,nral,i,j_mol,j,k,a0,a0_mol,mol,a,a_gl;
                                      ^
../../../src/mdlib/domdec_top.c: In function 'global_atomnr_to_moltype_ind':
../../../src/mdlib/domdec_top.c:349:7: warning: unused variable 'molb' [-Wunused-variable]
   int molb;
       ^~~~
../../../src/mdlib/domdec_top.c: In function 'count_excls':
../../../src/mdlib/domdec_top.c:364:11: warning: unused variable 'n_inter' [-Wunused-variable]
     int n,n_inter,cg,at0,at1,at,excl,atj;
           ^~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_reverse_top':
../../../src/mdlib/domdec_top.c:611:19: warning: unused variable 'n_recursive_vsite' [-Wunused-variable]
     int mb,natoms,n_recursive_vsite,nexcl,nexcl_icg,a;
                   ^~~~~~~~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'add_vsite':
../../../src/mdlib/domdec_top.c:760:37: warning: unused variable 'iatoms_r' [-Wunused-variable]
     t_iatom tiatoms[1+MAXATOMLIST],*iatoms_r;
                                     ^~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'dd_make_local_top':
../../../src/mdlib/domdec_top.c:1408:10: warning: unused variable 'bUniqueExcl' [-Wunused-variable]
     bool bUniqueExcl,bRCheckMB,bRCheck2B,bRCheckExcl;
          ^~~~~~~~~~~
../../../src/mdlib/domdec_top.c: In function 'check_link':
../../../src/mdlib/domdec_top.c:1590:12: warning: unused variable 'aj' [-Wunused-variable]
     int  k,aj;
            ^~
In file included from ../../../src/mdlib/domdec_top.c:31:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec_top.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edsam.lo ../../../src/mdlib/edsam.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/edsam.c  -fPIC -DPIC -o .libs/edsam.o
../../../src/mdlib/edsam.c:983:13: warning: 'get_flood_energies' defined but not used [-Wunused-function]
 static void get_flood_energies(t_edpar *edi, real Vfl[],int nnames)
             ^~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:964:13: warning: 'get_flood_enx_names' defined but not used [-Wunused-function]
 static void get_flood_enx_names(t_edpar *edi, char** names, int *nnames)  /* get header of energies */
             ^~~~~~~~~~~~~~~~~~~
../../../src/mdlib/edsam.c:459:13: warning: 'dump_mat' defined but not used [-Wunused-function]
 static void dump_mat(FILE* out, int dim, double** mat)
             ^~~~~~~~
../../../src/mdlib/edsam.c:448:13: warning: 'dump_rvec' defined but not used [-Wunused-function]
 static void dump_rvec(FILE *out, int dim, rvec *x)
             ^~~~~~~~~
../../../src/mdlib/edsam.c:439:13: warning: 'dump_rotmat' defined but not used [-Wunused-function]
 static void dump_rotmat(FILE* out,matrix rotmat)
             ^~~~~~~~~~~
../../../src/mdlib/edsam.c:387:13: warning: 'dump_edi' defined but not used [-Wunused-function]
 static void dump_edi(t_edpar *edpars, t_commrec *cr, int nr_edi)
             ^~~~~~~~
../../../src/mdlib/edsam.c:316:13: warning: 'dump_xcoll' defined but not used [-Wunused-function]
 static void dump_xcoll(t_edpar *edi, struct t_do_edsam *buf, t_commrec *cr, int step)
             ^~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/edsam.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/edsam.c:49:
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/edsam.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvxvf.lo ../../../src/mdlib/mvxvf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mvxvf.c  -fPIC -DPIC -o .libs/mvxvf.o
In file included from ../../../src/mdlib/mvxvf.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mvxvf.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o force.lo ../../../src/mdlib/force.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/force.c  -fPIC -DPIC -o .libs/force.o
../../../src/mdlib/force.c: In function 'check_solvent_cg':
../../../src/mdlib/force.c:162:23: warning: unused variable 'excl' [-Wunused-variable]
     const t_blocka *  excl;
                       ^~~~
../../../src/mdlib/force.c: In function 'check_solvent':
../../../src/mdlib/force.c:406:23: warning: variable 'mols' set but not used [-Wunused-but-set-variable]
     const t_block *   mols;
                       ^~~~
../../../src/mdlib/force.c: In function 'set_avcsixtwelve':
../../../src/mdlib/force.c:687:46: warning: unused variable 'n' [-Wunused-variable]
     int    mb,nmol,nmolc,i,j,tpi,tpj,j1,j2,k,n,nexcl,q;
                                              ^
../../../src/mdlib/force.c: In function 'init_forcerec':
../../../src/mdlib/force.c:1048:16: warning: variable 'nbl' set but not used [-Wunused-but-set-variable]
     t_nblists *nbl;
                ^~~
../../../src/mdlib/force.c:1043:26: warning: unused variable 'ngrp' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
                          ^~~~
../../../src/mdlib/force.c:1043:15: warning: unused variable 'j' [-Wunused-variable]
     int     i,j,m,natoms,ngrp,negp_pp,negptable,egi,egj;
               ^
../../../src/mdlib/force.c: In function 'do_force_lowlevel':
../../../src/mdlib/force.c:1540:13: warning: unused variable 'bDoEpot' [-Wunused-variable]
     bool    bDoEpot,bSepDVDL,bSB;
             ^~~~~~~
../../../src/mdlib/force.c:1539:15: warning: unused variable 'nit' [-Wunused-variable]
     int     i,nit,status;
               ^~~
In file included from ../../../src/mdlib/force.c:69:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/mdlib/force.c:64:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/force.c:62:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o perf_est.lo ../../../src/mdlib/perf_est.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/perf_est.c  -fPIC -DPIC -o .libs/perf_est.o
../../../src/mdlib/perf_est.c: In function 'n_bonded_dx':
../../../src/mdlib/perf_est.c:62:2: warning: label 'F_CONNBONDS' defined but not used [-Wunused-label]
  F_CONNBONDS: ndxb = 0; break;
  ^~~~~~~~~~~
../../../src/mdlib/perf_est.c:61:2: warning: label 'F_POSRES' defined but not used [-Wunused-label]
  F_POSRES:    ndxb = 1; break;
  ^~~~~~~~
../../../src/mdlib/perf_est.c: In function 'pme_load_estimate':
../../../src/mdlib/perf_est.c:89:21: warning: unused variable 'fljtab' [-Wunused-variable]
   float fq,fqlj,flj,fljtab,fqljw,fqw,fqspread,ffft,fbond;
                     ^~~~~~
In file included from ../../../src/mdlib/perf_est.c:41:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/perf_est.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdebin.lo ../../../src/mdlib/mdebin.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/mdebin.c  -fPIC -DPIC -o .libs/mdebin.o
../../../src/mdlib/mdebin.c: In function 'print_ebin':
../../../src/mdlib/mdebin.c:530:31: warning: unused variable 'nor' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                               ^~~
../../../src/mdlib/mdebin.c:530:27: warning: unused variable 'ndr' [-Wunused-variable]
   int         i,j,n,ni,nj,ndr,nor;
                           ^~~
In file included from ../../../src/mdlib/mdebin.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/mdebin.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsgrid.lo ../../../src/mdlib/nsgrid.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/nsgrid.c  -fPIC -DPIC -o .libs/nsgrid.o
../../../src/mdlib/nsgrid.c: In function 'init_grid':
../../../src/mdlib/nsgrid.c:181:10: warning: unused variable 'm' [-Wunused-variable]
   int  d,m;
          ^
../../../src/mdlib/nsgrid.c:181:8: warning: unused variable 'd' [-Wunused-variable]
   int  d,m;
        ^
../../../src/mdlib/nsgrid.c: In function 'grid_first':
../../../src/mdlib/nsgrid.c:278:10: warning: unused variable 'cx' [-Wunused-variable]
   ivec   cx;
          ^~
../../../src/mdlib/nsgrid.c: In function 'fill_grid':
../../../src/mdlib/nsgrid.c:421:10: warning: variable 'nrx' set but not used [-Wunused-but-set-variable]
   int    nrx,nry,nrz;
          ^~~
In file included from ../../../src/mdlib/nsgrid.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/nsgrid.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme_pp.lo ../../../src/mdlib/pme_pp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme_pp.c  -fPIC -DPIC -o .libs/pme_pp.o
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/pme_pp.c:49:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme_pp.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme_pp.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pppm.lo ../../../src/mdlib/pppm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pppm.c  -fPIC -DPIC -o .libs/pppm.o
../../../src/mdlib/pppm.c:616:12: warning: 'gmx_pppm_opt_do' defined but not used [-Wunused-function]
 static int gmx_pppm_opt_do(FILE *log,       gmx_pme_t pme,
            ^~~~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pppm.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/mdlib/pppm.c:51:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pppm.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pppm.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o partdec.lo ../../../src/mdlib/partdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/partdec.c  -fPIC -DPIC -o .libs/partdec.o
../../../src/mdlib/partdec.c: In function 'gmx_tx':
../../../src/mdlib/partdec.c:83:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/partdec.c:82:18: warning: unused variable 'flag' [-Wunused-variable]
   int        tag,flag;
                  ^~~~
../../../src/mdlib/partdec.c: In function 'pr_idef_division':
../../../src/mdlib/partdec.c:343:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int i,ftype,nr,nra,m0,m1;
               ^~
../../../src/mdlib/partdec.c: In function 'create_vsitelist':
../../../src/mdlib/partdec.c:477:7: warning: unused variable 'minidx' [-Wunused-variable]
   int minidx;
       ^~~~~~
../../../src/mdlib/partdec.c: In function 'setup_parallel_vsites':
../../../src/mdlib/partdec.c:511:15: warning: unused variable 'k' [-Wunused-variable]
   int i,inr,j,k,ftype;
               ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c  -fPIC -DPIC -o .libs/ns.o
../../../src/mdlib/ns.c: In function 'new_i_nblist':
../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable]
     int    i,k,nri,nshift;
                    ^~~~~~
../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable]
     int    i,k,nri,nshift;
              ^
../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable]
     int    i,k,nri,nshift;
            ^
../../../src/mdlib/ns.c: In function 'put_in_list':
../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                         ^~~
../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable]
     real      qi,qiB,qq,rlj;
                      ^~
../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable]
     int       i0,nicg,len;
                       ^~~
../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable]
     int      i,j,jcg,igid,gid,nbl_ind,ind_ij;
                                       ^~~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_tric':
../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_inner_rect':
../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable]
     t_ns_buf *nsbuf;
               ^~~~~
../../../src/mdlib/ns.c: In function 'ns_simple_core':
../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                      ^~~
../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                                   ^~
../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable]
     int      nsearch,icg,jcg,igid,i0,nri,nn;
                          ^~~
../../../src/mdlib/ns.c: In function 'nsgrid_core':
../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                          ^~~
../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                      ^~~
../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable]
     real    r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2;
                                                  ^~~
../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable]
     rvec    xi,*cgcm,grid_offset;
             ^~
../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable]
     int     cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg;
                                          ^~~
../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable]
     real    gridx,gridy,gridz,grid_x,grid_y,grid_z;
                                             ^~~~~~
../../../src/mdlib/ns.c: In function 'init_ns':
../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable]
     char *ptr;
           ^~~
../../../src/mdlib/ns.c: In function 'search_neighbours':
../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
                       ^~~~~~
../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable]
     int      cg_start,cg_end,start,end;
              ^~~~~~~~
../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable]
     bool     *i_egp_flags;
               ^~~~~~~~~~~
../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable]
     char     *ptr;
               ^~~
../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable]
     int      i,j,m,ngid;
                ^
../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable]
     int      i,j,m,ngid;
              ^
In file included from ../../../src/mdlib/ns.c:54:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/ns.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/mdlib/ns.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pullutil.lo ../../../src/mdlib/pullutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pullutil.c  -fPIC -DPIC -o .libs/pullutil.o
../../../src/mdlib/pullutil.c: In function 'pull_set_pbcatom':
../../../src/mdlib/pullutil.c:85:9: warning: unused variable 'm' [-Wunused-variable]
   int a,m;
         ^
../../../src/mdlib/pullutil.c: In function 'pull_calc_coms':
../../../src/mdlib/pullutil.c:278:9: warning: unused variable 'xx' [-Wunused-variable]
   rvec *xx[2],x_pbc={0,0,0},dx;
         ^~
In file included from ../../../src/mdlib/pullutil.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pullutil.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pullutil.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pull.lo ../../../src/mdlib/pull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pull.c  -fPIC -DPIC -o .libs/pull.o
../../../src/mdlib/pull.c: In function 'apply_forces_grp':
../../../src/mdlib/pull.c:155:20: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int i,ii,m,start,end;
                    ^~~
../../../src/mdlib/pull.c: In function 'do_constraint':
../../../src/mdlib/pull.c:283:22: warning: unused variable 'mass' [-Wunused-variable]
   double lambda, rm, mass, invdt=0;
                      ^~~~
../../../src/mdlib/pull.c:282:10: warning: unused variable 'd0' [-Wunused-variable]
   double d0,inpr;
          ^~
../../../src/mdlib/pull.c: In function 'init_pull_group_index':
../../../src/mdlib/pull.c:779:16: warning: variable 'ga2la' set but not used [-Wunused-but-set-variable]
   gmx_ga2la_t *ga2la=NULL;
                ^~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/pull.c:60:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pull.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pull.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/pull.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/mdlib/pull.c: In function 'open_pull_out.part.3':
../../../src/mdlib/pull.c:134:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(buf,"%d",g);
                   ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/mdlib/pull.c:128:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=]
        sprintf(buf,"%d %s%c",g,(bCoord && g > 0)?"d":"",'X'+m);
                       ^
In file included from /usr/include/stdio.h:862,
                 from ../../../src/mdlib/pull.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o rf_util.lo ../../../src/mdlib/rf_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/rf_util.c  -fPIC -DPIC -o .libs/rf_util.o
../../../src/mdlib/rf_util.c: In function 'RF_excl_correction':
../../../src/mdlib/rf_util.c:59:10: warning: unused variable 'top' [-Wunused-variable]
   int    top,i,j,j1,j2,k,ki;
          ^~~
In file included from ../../../src/mdlib/rf_util.c:46:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/rf_util.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/rf_util.c:42:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c  -fPIC -DPIC -o .libs/minimize.o
../../../src/mdlib/minimize.c: In function 'get_f_norm_max':
../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable]
   real fmax2,fmax2_0,fam;
              ^~~~~~~
../../../src/mdlib/minimize.c: In function 'evaluate_energy':
../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable]
   t_state *state;
            ^~~~~
../../../src/mdlib/minimize.c: In function 'do_cg':
../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable]
   double gpa,gpb,gpc,tmp,sum[2],minstep;
                          ^~~
../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable]
   rvec   *f_global,*p,*sf,*sfm;
                            ^~~
../../../src/mdlib/minimize.c: In function 'do_lbfgs':
../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
   bool   converged,first;
                    ^~~~~
../../../src/mdlib/minimize.c: In function 'do_steep':
../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable]
   real   terminate=0;
          ^~~~~~~~~
../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable]
   real   ustep,dvdlambda,fnormn;
                ^~~~~~~~~
../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable]
   real   stepsize,constepsize;
                   ^~~~~~~~~~~
../../../src/mdlib/minimize.c: In function 'do_nm':
../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable]
     real       fnorm,fmax;
                      ^~~~
../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable]
     real       fnorm,fmax;
                ^~~~~
../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable]
     int        nfmax,count;
                ^~~~~
../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable]
     bool       bNS;
                ^~~
../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
     real       t,lambda,t0,lam0;
                  ^~~~~~
../../../src/mdlib/minimize.c: In function 'do_tpi':
../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable]
   int    i,start,end;
                  ^~~
../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable]
   int    i,start,end;
            ^~~~~
../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable]
   const char *TPI="Test Particle Insertion";
               ^~~
At top level:
../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function]
 static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f)
             ^~~~~~~~
../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function]
 static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2)
             ^~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/minimize.c:83:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/minimize.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/update.h:49,
                 from ../../../src/mdlib/minimize.c:59:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/minimize.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c  -fPIC -DPIC -o .libs/pme.o
../../../src/mdlib/pme.c: In function 'init_atomcomm':
../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable]
     pme_grid_comm_t *pgc;
                      ^~~
../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable]
     int nn,nk;
            ^~
../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable]
     int nn,nk;
         ^~
../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                           ^
../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                         ^
../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
                   ^~~~~
../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
              ^~~~
../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable]
     int lbnd,rbnd,maxlr,b,i;
         ^~~~
../../../src/mdlib/pme.c: In function 'gmx_pme_init':
../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                         ^~~~~
../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
                    ^~~~
../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
               ^~~~
../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
           ^
../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable]
     int b,d,i,lbnd,rbnd,maxlr;
         ^
At top level:
../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function]
 static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid)
             ^~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:81:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/pme.c:71:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/pme.c:70:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/pme.c:70:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shakef.lo ../../../src/mdlib/shakef.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shakef.c  -fPIC -DPIC -o .libs/shakef.o
../../../src/mdlib/shakef.c: In function 'cshake':
../../../src/mdlib/shakef.c:79:19: warning: unused variable 'tjz' [-Wunused-variable]
   real    tjx,tjy,tjz;
                   ^~~
../../../src/mdlib/shakef.c:79:15: warning: unused variable 'tjy' [-Wunused-variable]
   real    tjx,tjy,tjz;
               ^~~
../../../src/mdlib/shakef.c:79:11: warning: unused variable 'tjx' [-Wunused-variable]
   real    tjx,tjy,tjz;
           ^~~
../../../src/mdlib/shakef.c:78:19: warning: unused variable 'tiz' [-Wunused-variable]
   real    tix,tiy,tiz;
                   ^~~
../../../src/mdlib/shakef.c:78:15: warning: unused variable 'tiy' [-Wunused-variable]
   real    tix,tiy,tiz;
               ^~~
../../../src/mdlib/shakef.c:78:11: warning: unused variable 'tix' [-Wunused-variable]
   real    tix,tiy,tiz;
           ^~~
At top level:
../../../src/mdlib/shakef.c:51:13: warning: 'pv' defined but not used [-Wunused-function]
 static void pv(FILE *log,char *s,rvec x)
             ^~
In file included from ../../../src/mdlib/shakef.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shakef.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c  -fPIC -DPIC -o .libs/stat.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/mdlib/stat.c:63:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/mdlib/stat.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/stat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/stat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c  -fPIC -DPIC -o .libs/tgroup.o
../../../src/mdlib/tgroup.c: In function 'init_grptcstat':
../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
At top level:
../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function]
 static void accumulate_ekin(t_commrec *cr,t_grpopts *opts,
             ^~~~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/tgroup.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tgroup.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tgroup.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c  -fPIC -DPIC -o .libs/shellfc.o
../../../src/mdlib/shellfc.c: In function 'predict_shells':
../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
                  ^~~~
../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable]
   real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3;
             ^~~~
../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon':
../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                                ^~
../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable]
   int         i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra;
                   ^~~~
../../../src/mdlib/shellfc.c: In function 'init_adir':
../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable]
   rvec   p,dx;
            ^~
../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable]
   rvec   p,dx;
          ^
../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable]
   real   dt,scale;
             ^~~~~
../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable]
   int    gf,ga,gt;
                ^~
../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable]
   int    gf,ga,gt;
             ^~
../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable]
   int    gf,ga,gt;
          ^~
../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon':
../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable]
   int    nflexcon,g,number_steps,d,Min=0,count=0;
                   ^
../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable]
   char   cbuf[56];
          ^~~~
../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
                   ^~~
../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable]
   real   ftol,xiH,xiS,dum=0;
               ^~~
../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable]
   rvec   dx;
          ^~
In file included from ../../../src/mdlib/shellfc.c:55:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/shellfc.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/shellfc.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/shellfc.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c  -fPIC -DPIC -o .libs/sim_util.o
../../../src/mdlib/sim_util.c: In function 'calc_virial':
../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable]
   tensor virtest;
          ^~~~~~~
../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/mdlib/sim_util.c: In function 'do_force':
../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff':
../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable]
   double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd;
             ^~
../../../src/mdlib/sim_util.c: In function 'finish_run':
../../../src/mdlib/sim_util.c:1134:14: warning: unused variable 'status' [-Wunused-variable]
   MPI_Status status;
              ^~~~~~
../../../src/mdlib/sim_util.c:1133:10: warning: unused variable 'nrnb_buf' [-Wunused-variable]
   double nrnb_buf[4];
          ^~~~~~~~
../../../src/mdlib/sim_util.c:1132:10: warning: unused variable 'sender' [-Wunused-variable]
   int    sender;
          ^~~~~~
../../../src/mdlib/sim_util.c: In function 'init_md':
../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable]
   real tmpt,mod;
             ^~~
../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable]
   real tmpt,mod;
        ^~~~
../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,n;
            ^
../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,n;
          ^
At top level:
../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable]
   static rvec box_size;
               ^~~~~~~~
In file included from ../../../src/mdlib/sim_util.c:78:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/sim_util.c:68:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/sim_util.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/sim_util.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c  -fPIC -DPIC -o .libs/tables.o
../../../src/mdlib/tables.c: In function 'done_tabledata':
../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/mdlib/tables.c: In function 'make_tables':
../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable]
   int         i,j,k,nx,nx0,tabsel[etiNR];
                 ^
../../../src/mdlib/tables.c: In function 'make_bonded_table':
../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
   double start;
          ^~~~~
At top level:
../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function]
 static void splint(real xa[],real ya[],real y2a[],
             ^~~~~~
In file included from ../../../src/mdlib/tables.c:51:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/tables.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/tables.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c  -fPIC -DPIC -o .libs/domdec.o
../../../src/mdlib/domdec.c: In function 'dd_move_cellx':
../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                                         ^
../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable]
     int  d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse;
                   ^~~~
../../../src/mdlib/domdec.c: In function 'dd_collect_vec':
../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable]
     rvec *buf=NULL;
           ^~~
../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                ^
../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
              ^
../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
            ^
../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
          ^
../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable]
     gmx_domdec_master_t *ma;
                          ^~
../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv':
../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable]
     int  n,i,c,a,nalloc=0;
                  ^~~~~~
../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex':
../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                            ^~
../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable]
     ivec coords,coords_pme,nc;
                 ^~~~~~~~~~
../../../src/mdlib/domdec.c: In function 'make_dd_indices':
../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable]
     char *bLocalCG;
           ^~~~~~~~
../../../src/mdlib/domdec.c: In function 'check_bLocalCG':
../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable]
     int ncg,i,ngl,nerr;
         ^~~
../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg':
../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                                 ^~~~~~
../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable]
     int  c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d;
                                              ^~
../../../src/mdlib/domdec.c: In function 'get_load_distribution':
../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable]
     int  d,dim,cid,i,pos;
                ^~~
../../../src/mdlib/domdec.c: In function 'setup_dd_grid':
../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable]
     bool bZYX;
          ^~~~
../../../src/mdlib/domdec.c: In function 'check_dlb_support':
../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label]
         edlbYES:
         ^~~~~~~
../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label]
         edlbAUTO:
         ^~~~~~~~
../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label]
         edlbNO:
         ^~~~~~
../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable]
     gmx_domdec_t *dd;
                   ^~
../../../src/mdlib/domdec.c: In function 'init_domain_decomposition':
../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable]
     int  d,i,j;
              ^
../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable]
     int  d,i,j;
            ^
../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable]
     int  d,i,j;
          ^
../../../src/mdlib/domdec.c: In function 'turn_on_dlb':
../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable]
     char buf[STRLEN];
          ^~~
../../../src/mdlib/domdec.c: In function 'dd_init_bondeds':
../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable]
     int  d;
          ^
../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable]
     bool bBondComm;
          ^~~~~~~~~
../../../src/mdlib/domdec.c: In function 'setup_dd_communication':
../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                                ^~~~~~~
../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                                          ^~~~~
../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                               ^~~
../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                                           ^~~
../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
                       ^~~~~~~~
../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable]
     real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh;
          ^~~~
../../../src/mdlib/domdec.c: In function 'dd_partition_system':
../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable]
     int  i,j,n,cg0=0,ncg_home_old=-1;
            ^
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/domdec.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/mdlib/domdec.c:41:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/mdlib/domdec.c:31:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/domdec.c:31:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c  -fPIC -DPIC -o .libs/vcm.o
../../../src/mdlib/vcm.c: In function 'calc_vcm_grp':
../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                            ^~
../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                         ^~
../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                      ^~
../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                   ^~
../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
                ^~
../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable]
   real   m0,xx,xy,xz,yy,yz,zz;
             ^~
../../../src/mdlib/vcm.c: In function 'do_stopcm_grp':
../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable]
   real tm,tm_1;
           ^~~~
../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable]
   real tm,tm_1;
        ^~
../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable]
   int  i,g,m;
            ^
../../../src/mdlib/vcm.c: In function 'check_cm_grp':
../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable]
   tensor Icm,Tcm;
              ^~~
In file included from ../../../src/mdlib/vcm.c:43:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vcm.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c  -fPIC -DPIC -o .libs/update.o
../../../src/mdlib/update.c: In function 'update':
../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable]
   int              start,homenr,i,n,m,g;
                                       ^
../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable]
   real             dt_1;
                    ^~~~
In file included from ../../../src/mdlib/update.c:62:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/update.h:48,
                 from ../../../src/mdlib/update.c:53:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/update.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/update.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c  -fPIC -DPIC -o .libs/wnblist.o
../../../src/mdlib/wnblist.c: In function 'read_nblist':
../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                           ^~~~
../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                      ^~~~
../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable]
     int  i,ii,j,nnbl,full,icmp,nri,isolv;
                 ^~~~
../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                          ^~
../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable]
     char buf[256],b1[32],b2[32],solv[256],il_code[256];
                   ^~
../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable]
     bool bNL;
          ^~~
In file included from ../../../src/mdlib/wnblist.c:44:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c  -fPIC -DPIC -o .libs/wall.o
../../../src/mdlib/wall.c: In function 'do_walls':
../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable]
   real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF;
                                               ^~~~
../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable]
   real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2];
                                                  ^~~~~
In file included from ../../../src/mdlib/wall.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/wall.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/wall.c:45:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c  -fPIC -DPIC -o .libs/csettle.o
../../../src/mdlib/csettle.c: In function 'xshake':
../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable]
   int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv;
                                       ^~~~
../../../src/mdlib/csettle.c: In function 'csettle':
../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable]
   int i, shakeret, ow1, hw2, hw3;
          ^~~~~~~~
In file included from ../../../src/mdlib/csettle.c:42:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/csettle.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c  -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft':
../../../src/mdlib/gmx_parallel_3dfft.c:283:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft_complex2real':
../../../src/mdlib/gmx_parallel_3dfft.c:484:18: warning: variable 'cdata' set but not used [-Wunused-but-set-variable]
     t_complex *  cdata;
                  ^~~~~
../../../src/mdlib/gmx_parallel_3dfft.c:483:18: warning: variable 'work' set but not used [-Wunused-but-set-variable]
     t_complex *  work;
                  ^~~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:24: warning: variable 'nzc' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                        ^~~
../../../src/mdlib/gmx_parallel_3dfft.c:480:21: warning: variable 'ny' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                     ^~
../../../src/mdlib/gmx_parallel_3dfft.c:480:18: warning: variable 'nx' set but not used [-Wunused-but-set-variable]
     int          nx,ny,nzc;
                  ^~
../../../src/mdlib/gmx_parallel_3dfft.c:479:22: warning: unused variable 'k' [-Wunused-variable]
     int          i,j,k;
                      ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:20: warning: unused variable 'j' [-Wunused-variable]
     int          i,j,k;
                    ^
../../../src/mdlib/gmx_parallel_3dfft.c:479:18: warning: unused variable 'i' [-Wunused-variable]
     int          i,j,k;
                  ^
In file included from ../../../include/gmx_parallel_3dfft.h:30,
                 from ../../../src/mdlib/gmx_parallel_3dfft.c:32:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c  -fPIC -DPIC -o .libs/gmx_wallcycle.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c  -fPIC -DPIC -o .libs/gmx_fft.o
In file included from ../../../src/mdlib/gmx_fft.c:30:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c  -fPIC -DPIC -o .libs/qmmm.o
../../../src/mdlib/qmmm.c: In function 'update_QMMMrec':
../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable]
     *MMatoms;
      ^~~~~~~
../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable]
     QMMMlist_sr,QMMMlist_lr;
                 ^~~~~~~~~~~
At top level:
../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function]
 static int int_comp(const void *a,const void *b){
            ^~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:60:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qmmm.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qmmm.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c  -fPIC -DPIC -o .libs/vsite.o
../../../src/mdlib/vsite.c: In function 'constr_vsiten':
../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable]
   rvec xs,x1,dx;
        ^~
../../../src/mdlib/vsite.c: In function 'construct_vsites':
../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                         ^~~~
../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
                    ^~~~
../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable]
   rvec      reftmp,vtmp,rtmp;
             ^~~~~~
../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable]
   int       i,inc,ii,nra,nr,tp,ftype;
                   ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite2':
../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable]
   real    b;
           ^
../../../src/mdlib/vsite.c: In function 'spread_vsite3FD':
../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable]
   int     svi,sji,skj,d;
                       ^
../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
              ^~
../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
           ^~
../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable]
   real fx,fy,fz,c,invl,fproj,a1;
        ^~
../../../src/mdlib/vsite.c: In function 'spread_vsite_f':
../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable]
   int       i,inc,m,nra,nr,tp,ftype;
                   ^
../../../src/mdlib/vsite.c: In function 'count_intercg_vsite':
../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable]
   int  mb,mt,ftype,nral,i,cg,a;
           ^~
../../../src/mdlib/vsite.c: In function 'get_vsite_pbc':
../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable]
   int  ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0;
                                      ^~~~
../../../src/mdlib/vsite.c: In function 'init_vsite':
../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable]
   int *a2cg,cg;
             ^~
In file included from ../../../src/mdlib/vsite.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/vsite.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c  -fPIC -DPIC -o .libs/gmx_fft_fftw3.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/mdlib/gmx_fft_fftw3.c:27:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c  -fPIC -DPIC -o .libs/qm_gaussian.o
../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian':
../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable]
     *rffile=NULL,*out=NULL;
      ^~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:60:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/qm_gaussian.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c  -fPIC -DPIC -o .libs/clincs.o
../../../src/mdlib/clincs.c: In function 'do_lincsp':
../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                      ^~~
../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                                 ^~~~
../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                             ^~~
../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable]
     real    tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam;
                                        ^~~~
../../../src/mdlib/clincs.c: In function 'set_lincs':
../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable]
     bool     bLocal;
              ^~~~~~
../../../src/mdlib/clincs.c: In function 'constrain_lincs':
../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable]
     int   i,warn,p_imax,error;
                         ^~~~~
At top level:
../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function]
 static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li,
             ^~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/mdlib/clincs.c:50:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/mdlib/clincs.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/mdlib/clincs.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas  -o libmd_mpi_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi_d.so.5 -o .libs/libmd_mpi_d.so.5.0.0
(cd .libs && rm -f libmd_mpi_d.so.5 && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5)
(cd .libs && rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so)
creating libmd_mpi_d.la
(cd .libs && rm -f libmd_mpi_d.la && ln -s ../libmd_mpi_d.la libmd_mpi_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
Making all in kernel
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c  -fPIC -DPIC -o .libs/compute_io.o
../../../src/kernel/compute_io.c: In function 'compute_io':
../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable]
   int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0;
                                                     ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c  -fPIC -DPIC -o .libs/convparm.o
../../../src/kernel/convparm.c: In function 'new_interaction_list':
../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/convparm.c: In function 'convert_params':
../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,maxtypes,mt;
            ^
At top level:
../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function]
 static void new_interaction_list(t_ilist *ilist)
             ^~~~~~~~~~~~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/convparm.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/convparm.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/convparm.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c  -fPIC -DPIC -o .libs/add_par.o
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/add_par.c:46:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/add_par.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c  -fPIC -DPIC -o .libs/gmxcpp.o
../../../src/kernel/gmxcpp.c: In function 'cpp_close_file':
../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c  -fPIC -DPIC -o .libs/gpp_bond_atomtype.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c
../../../src/kernel/grompp.c: In function 'new_status':
../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value]
   mbs;
   ^~~
../../../src/kernel/grompp.c: In function 'read_posres':
../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable]
   bool   bFirst = TRUE;
          ^~~~~~
../../../src/kernel/grompp.c: In function 'gen_posres':
../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j;
         ^
../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable]
   int          natoms,nvsite,comb,mt;
                ^~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/add_par.h:41,
                 from ../../../src/kernel/grompp.c:74:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/grompp.c:60:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/grompp.c:60:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/grompp.c:50:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/grompp.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/grompp.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/kernel/grompp.c: In function 'main':
../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=]
       sprintf(buf,"%d non-matching atom name%s\n"
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/grompp.c:856:14:
   new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm),
              ~~    
../../../src/kernel/grompp.c:381:25: note: format string is defined here
        "atom names from %s will be used\n"
                         ^~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/grompp.c:46:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c  -fPIC -DPIC -o .libs/genhydro.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/genhydro.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/genhydro.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/genhydro.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genhydro.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/genhydro.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c  -fPIC -DPIC -o .libs/h_db.o
../../../src/kernel/h_db.c: In function 'dump_h_db':
../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k;
          ^
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/h_db.h:41,
                 from ../../../src/kernel/h_db.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c  -fPIC -DPIC -o .libs/gen_ad.o
../../../src/kernel/gen_ad.c: In function 'get_impropers':
../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable]
   int       nidih,i,j,k,r,start,ninc,nalloc;
                         ^
../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable]
   t_rbonded  *hbidih;
               ^~~~~~
../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable]
   char      *a0;
              ^~
../../../src/kernel/gen_ad.c: In function 'clean_excls':
../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                          ^
../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e;
                        ^
../../../src/kernel/gen_ad.c: In function 'generate_excls':
../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                            ^
../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                        ^
../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                     ^~
../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                   ^
../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
                ^~
../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
              ^
../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable]
   int i,j,j1,k,k1,l,l1,m,n,e,N;
           ^~
At top level:
../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function]
 static void dump_param(FILE *fp,char *title,int n,t_param ps[])
             ^~~~~~~~~~
../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function]
 static bool ideq(t_param *p1, t_param *p2)
             ^~~~
../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function]
 static bool aeq(t_param *p1, t_param *p2)
             ^~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/gen_ad.c:57:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/gen_ad.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/gen_ad.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_ad.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c  -fPIC -DPIC -o .libs/gpp_atomtype.o
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/gpp_atomtype.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c  -fPIC -DPIC -o .libs/hackblock.o
In file included from ../../../src/kernel/hackblock.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hackblock.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/hackblock.c:42:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c  -fPIC -DPIC -o .libs/pgutil.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c  -fPIC -DPIC -o .libs/hizzie.o
../../../src/kernel/hizzie.c: In function 'set_histp':
../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable]
   real d;
        ^
../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                           ^~~~
../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable]
   int  i,j,nd,na,aj,hisnr,his0,type=-1;
                  ^~
../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable]
   bool *hbond,bHaveH=FALSE;
               ^~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/hizzie.c:48:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hizzie.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/hizzie.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hizzie.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c  -fPIC -DPIC -o .libs/readpull.o
../../../src/kernel/readpull.c: In function 'read_pullparams':
../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable]
   int  ninp,nerror,i,nchar,ndim,nscan,m;
                      ^~~~~
In file included from ../../../src/kernel/readpull.c:54:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readpull.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readpull.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readpull.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/readpull.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c  -fPIC -DPIC -o .libs/pdb2top.o
../../../src/kernel/pdb2top.c: In function 'missing_atoms':
../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable]
   bool bFound, bRet;
                ^~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/pdb2top.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/pdb2top.c:50:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2top.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2top.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c  -fPIC -DPIC -o .libs/sorting.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c  -fPIC -DPIC -o .libs/resall.o
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/resall.c:49:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c  -fPIC -DPIC -o .libs/gen_vsite.o
../../../src/kernel/gen_vsite.c: In function 'read_vsite_database':
../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
                                  ^~~~~~~
../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,n,k,nvsite,ntop,curdir,prevdir;
         ^
../../../src/kernel/gen_vsite.c: In function 'add_vsites':
../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable]
   int i,j,ftype,other,moreheavy,bb;
                                 ^~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring':
../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                                ^~~~
../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                           ^~~~
../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                      ^~~~
../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
                 ^~~~
../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable]
    real xCG,yCG,xCE1,yCE1,xCE2,yCE2;
             ^~~
../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param':
../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
             ^~~~
../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable]
   real b_ij,b_ik;
        ^~~~
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp':
../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable]
   real a,b,c[MAXFORCEPARAM];
            ^
../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
              ^~~~
../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable]
   real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2;
        ^~~~~
../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable]
   real xM[NMASS];
        ^~
../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable]
   real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2;
        ^~~~~~~~~~~
../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable]
   real lineA,lineB,dist;
                    ^~~~
../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable]
   real lineA,lineB,dist;
              ^~~~~
../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable]
   real xcom[NMASS],ycom[NMASS],I,alpha;
                                ^
../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr':
../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable]
   real vmass,vdist,mM;
        ^~~~~
../../../src/kernel/gen_vsite.c: In function 'do_vsites':
../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable]
   int  Hatoms[4],heavies[4],bb;
                             ^~
In file included from ../../../src/kernel/gen_vsite.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gen_vsite.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/gen_vsite.h:43,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/gen_vsite.h:41,
                 from ../../../src/kernel/gen_vsite.c:44:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c  -fPIC -DPIC -o .libs/specbond.o
In file included from ../../../src/kernel/specbond.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/specbond.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2top.h:41,
                 from ../../../src/kernel/specbond.h:40,
                 from ../../../src/kernel/specbond.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/specbond.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
../../../src/kernel/specbond.c: In function 'mk_specbonds':
../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                   ^~
../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr],
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                   ^~
../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647]
    sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1);
                ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../src/kernel/specbond.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c  -fPIC -DPIC -o .libs/tomorse.o
In file included from ../../../src/kernel/tomorse.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c  -fPIC -DPIC -o .libs/topexcl.o
In file included from ../../../include/gpp_nextnb.h:40,
                 from ../../../src/kernel/topexcl.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c  -fPIC -DPIC -o .libs/topdirs.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c  -fPIC -DPIC -o .libs/ter_db.o
../../../src/kernel/ter_db.c: In function 'print_ter_db':
../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable]
   char buf[STRLEN],nname[STRLEN];
                    ^~~~~
../../../src/kernel/ter_db.c: In function 'filter_ter':
../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable]
   char *s,*s2,*c;
            ^~
../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable]
   int i,j,n,len,none_idx;
             ^~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
At top level:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/ter_db.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c  -fPIC -DPIC -o .libs/topshake.o
../../../src/kernel/topshake.c: In function 'make_shake':
../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                   ^
../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable]
   int          nb,b,i,j,ftype,ftype_a;
                ^~
In file included from ../../../src/kernel/topshake.c:46:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/topshake.c:46:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topshake.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c  -fPIC -DPIC -o .libs/xlate.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c
../../../src/kernel/glaasje.c: In function 'do_glas':
../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                        ^~
../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable]
   real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12;
                                     ^~
In file included from ../../../src/kernel/glaasje.c:44:
At top level:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c  -fPIC -DPIC -o .libs/toputil.o
../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function]
 static void print_nbt (FILE *out,char *title,t_atomtype at,
             ^~~~~~~~~
In file included from ../../../src/kernel/topdirs.h:40,
                 from ../../../src/kernel/toputil.c:45:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c
In file included from ../../../src/kernel/gctio.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/gctio.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c  -fPIC -DPIC -o .libs/topio.o
../../../src/kernel/topio.c: In function 'read_topol':
../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
      else
      ^~~~
../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
        break;
        ^~~~~
../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable]
   t_topology *block=NULL;
               ^~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/topio.c:66:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/topio.c:59:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c
../../../src/kernel/ionize.c: In function 'ionize':
../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  if (bL)
  ^~
../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
    if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/
    ^~
In file included from ../../../src/kernel/ionize.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/ionize.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c  -fPIC -DPIC -o .libs/toppush.o
../../../src/kernel/toppush.c: In function 'push_bt':
../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_dihedraltype':
../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable]
   int      i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral;
                                     ^~~~~
../../../src/kernel/toppush.c: In function 'push_nbt':
../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable]
   real    cr[4],sig6;
                 ^~~~
../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable]
   int     i,f,n,ftype,atnr,nrfp;
                       ^~~~
../../../src/kernel/toppush.c: In function 'push_atom_now':
../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable]
   int j,resnr_diff=-1;
       ^
../../../src/kernel/toppush.c: In function 'push_bond':
../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable]
   t_param  param,paramB,*param_defA,*param_defB;
                  ^~~~~~
In file included from ../../../src/kernel/toppush.c:51:
At top level:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/toppush.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.c:48:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
../../../src/kernel/toppush.c: In function 'push_at':
../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
     sprintf(errbuf,"Overriding atomtype %s",type);
                                         ^~  ~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/toppush.c:43:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c  -fPIC -DPIC -o .libs/readir.o
../../../src/kernel/readir.c: In function 'do_index':
../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                      ^~~~
../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                                ^~~~~
../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
                  ^~~~~~~~
../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
           ^~~~~~
../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable]
     nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS;
     ^~~~~
../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                             ^~~~~~~~
../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                     ^~~~~~~
../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                                ^~~~
../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                                        ^~~~~~~
../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable]
   int     nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec,
                              ^~~~~~~~~
../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable]
   real    SAtime;
           ^~~~~~
../../../src/kernel/readir.c: In function 'triple_check':
../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable]
   int  i,m,nmol,npct;
                 ^~~~
In file included from ../../../src/kernel/readir.c:58:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/readir.c:58:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/readir.c:54:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c
../../../src/kernel/xutils.c: In function 'calc_mu_aver':
../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable]
   int     i,start,end;
                   ^~~
../../../src/kernel/xutils.c: In function 'update_forcefield':
../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable]
   bool   bDone;
          ^~~~~
In file included from ../../../src/kernel/xutils.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/xutils.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/xutils.c:44:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c  -fPIC -DPIC -o .libs/tpbcmp.o
../../../src/kernel/tpbcmp.c: In function 'cmp_block':
../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_blocka':
../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable]
   int i,j,k;
           ^
../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable]
   int i,j,k;
         ^
../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j,k;
       ^
../../../src/kernel/tpbcmp.c: In function 'cmp_atom':
../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable]
   char buf[256];
        ^~~
../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable]
   int  i;
        ^
../../../src/kernel/tpbcmp.c: In function 'cmp_top':
../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/tpbcmp.c: In function 'comp_tpx':
../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh[2];
               ^~
../../../src/kernel/tpbcmp.c: In function 'comp_enx':
../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm1=NULL,**enm2=NULL,buf[256];
                                      ^~~
../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable]
   int        in1,in2,nre,nre1,nre2,block;
                                    ^~~~~
At top level:
../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function]
 static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2)
             ^~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/tpbcmp.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c
../../../src/kernel/repl_ex.c: In function 'init_replica_exchange':
../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable]
   real temp,pres;
        ^~~~
../../../src/kernel/repl_ex.c: In function 'replica_exchange':
../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable]
   int  exchange=-1,shift;
                    ^~~~~
At top level:
../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function]
 static void write_debug_x(t_state *state)
             ^~~~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/repl_ex.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/repl_ex.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c
../../../src/kernel/mdrun.c: In function 'main':
../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable]
   FILE     *fplog,*fptest;
                    ^~~~~~
../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable]
   bool     HaveCheckpoint;
            ^~~~~~~~~~~~~~
../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable]
   static bool bCart        = FALSE;
               ^~~~~
At top level:
../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable]
../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable]
   static bool bPPPME       = FALSE;
               ^~~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/mdrun.h:50,
                 from ../../../src/kernel/mdrun.c:49:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/mdrun.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/mdrun.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c
In file included from ../../../src/kernel/protonate.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/protonate.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:42,
                 from ../../../src/kernel/genhydro.h:41,
                 from ../../../src/kernel/protonate.c:47:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/genhydro.h:40,
                 from ../../../src/kernel/protonate.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/protonate.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/protonate.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c
../../../src/kernel/genalg.c: In function 'update_ga':
../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable]
   int   i, j, L, n;      /* counting variables                 */
            ^
In file included from ../../../src/kernel/genalg.c:75:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/genalg.c:75:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/luck.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/luck.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c
../../../src/kernel/do_gct.c: In function 'init_coupling':
../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable]
   int         ati,atj;
                   ^~~
../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable]
   int         ati,atj;
               ^~~
../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable]
   int         i,nc,index,j;
                          ^
../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable]
   int         i,nc,index,j;
                    ^~~~~
../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable]
   int         i,nc,index,j;
                 ^~
../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,nc,index,j;
               ^
../../../src/kernel/do_gct.c: In function 'do_coupling':
../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable]
   bool        bTest,bPrint;
               ^~~~~
../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                           ^~~~
../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable]
   real        Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12;
                                                       ^~~
../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                                ^~~
../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                            ^~~
../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable]
   real        ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind;
                        ^~~
../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable]
   real        deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf;
                                                            ^~~~
At top level:
../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function]
 static void dump_fm(FILE *fp,int n,real f[],char *s)
             ^~~~~~~
In file included from ../../../src/kernel/do_gct.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../include/pull.h:44,
                 from ../../../include/mdrun.h:56,
                 from ../../../src/kernel/do_gct.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/xmdrun.h:50,
                 from ../../../src/kernel/do_gct.c:41:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c
../../../src/kernel/tpbconv.c: In function 'main':
../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable]
   int nerror = 0;
       ^~~~~~
../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable]
   t_gromppopts *gopts;
                 ^~~~~
../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable]
   t_inputrec   *ir,*irnew=NULL;
                     ^~~~~
../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable]
   int          i,frame,run_step,nsteps_org;
                                 ^~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/tpbconv.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:54:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/tpbconv.c:52:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/readir.h:43,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/readir.h:42,
                 from ../../../src/kernel/tpbconv.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c  -fPIC -DPIC -o .libs/vsite_parm.o
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds':
../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                                                              ^~~~~~~~~
../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                              ^
../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype;
                      ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles':
../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                                                   ^~~~~~~~~
../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                        ^
../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable]
   int      i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype;
                ^~~~~
../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs':
../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                            ^
../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
                    ^~~~~
../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable]
   int      ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral;
            ^~~~~
In file included from ../../../src/kernel/vsite_parm.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/vsite_parm.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/resall.h:41,
                 from ../../../src/kernel/vsite_parm.c:45:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/vsite_parm.h:41,
                 from ../../../src/kernel/vsite_parm.c:43:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c
../../../src/kernel/gmxdump.c: In function 'list_tpx':
../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value]
       if (state,tpx.bF) {
                ^
../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable]
   int         step,fp,indent,i,j,**gcount,atot;
                    ^~
../../../src/kernel/gmxdump.c: In function 'list_ene':
../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,ndr;
                 ^~~
At top level:
../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function]
 static void dump_top(FILE *fp,t_topology *top,char *tpr)
             ^~~~~~~~
In file included from ../../../src/kernel/gmxdump.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxdump.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c
../../../src/kernel/nm2type.c: In function 'rd_nm2type':
../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable]
   double    qq,mm,*blen;
                    ^~~~
../../../src/kernel/nm2type.c: In function 'nm2type':
../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable]
   int *bbb,*n_mask,*m_mask,**match,**quality;
                                      ^~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/nm2type.c:59:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/nm2type.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/nm2type.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/nm2type.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/nm2type.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/nm2type.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c
../../../src/kernel/x2top.c: In function 'set_cgnr':
../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable]
   double qt=0,mt=0;
               ^~
../../../src/kernel/x2top.c: In function 'set_force_const':
../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
../../../src/kernel/x2top.c: In function 'main':
../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable]
   real       cutoff,qtot,mtot;
              ^~~~~~
../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                        ^~~~
../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                      ^
../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                    ^
../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                  ^
../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
                ^
../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,k,l,m,ndih;
              ^
../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable]
   int        nres;         /* number of molecules? */
              ^~~~
At top level:
../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable]
   static real scale = 1.1, kb = 4e5,kt = 400,kp = 5;
               ^~~~~
../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function]
 static int get_atype(char *nm)
            ^~~~~~~~~
../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function]
 static real set_x_blen(real scale)
             ^~~~~~~~~~
In file included from ../../../src/kernel/topio.h:41,
                 from ../../../src/kernel/gen_ad.h:42,
                 from ../../../src/kernel/x2top.c:60:
../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable]
 static const char *couple_lam[ecouplamNR+1]    = {
                    ^~~~~~~~~~
../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable]
 static const char *constraints[eshNR+1]    = {
                    ^~~~~~~~~~~
In file included from ../../../src/kernel/hackblock.h:41,
                 from ../../../src/kernel/pdb2top.h:43,
                 from ../../../src/kernel/x2top.c:59:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/toppush.h:41,
                 from ../../../src/kernel/x2top.c:58:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/x2top.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/x2top.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/x2top.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/kernel/x2top.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c
../../../src/kernel/gmxcheck.c: In function 'tpx2system':
../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable]
   int i,nmol,nvsite=0;
       ^
../../../src/kernel/gmxcheck.c: In function 'tpx2methods':
../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable]
   int         i,step;
               ^
../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable]
   t_tpxheader sh;
               ^~
../../../src/kernel/gmxcheck.c: In function 'chk_bonds':
../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable]
   real b0,blen,deviation,devtot;
                          ^~~~~~
../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable]
   int  ftype,i,k,ai,aj,type;
              ^
../../../src/kernel/gmxcheck.c: In function 'chk_trj':
../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable]
   bool         bShowTimestep=TRUE,bOK,newline=FALSE;
                                   ^~~
../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                                        ^~~~
../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                       ^~
../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable]
   real         rdum,t,tt,old_t1,old_t2,prec;
                ^~~~
../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable]
   off_t        fpos;
                ^~~~
../../../src/kernel/gmxcheck.c: In function 'chk_ndx':
../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/kernel/gmxcheck.c: In function 'chk_enx':
../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable]
   int        in,nre,fnr,ndr;
                         ^~~
In file included from ../../../src/kernel/gmxcheck.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/gmxcheck.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/gmxcheck.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/gmxcheck.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o libgmxpreprocess_mpi_d.la  add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
ar cru .libs/libgmxpreprocess_mpi_d.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o
ranlib .libs/libgmxpreprocess_mpi_d.a
creating libgmxpreprocess_mpi_d.la
(cd .libs && rm -f libgmxpreprocess_mpi_d.la && ln -s ../libgmxpreprocess_mpi_d.la libgmxpreprocess_mpi_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c
../../../src/kernel/md.c: In function 'mdrunner':
../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable]
   char       *gro;
               ^~~
../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                                             ^~~~~~
../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
                ^
../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,m,nChargePerturbed=-1,status,nalloc;
              ^
../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable]
   real       tmpr1,tmpr2;
                    ^~~~~
../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable]
   real       tmpr1,tmpr2;
              ^~~~~
../../../src/kernel/md.c: In function 'do_md':
../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable]
   char        *grpname;
                ^~~~~~~
../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable]
   real        timestep=0;
               ^~~~~~~~
In file included from ../../../include/pppm.h:46,
                 from ../../../src/kernel/md.c:69:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/md.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/md.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/md.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c
../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function]
 static const char *get_cystp(int resnr)
                    ^~~~~~~~~
In file included from ../../../src/kernel/toputil.h:40,
                 from ../../../src/kernel/pdb2gmx.c:55:
../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable]
 static char *ds[d_maxdir+1] = {
              ^~
In file included from ../../../src/kernel/pdb2gmx.c:54:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/kernel/pdb2gmx.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/kernel/pdb2gmx.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/kernel/pdb2gmx.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/kernel/pdb2gmx.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c: In function 'main':
../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(rtp,"%s.rtp",forcefield);
                  ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=]
       sprintf(molname,"Protein%s",suffix);
                               ^~  ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  sprintf(posre_fn,"%s_pr.itp",buf_fn);
                      ^~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/kernel/pdb2gmx.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxcheck gmxcheck.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxcheck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o luck luck.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating luck
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o grompp grompp.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating grompp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating mdrun
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o gmxdump gmxdump.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating gmxdump
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o protonate protonate.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating protonate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o tpbconv tpbconv.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating tpbconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o x2top x2top.o nm2type.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating x2top
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o pdb2gmx pdb2gmx.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o  ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath 
creating pdb2gmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
Making all in tools
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c  -fPIC -DPIC -o .libs/pp2shift.o
In file included from ../../../src/tools/pp2shift.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/pp2shift.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c
../../../src/tools/do_dssp.c: In function 'main':
../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,natoms,nframe=0;
                ^
In file included from ../../../src/tools/do_dssp.c:49:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/do_dssp.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/do_dssp.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c  -fPIC -DPIC -o .libs/dlist.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/dlist.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c  -fPIC -DPIC -o .libs/polynomials.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/polynomials.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c
mkdir .libs
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c  -fPIC -DPIC -o .libs/expfit.o
In file included from ../../../src/tools/expfit.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/expfit.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/expfit.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c  -fPIC -DPIC -o .libs/levenmar.o
../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function]
 static void free_convert_matrix(real **b, int nrl)
             ^~~~~~~~~~~~~~~~~~~
../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function]
 static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch)
               ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function]
 static void free_submatrix(real **b, int nrl)
             ^~~~~~~~~~~~~~
../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function]
 static void free_imatrix(int **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function]
 static void free_dmatrix(double **m, int nrl, int nrh, int ncl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function]
 static void free_dvector(int *v, int nl)
             ^~~~~~~~~~~~
../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function]
 static real **submatrix(real **a, int oldrl, int oldrh, int oldcl,
               ^~~~~~~~~
../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function]
 static int **imatrix1(int nrl, int nrh, int ncl, int nch)
              ^~~~~~~~
../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function]
 static double **dmatrix(int nrl, int nrh, int ncl, int nch)
                 ^~~~~~~
../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function]
 static double *dvector(int nl, int nh)
                ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c  -fPIC -DPIC -o .libs/lsq.o
In file included from ../../../src/tools/lsq.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/lsq.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/lsq.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c  -fPIC -DPIC -o .libs/eigio.o
In file included from ../../../src/tools/eigio.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/eigio.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c  -fPIC -DPIC -o .libs/autocorr.o
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/autocorr.c:53:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/autocorr.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/autocorr.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/autocorr.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c  -fPIC -DPIC -o .libs/anadih.o
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadih.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadih.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadih.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c  -fPIC -DPIC -o .libs/eigensolver.o
../../../src/tools/eigensolver.c: In function 'eigensolver':
../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable]
     int     il,iu,m,iw0,info;
                ^~
../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable]
     int     il,iu,m,iw0,info;
             ^~
../../../src/tools/eigensolver.c: In function 'sparse_eigensolver':
../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=0;i<11;i++)
     ^~~
../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  iparam[0] = 1;       /* Don't use explicit shifts */
  ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c  -fPIC -DPIC -o .libs/cmat.o
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c  -fPIC -DPIC -o .libs/fitahx.o
In file included from ../../../src/tools/fitahx.c:41:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/fitahx.c:41:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c  -fPIC -DPIC -o .libs/hxprops.o
../../../src/tools/hxprops.c: In function 'ellipticity':
../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable]
   const real Xi=1.0;
              ^~
In file included from ../../../src/tools/hxprops.c:46:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/hxprops.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c  -fPIC -DPIC -o .libs/gmx_bond.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bond.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_bond.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bond.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bond.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c  -fPIC -DPIC -o .libs/gmx_angle.o
../../../src/tools/gmx_angle.c: In function 'gmx_angle':
../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable]
   char       buf[80];
              ^~~
../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                                      ^~~~~~~~
../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
                ^~
../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable]
   real       t,aa,aver,aver2,aversig,fraction;       /* fraction trans dihedrals */
              ^
../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                                       ^~~~~~
../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                       ^~~~
../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                                ^~~~~~
../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable]
   int        i,j,total,nangles,natoms,nat2,first,last,angind;
                  ^~~~~
../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable]
   real       maxang,Jc,S2,norm_fac,maxstat;
                     ^~
../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,isize;
              ^~~~~~
../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable]
   real       tmp,dt;
              ^~~
In file included from ../../../src/tools/gmx_angle.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_angle.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_angle.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_angle.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c  -fPIC -DPIC -o .libs/gmx_bundle.o
../../../src/tools/gmx_bundle.c: In function 'dump_axes':
../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable]
   int         i,end;
                 ^~~
../../../src/tools/gmx_bundle.c: In function 'gmx_bundle':
../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,gnx[MAX_ENDS];
                ^
../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable]
   int        natoms;
              ^~~~~~
../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl;
               ^~~
In file included from ../../../src/tools/gmx_bundle.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_bundle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_bundle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_bundle.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c  -fPIC -DPIC -o .libs/gmx_analyze.o
../../../src/tools/gmx_analyze.c: In function 'luzar_correl':
../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable]
   real weight,d2;
        ^~~~~~
../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable]
   const real tol = 1e-8;
              ^~~
../../../src/tools/gmx_analyze.c: In function 'gmx_analyze':
../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable]
   static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE;
                                                               ^~~~~~~~~~~
At top level:
../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable]
../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function]
 static real anal_ee(real *parm,real T,real t)
             ^~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_analyze.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_analyze.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_analyze.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c  -fPIC -DPIC -o .libs/nsc.o
../../../src/tools/nsc.c: In function 'make_unsp':
../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
   ^~
../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
   if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk);
                             ^~
../../../src/tools/nsc.c: In function 'nsc_dclm_pbc':
../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable]
     int    ix,iy,iz,m;
                     ^
../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable]
   int   iat_xx,jat_xx;
                ^~~~~~
In file included from ../../../src/tools/nsc.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/nsc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c  -fPIC -DPIC -o .libs/gmx_anaeig.o
../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter':
../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[256];
          ^~~
../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable]
   int    i,j,k,m;
                ^
../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,m;
              ^
../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,m;
            ^
../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable]
   int    *indx;
           ^~~~
../../../src/tools/gmx_anaeig.c: In function 'compare':
../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable]
   int    n,nrow;
            ^~~~
../../../src/tools/gmx_anaeig.c: In function 'rmsf':
../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable]
   int   nrow,g,v,i;
         ^~~~
../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig':
../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
     if (i!=natoms)
     ^~
../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
       printf("\n");
       ^~~~~~
../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable]
   int        natoms,step;
                     ^~~~
../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
                                          ^~~~~~
../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable]
   real       xid,totmass,*sqrtm,*w_rls,t,lambda;
              ^~~
../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
                  ^~~~~
../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable]
   rvec       *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL;
               ^
../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable]
   FILE       *out;
               ^~~
In file included from ../../../src/tools/gmx_anaeig.c:53:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_anaeig.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_anaeig.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_anaeig.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c  -fPIC -DPIC -o .libs/gmx_confrms.o
../../../src/tools/gmx_confrms.c: In function 'find_matching_names':
../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                                   ^~~~~
../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                           ^~~~~
../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
                  ^~~~~~
../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable]
   char *resnm1, *resnm2, *atnm1, *atnm2;
         ^~~~~~
../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable]
   int r,rnr1, rnr2, prnr1, prnr2;
       ^
../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable]
   int i, i1, i2, ii1, ii2, m1, m2;
       ^
../../../src/tools/gmx_confrms.c: In function 'gmx_confrms':
../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable]
   real    tmas1,tmas2;
                 ^~~~~
../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable]
   real    tmas1,tmas2;
           ^~~~~
../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,m;
             ^
In file included from ../../../src/tools/gmx_confrms.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_confrms.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_confrms.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_confrms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_confrms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c  -fPIC -DPIC -o .libs/gmx_densmap.o
In file included from ../../../src/tools/gmx_densmap.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_densmap.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_densmap.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_densmap.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c  -fPIC -DPIC -o .libs/gmx_chi.o
../../../src/tools/gmx_chi.c: In function 'histogramming':
../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable]
   int     ***his_aa,**his_aa1,*histmp;
                       ^~~~~~~
../../../src/tools/gmx_chi.c: In function 'print_transitions':
../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable]
   int  nh[edMax];
        ^~
../../../src/tools/gmx_chi.c: In function 'gmx_chi':
../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,**chi_lookup,*xity;
                ^
In file included from ../../../src/tools/gmx_chi.c:59:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_chi.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_chi.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_chi.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1':
../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
      sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]);
                              ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_chi.c:39:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c  -fPIC -DPIC -o .libs/gmx_density.o
../../../src/tools/gmx_density.c: In function 'calc_density':
../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable]
   char *buf;             /* for tmp. keeping atomname */
         ^~~
../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,               /* loop indices */
         ^
../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../src/tools/gmx_density.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_density.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_density.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_density.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c  -fPIC -DPIC -o .libs/gmx_current.o
../../../src/tools/gmx_current.c: In function 'calc_mjdsp':
../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable]
  real rfr;
       ^~~
../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable]
  real  rtmp;
        ^~~~
../../../src/tools/gmx_current.c: In function 'dielectric':
../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable]
   real rest=0.0;
        ^~~~
../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable]
   real qtmp;
        ^~~~
../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable]
   real dm_s,dm_d;
             ^~~~
../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable]
   real dm_s,dm_d;
        ^~~~
../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable]
   real rfr=0.0;
        ^~~
../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                                 ^~~~~~
../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable]
   int  valloc,nalloc,nfr,nvfr,m,itrust=0;
                               ^
../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable]
   int   i,j,k,l,f;
                 ^
../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable]
   int   i,j,k,l,f;
               ^
../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable]
   int   i,j,k,l,f;
             ^
../../../src/tools/gmx_current.c: In function 'gmx_current':
../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable]
   FILE       *tfile=NULL;
               ^~~~~
../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable]
   FILE       *outi=NULL;
               ^~~~
../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable]
   real       lambda;
              ^~~~~~
../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable]
   real      t;
             ^
../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable]
   int        step;
              ^~~~
../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable]
   int       i,j,k=0,l;
                     ^
../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable]
   int       i,j,k=0,l;
                 ^
../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,k=0,l;
               ^
../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable]
   int      natoms;
            ^~~~~~
../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable]
   bool   bNEU;
          ^~~~
../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
   bool      bTop;
             ^~~~
In file included from ../../../src/tools/gmx_current.c:44:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_current.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_current.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_current.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c  -fPIC -DPIC -o .libs/gmx_covar.o
../../../src/tools/gmx_covar.c: In function 'gmx_covar':
../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,nat,ndim,count,nframes0,nframes,nlevels;
                              ^~~~~
../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable]
   int        ntopatoms,step;
                        ^~~~
../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable]
   int        ntopatoms,step;
              ^~~~~~~~~
../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
In file included from ../../../src/tools/gmx_covar.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_covar.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_covar.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_covar.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c  -fPIC -DPIC -o .libs/gmx_dih.o
../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function]
 static void dump_dih(int nframes,char *title,real time[],real dih[])
             ^~~~~~~~
In file included from ../../../src/tools/gmx_dih.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dih.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dih.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dih.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_dih.c: In function 'gmx_dih':
../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
     sprintf(buf,"dih-%d",i);
                      ^~
../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647]
     sprintf(buf,"dih-%d",i);
                 ^~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_dih.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c  -fPIC -DPIC -o .libs/gmx_cluster.o
../../../src/tools/gmx_cluster.c: In function 'mark_clusters':
../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable]
   int i,j,v;
           ^
../../../src/tools/gmx_cluster.c: In function 'gmx_cluster':
../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
       for(i=0; (i<nf); i++)
       ^~~
../../../src/tools/gmx_cluster.c:1343:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
           ffclose(fp);
           ^~~~~~~
In file included from ../../../src/tools/gmx_cluster.c:49:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_cluster.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_cluster.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_cluster.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c  -fPIC -DPIC -o .libs/gmx_dielectric.o
../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin':
../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable]
   real dt,dtt;
           ^~~
../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable]
   real dt,dtt;
        ^~
In file included from ../../../src/tools/gmx_dielectric.c:53:
At top level:
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_dielectric.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_dielectric.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dielectric.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c  -fPIC -DPIC -o .libs/gmx_spatial.o
../../../src/tools/gmx_spatial.c: In function 'gmx_spatial':
../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable]
   rvec       *xtop,*shx[26];
                     ^~~
../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable]
   static bool bSHIFT=FALSE;
               ^~~~~~
At top level:
../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_spatial.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_spatial.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spatial.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spatial.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c  -fPIC -DPIC -o .libs/gmx_dyndom.o
../../../src/tools/gmx_dyndom.c: In function 'rot_conf':
../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable]
   int      i,j,ai;
              ^
../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                           ^~~~~~
../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                                    ^~~~~~
../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable]
   mat4     temp1,temp2,temp3,temp4,temp21,temp43;
                              ^~~~~
../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                                 ^~
../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                          ^~~~~~
../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable]
   mat4     Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx;
                                      ^~~
../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable]
   rvec     arrow,center,xcm;
                  ^~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:47:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dyndom.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_dyndom.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dyndom.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c  -fPIC -DPIC -o .libs/gmx_dist.o
../../../src/tools/gmx_dist.c: In function 'gmx_dist':
../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable]
   FILE    *fp=NULL,*fplt=NULL;
                     ^~~~
../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable]
   atom_id aid;
           ^~~
../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable]
   rvec *x=NULL,*v=NULL,dx;
                 ^
In file included from ../../../src/tools/gmx_dist.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dist.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_dist.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c  -fPIC -DPIC -o .libs/gmx_kinetics.o
../../../src/tools/gmx_kinetics.c: In function 'epnm':
../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable]
   int    nn,ni,ii;
                ^~
../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable]
   int    nn,ni,ii;
             ^~
../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable]
   int    nn,ni,ii;
          ^~
../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters':
../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable]
   real rhs,tauf,taub,fff,DG;
        ^~~
At top level:
../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
               ^~~
../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                       ^~~~
../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable]
   static char buf[32],from[8],to[8];
                               ^~
../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function]
 static char *itoa(int i)
              ^~~~
In file included from ../../../src/tools/gmx_kinetics.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_kinetics.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_kinetics.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_kinetics.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_disre.lo ../../../src/tools/gmx_disre.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_disre.c  -fPIC -DPIC -o .libs/gmx_disre.o
../../../src/tools/gmx_disre.c: In function 'check_viol':
../../../src/tools/gmx_disre.c:144:11: warning: variable 'ener' set but not used [-Wunused-but-set-variable]
   real    ener,rt,mviol,tviol,viol,lam,dvdl,drt;
           ^~~~
../../../src/tools/gmx_disre.c: In function 'dump_disre_matrix':
../../../src/tools/gmx_disre.c:449:12: warning: unused variable 'iii' [-Wunused-variable]
   int      iii,i,j,nra,nratoms,tp,ri,rj,index,nlabel,label;
            ^~~
In file included from ../../../src/tools/gmx_disre.c:57:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:54:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_disre.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_disre.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_disre.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_disre.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c  -fPIC -DPIC -o .libs/gmx_lie.o
In file included from ../../../src/tools/gmx_lie.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_lie.c:51:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_lie.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_lie.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_enemat.lo ../../../src/tools/gmx_enemat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_enemat.c  -fPIC -DPIC -o .libs/gmx_enemat.o
In file included from ../../../src/tools/gmx_enemat.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_enemat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_enemat.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_enemat.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_gyrate.lo ../../../src/tools/gmx_gyrate.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_gyrate.c  -fPIC -DPIC -o .libs/gmx_gyrate.o
../../../src/tools/gmx_gyrate.c: In function 'gmx_gyrate':
../../../src/tools/gmx_gyrate.c:190:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_gyrate.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_gyrate.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_gyrate.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_gyrate.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c  -fPIC -DPIC -o .libs/gmx_h2order.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_h2order.c:54:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_h2order.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_h2order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_h2order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c  -fPIC -DPIC -o .libs/gmx_filter.o
In file included from ../../../src/tools/gmx_filter.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_filter.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_filter.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_filter.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dipoles.lo ../../../src/tools/gmx_dipoles.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dipoles.c  -fPIC -DPIC -o .libs/gmx_dipoles.o
../../../src/tools/gmx_dipoles.c: In function 'do_gkr':
../../../src/tools/gmx_dipoles.c:156:17: warning: unused variable 'r2' [-Wunused-variable]
   real   qtot,q,r2,cosa,rr,phi;
                 ^~
../../../src/tools/gmx_dipoles.c:155:30: warning: unused variable 'index' [-Wunused-variable]
   int    gi,gj,j0,j1,i,j,k,n,index,grp0,grp1;
                              ^~~~~
../../../src/tools/gmx_dipoles.c: In function 'print_gkrbin':
../../../src/tools/gmx_dipoles.c:291:14: warning: unused variable 'n' [-Wunused-variable]
   int    i,j,n,last;
              ^
../../../src/tools/gmx_dipoles.c:291:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,n,last;
            ^
../../../src/tools/gmx_dipoles.c: In function 'mol_quad':
../../../src/tools/gmx_dipoles.c:418:17: warning: unused variable 'rcom_n' [-Wunused-variable]
   real   rcom_m,rcom_n;
                 ^~~~~~
../../../src/tools/gmx_dipoles.c:418:10: warning: unused variable 'rcom_m' [-Wunused-variable]
   real   rcom_m,rcom_n;
          ^~~~~~
../../../src/tools/gmx_dipoles.c: In function 'compute_avercos':
../../../src/tools/gmx_dipoles.c:580:19: warning: unused variable 'n5' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
                   ^~
../../../src/tools/gmx_dipoles.c:580:13: warning: unused variable 'dc1' [-Wunused-variable]
   double dc,dc1,d,n5,ddc1,ddc2,ddc3;
             ^~~
../../../src/tools/gmx_dipoles.c: In function 'do_dip':
../../../src/tools/gmx_dipoles.c:872:8: warning: unused variable 'gi' [-Wunused-variable]
    int gi,ind0,ind1;
        ^~
../../../src/tools/gmx_dipoles.c:675:27: warning: unused variable 'Vol' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                           ^~~
../../../src/tools/gmx_dipoles.c:675:23: warning: unused variable 'Msq' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                       ^~~
../../../src/tools/gmx_dipoles.c:675:20: warning: unused variable 'Mz' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                    ^~
../../../src/tools/gmx_dipoles.c:675:17: warning: unused variable 'My' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
                 ^~
../../../src/tools/gmx_dipoles.c:675:14: warning: unused variable 'Mx' [-Wunused-variable]
   t_lsq      Mx,My,Mz,Msq,Vol;
              ^~
../../../src/tools/gmx_dipoles.c:668:32: warning: unused variable 'lambda' [-Wunused-variable]
   real       rcut=0,t,t0,t1,dt,lambda,dd,rms_cos;
                                ^~~~~~
../../../src/tools/gmx_dipoles.c:667:25: warning: unused variable 'buf' [-Wunused-variable]
   char       **enm=NULL,buf[STRLEN];
                         ^~~
../../../src/tools/gmx_dipoles.c:665:44: warning: unused variable 'step' [-Wunused-variable]
   int        *dipole_bin,ndipbin,ibin,iVol,step,idim=-1;
                                            ^~~~
../../../src/tools/gmx_dipoles.c:664:32: warning: unused variable 'nmol' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                                ^~~~
../../../src/tools/gmx_dipoles.c:664:18: warning: unused variable 'k' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                  ^
../../../src/tools/gmx_dipoles.c:664:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,k,n,m,natom=0,nmol,status,gnx_tot,teller,tel3;
                ^
../../../src/tools/gmx_dipoles.c: In function 'gmx_dipoles':
../../../src/tools/gmx_dipoles.c:1271:16: warning: unused variable 'bCorr' [-Wunused-variable]
   bool         bCorr,bQuad,bGkr,bMU,bSlab;
                ^~~~~
../../../src/tools/gmx_dipoles.c:1227:31: warning: unused variable 'bMolCorr' [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
../../../src/tools/gmx_dipoles.c:1227:15: warning: variable 'bAverCorr' set but not used [-Wunused-but-set-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
               ^~~~~~~~~
At top level:
../../../src/tools/gmx_dipoles.c:1227:31: warning: 'bMolCorr' defined but not used [-Wunused-variable]
   static bool bAverCorr=FALSE,bMolCorr=FALSE,bPairs=TRUE,bPhi=FALSE;
                               ^~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_dipoles.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_dipoles.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_dipoles.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_morph.lo ../../../src/tools/gmx_morph.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_morph.c  -fPIC -DPIC -o .libs/gmx_morph.o
In file included from ../../../src/tools/gmx_morph.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_morph.c:40:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helix.lo ../../../src/tools/gmx_helix.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helix.c  -fPIC -DPIC -o .libs/gmx_helix.o
../../../src/tools/gmx_helix.c: In function 'gmx_helix':
../../../src/tools/gmx_helix.c:213:21: warning: unused variable 'nre' [-Wunused-variable]
   int        natoms,nre,nres,step;
                     ^~~
In file included from ../../../src/tools/gmx_helix.c:62:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_helix.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_helix.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helix.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmens.lo ../../../src/tools/gmx_nmens.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmens.c  -fPIC -DPIC -o .libs/gmx_nmens.o
../../../src/tools/gmx_nmens.c: In function 'gmx_nmens':
../../../src/tools/gmx_nmens.c:105:14: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int *      eigvalnr;
              ^~~~~~~~
../../../src/tools/gmx_nmens.c:104:19: warning: unused variable 'invfr' [-Wunused-variable]
   real       rfac,invfr,rhalf,jr;
                   ^~~~~
../../../src/tools/gmx_nmens.c:99:21: warning: unused variable 'neigval' [-Wunused-variable]
   int        natoms,neigval;
                     ^~~~~~~
../../../src/tools/gmx_nmens.c:98:22: warning: unused variable 'totmass' [-Wunused-variable]
   real       *eigval,totmass,*invsqrtm,t,disp;
                      ^~~~~~~
../../../src/tools/gmx_nmens.c:89:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmens.c:89:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmens.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmens.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmens.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmens.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmeig.lo ../../../src/tools/gmx_nmeig.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmeig.c  -fPIC -DPIC -o .libs/gmx_nmeig.o
../../../src/tools/gmx_nmeig.c: In function 'nma_full_hessian':
../../../src/tools/gmx_nmeig.c:76:19: warning: unused variable 'rdum' [-Wunused-variable]
     real mass_fac,rdum;
                   ^~~~
../../../src/tools/gmx_nmeig.c: In function 'gmx_nmeig':
../../../src/tools/gmx_nmeig.c:229:15: warning: unused variable 'index' [-Wunused-variable]
   atom_id    *index;
               ^~~~~
../../../src/tools/gmx_nmeig.c:227:24: warning: unused variable 'gnx' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                        ^~~
../../../src/tools/gmx_nmeig.c:227:22: warning: unused variable 'd' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                      ^
../../../src/tools/gmx_nmeig.c:227:20: warning: unused variable 'l' [-Wunused-variable]
   int        i,j,k,l,d,gnx;
                    ^
../../../src/tools/gmx_nmeig.c:226:15: warning: unused variable 'grpname' [-Wunused-variable]
   char       *grpname,title[256];
               ^~~~~~~
../../../src/tools/gmx_nmeig.c:225:36: warning: unused variable 'count' [-Wunused-variable]
   int        natoms,ndim,nrow,ncol,count;
                                    ^~~~~
../../../src/tools/gmx_nmeig.c:224:19: warning: unused variable 'mass_fac' [-Wunused-variable]
   real       rdum,mass_fac;
                   ^~~~~~~~
../../../src/tools/gmx_nmeig.c:224:14: warning: unused variable 'rdum' [-Wunused-variable]
   real       rdum,mass_fac;
              ^~~~
../../../src/tools/gmx_nmeig.c:217:21: warning: unused variable 'trjout' [-Wunused-variable]
   int        status,trjout;
                     ^~~~~~
../../../src/tools/gmx_nmeig.c:217:14: warning: unused variable 'status' [-Wunused-variable]
   int        status,trjout;
              ^~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmeig.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmeig.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmeig.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mindist.lo ../../../src/tools/gmx_mindist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mindist.c  -fPIC -DPIC -o .libs/gmx_mindist.o
../../../src/tools/gmx_mindist.c: In function 'periodic_mindist_plot':
../../../src/tools/gmx_mindist.c:114:10: warning: unused variable 'r' [-Wunused-variable]
   real   r,rmin,rmax,rmint,tmint;
          ^
../../../src/tools/gmx_mindist.c: In function 'dist_plot':
../../../src/tools/gmx_mindist.c:245:16: warning: unused variable 'frout' [-Wunused-variable]
   t_trxframe   frout;
                ^~~~~
../../../src/tools/gmx_mindist.c: In function 'gmx_mindist':
../../../src/tools/gmx_mindist.c:473:15: warning: unused variable 'j' [-Wunused-variable]
   int       i,j,nres=0;
               ^
../../../src/tools/gmx_mindist.c:472:14: warning: unused variable 'atm' [-Wunused-variable]
   FILE      *atm;
              ^~~
../../../src/tools/gmx_mindist.c:467:14: warning: unused variable 't' [-Wunused-variable]
   real       t;
              ^
../../../src/tools/gmx_mindist.c:441:16: warning: unused variable 'bugs' [-Wunused-variable]
   static char *bugs[] = {
                ^~~~
At top level:
../../../src/tools/gmx_mindist.c:441:16: warning: 'bugs' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mindist.c:53:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mindist.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_mindist.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mindist.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_energy.lo ../../../src/tools/gmx_energy.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_energy.c  -fPIC -DPIC -o .libs/gmx_energy.o
../../../src/tools/gmx_energy.c: In function 'select_by_name':
../../../src/tools/gmx_energy.c:139:8: warning: unused variable 'n' [-Wunused-variable]
   int  n,k,kk,j,i,nmatch,nind,nss;
        ^
../../../src/tools/gmx_energy.c: In function 'analyse_ener':
../../../src/tools/gmx_energy.c:529:16: warning: unused variable 'kkk' [-Wunused-variable]
   int  i,j,m,k,kkk;
                ^~~
../../../src/tools/gmx_energy.c:524:30: warning: unused variable 'diffav' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                              ^~~~~~
../../../src/tools/gmx_energy.c:524:22: warning: unused variable 'diffsum' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
                      ^~~~~~~
../../../src/tools/gmx_energy.c:524:14: warning: unused variable 'oldfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
              ^~~~~~~
../../../src/tools/gmx_energy.c:524:8: warning: unused variable 'sfrac' [-Wunused-variable]
   real sfrac,oldfrac,diffsum,diffav,fstep,pr_aver,pr_stddev,fluct2;
        ^~~~~
../../../src/tools/gmx_energy.c: In function 'fec':
../../../src/tools/gmx_energy.c:770:8: warning: unused variable 't' [-Wunused-variable]
   real t, aver, beta;
        ^
../../../src/tools/gmx_energy.c:766:22: warning: unused variable 'step' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
                      ^~~~
../../../src/tools/gmx_energy.c:766:8: warning: unused variable 'nre' [-Wunused-variable]
   int  nre,timecheck,step,nenergy2,maxenergy;
        ^~~
../../../src/tools/gmx_energy.c: In function 'gmx_energy':
../../../src/tools/gmx_energy.c:979:16: warning: unused variable 'nms' [-Wunused-variable]
   char       **nms;
                ^~~
../../../src/tools/gmx_energy.c:977:27: warning: unused variable 'enm2' [-Wunused-variable]
   char       **enm=NULL,**enm2=NULL,**leg=NULL,**pairleg,**odtleg,**otenleg;
                           ^~~~
../../../src/tools/gmx_energy.c:973:42: warning: unused variable 'bEDR' [-Wunused-variable]
   bool       bFoundFirst,bFoundOld,bCont,bEDR,bVisco;
                                          ^~~~
../../../src/tools/gmx_energy.c:959:23: warning: unused variable 'ee' [-Wunused-variable]
   t_energy   *oldee,**ee;
                       ^~
../../../src/tools/gmx_energy.c:953:16: warning: unused variable 'drout' [-Wunused-variable]
   FILE       **drout;
                ^~~~~
At top level:
../../../src/tools/gmx_energy.c:118:12: warning: 'strcount' defined but not used [-Wunused-function]
 static int strcount(char *s1,char *s2)
            ^~~~~~~~
In file included from ../../../src/tools/gmx_energy.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_energy.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_energy.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_energy.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_msd.lo ../../../src/tools/gmx_msd.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_msd.c  -fPIC -DPIC -o .libs/gmx_msd.o
../../../src/tools/gmx_msd.c: In function 'printmol':
../../../src/tools/gmx_msd.c:455:13: warning: unused variable 'r' [-Wunused-variable]
   real  a,b,r,D,Dav,D2av,VarD,sqrtD,sqrtD_max,scale;
             ^
../../../src/tools/gmx_msd.c:452:14: warning: unused variable 'out_pdb' [-Wunused-variable]
   FILE  *out,out_pdb;
              ^~~~~~~
At top level:
../../../src/tools/gmx_msd.c:144:13: warning: 'done_corr' defined but not used [-Wunused-function]
 static void done_corr(t_corr *this)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_msd.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_msd.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../src/tools/gmx_msd.c: In function 'corr_loop':
../../../include/vec.h:362:8: warning: '*((void *)&com+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[ZZ]=a[ZZ];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+16)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:361:8: warning: '*((void *)&com+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[YY]=a[YY];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: '*((void *)&com+8)' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
In file included from ../../../src/tools/gmx_msd.c:57:
../../../include/vec.h:360:8: warning: 'com' may be used uninitialized in this function [-Wmaybe-uninitialized]
   b[XX]=a[XX];
   ~~~~~^~~~~~
../../../src/tools/gmx_msd.c:525:29: note: 'com' was declared here
   rvec         *x[2],*xa[2],com;
                             ^~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_principal.lo ../../../src/tools/gmx_principal.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_principal.c  -fPIC -DPIC -o .libs/gmx_principal.o
../../../src/tools/gmx_principal.c: In function 'gmx_principal':
../../../src/tools/gmx_principal.c:97:20: warning: unused variable 'a3' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                    ^~
../../../src/tools/gmx_principal.c:97:17: warning: unused variable 'a2' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
                 ^~
../../../src/tools/gmx_principal.c:97:14: warning: unused variable 'a1' [-Wunused-variable]
   rvec       a1,a2,a3,moi;
              ^~
../../../src/tools/gmx_principal.c:95:28: warning: unused variable 'mol' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                            ^~~
../../../src/tools/gmx_principal.c:95:24: warning: unused variable 'nam' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                        ^~~
../../../src/tools/gmx_principal.c:95:18: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                  ^
../../../src/tools/gmx_principal.c:95:16: warning: unused variable 'j' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
                ^
../../../src/tools/gmx_principal.c:95:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,j,m,gnx,nam,mol;
              ^
In file included from ../../../src/tools/gmx_principal.c:50:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_principal.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_principal.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_principal.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_order.lo ../../../src/tools/gmx_order.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_order.c  -fPIC -DPIC -o .libs/gmx_order.o
../../../src/tools/gmx_order.c: In function 'find_nearest_neighbours':
../../../src/tools/gmx_order.c:86:12: warning: unused variable 'nnb' [-Wunused-variable]
   int    **nnb;
            ^~~
../../../src/tools/gmx_order.c:85:14: warning: unused variable 'mm' [-Wunused-variable]
   int     m1,mm;
              ^~
../../../src/tools/gmx_order.c:85:11: warning: unused variable 'm1' [-Wunused-variable]
   int     m1,mm;
           ^~
../../../src/tools/gmx_order.c:84:12: warning: unused variable 'd' [-Wunused-variable]
   t_dist  *d;
            ^
../../../src/tools/gmx_order.c:83:12: warning: unused variable 'dmat' [-Wunused-variable]
   t_mat   *dmat;
            ^~~~
../../../src/tools/gmx_order.c:80:18: warning: unused variable 'dx2' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
                  ^~~
../../../src/tools/gmx_order.c:80:14: warning: unused variable 'dx1' [-Wunused-variable]
   rvec    dx,dx1,dx2,rj,rk,urk,urj;
              ^~~
../../../src/tools/gmx_order.c:79:14: warning: unused variable 'i2' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
              ^~
../../../src/tools/gmx_order.c:79:11: warning: unused variable 'i1' [-Wunused-variable]
   int     i1,i2,i,ibin,j,k,l,n,*nn[4];
           ^~
../../../src/tools/gmx_order.c:77:11: warning: unused variable 'fnsgdist' [-Wunused-variable]
   char    fnsgdist[32];
           ^~~~~~~~
../../../src/tools/gmx_order.c:76:12: warning: unused variable 'fpoutdist' [-Wunused-variable]
   FILE    *fpoutdist;
            ^~~~~~~~~
../../../src/tools/gmx_order.c: In function 'calc_tetra_order_parm':
../../../src/tools/gmx_order.c:228:14: warning: unused variable 'i' [-Wunused-variable]
   int        i,*isize,ng,nframes;
              ^
../../../src/tools/gmx_order.c:219:39: warning: unused variable 'subtitle' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                                       ^~~~~~~~
../../../src/tools/gmx_order.c:219:28: warning: unused variable 'fn' [-Wunused-variable]
   char       title[STRLEN],fn[STRLEN],subtitle[STRLEN];
                            ^~
../../../src/tools/gmx_order.c: In function 'calc_order':
../../../src/tools/gmx_order.c:315:9: warning: unused variable 'dbangle' [-Wunused-variable]
    real dbangle = 0, /* angle between double bond and  axis            */
         ^~~~~~~
../../../src/tools/gmx_order.c:311:13: warning: unused variable 'l' [-Wunused-variable]
     i,j,m,k,l,teller = 0,
             ^
../../../src/tools/gmx_order.c: In function 'gmx_order':
../../../src/tools/gmx_order.c:556:13: warning: unused variable 'i' [-Wunused-variable]
             i,
             ^
In file included from ../../../src/tools/gmx_order.c:52:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_order.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_order.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_order.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rama.lo ../../../src/tools/gmx_rama.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rama.c  -fPIC -DPIC -o .libs/gmx_rama.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rama.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rama.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rama.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rama.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_potential.lo ../../../src/tools/gmx_potential.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_potential.c  -fPIC -DPIC -o .libs/gmx_potential.o
../../../src/tools/gmx_potential.c: In function 'calc_potential':
../../../src/tools/gmx_potential.c:108:9: warning: unused variable 'j' [-Wunused-variable]
       i,j,n,             /* loop indices */
         ^
../../../src/tools/gmx_potential.c:107:9: warning: unused variable 'slCount' [-Wunused-variable]
       **slCount,         /* nr. of atoms in one slice for a group */
         ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_potential.c:55:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_potential.c:53:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_potential.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_potential.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_polystat.lo ../../../src/tools/gmx_polystat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_polystat.c  -fPIC -DPIC -o .libs/gmx_polystat.o
In file included from ../../../src/tools/gmx_polystat.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_polystat.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_polystat.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_polystat.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rotacf.lo ../../../src/tools/gmx_rotacf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rotacf.c  -fPIC -DPIC -o .libs/gmx_rotacf.o
In file included from ../../../src/tools/gmx_rotacf.c:54:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rotacf.c:54:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_rotacf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rotacf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsf.lo ../../../src/tools/gmx_rmsf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsf.c  -fPIC -DPIC -o .libs/gmx_rmsf.o
../../../src/tools/gmx_rmsf.c: In function 'gmx_rmsf':
../../../src/tools/gmx_rmsf.c:211:16: warning: unused variable 'buf' [-Wunused-variable]
   char         buf[256],*label;
                ^~~
../../../src/tools/gmx_rmsf.c:210:33: warning: unused variable 'res0' [-Wunused-variable]
   int          status,npdbatoms,res0;
                                 ^~~~
../../../src/tools/gmx_rmsf.c:206:16: warning: unused variable 'bCont' [-Wunused-variable]
   bool         bCont;
                ^~~~~
../../../src/tools/gmx_rmsf.c:202:16: warning: unused variable 'ir' [-Wunused-variable]
   t_inputrec   ir;
                ^~
../../../src/tools/gmx_rmsf.c:201:16: warning: unused variable 'header' [-Wunused-variable]
   t_tpxheader  header;
                ^~~~~~
../../../src/tools/gmx_rmsf.c:199:33: warning: unused variable 'w_rms' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                                 ^~~~~
../../../src/tools/gmx_rmsf.c:199:18: warning: unused variable 'lambda' [-Wunused-variable]
   real         t,lambda,*w_rls,*w_rms;
                  ^~~~~~
../../../src/tools/gmx_rmsf.c:198:40: warning: unused variable 'g' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                                        ^
../../../src/tools/gmx_rmsf.c:198:31: warning: unused variable 'natoms' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                               ^~~~~~
../../../src/tools/gmx_rmsf.c:198:21: warning: unused variable 'nre' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                     ^~~
../../../src/tools/gmx_rmsf.c:198:16: warning: unused variable 'step' [-Wunused-variable]
   int          step,nre,natom,natoms,i,g,m,teller=0;
                ^~~~
../../../src/tools/gmx_rmsf.c:189:39: warning: unused variable 'bdevX' [-Wunused-variable]
   static bool bRes=FALSE,bAniso=FALSE,bdevX=FALSE,bFit=TRUE;
                                       ^~~~~
At top level:
../../../src/tools/gmx_rmsf.c:189:39: warning: 'bdevX' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_rmsf.c:50:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_rmsf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsf.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c  -fPIC -DPIC -o .libs/gmx_rmsdist.o
../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent':
../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable]
   FILE   *fp;
           ^~
../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist':
../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                    ^~
../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                                 ^~
../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable]
   int          natom,i,j,teller,gi,gj;
                        ^
In file included from ../../../src/tools/gmx_rmsdist.c:52:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rmsdist.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rmsdist.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rmsdist.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c  -fPIC -DPIC -o .libs/gmx_hbond.o
../../../src/tools/gmx_hbond.c: In function 'mk_hbmap':
../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j;
          ^
../../../src/tools/gmx_hbond.c: In function 'add_frames':
../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable]
   int  i,j,k,l;
              ^
../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable]
   int  i,j,k,l;
            ^
../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable]
   int  i,j,k,l;
          ^
../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable]
   int  i,j,k,l;
        ^
../../../src/tools/gmx_hbond.c: In function 'search_donors':
../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable]
   bool       stop;
              ^~~~
../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,nra,n;
                      ^
../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable]
   int        i,j,nra,n;
                  ^~~
../../../src/tools/gmx_hbond.c: In function 'is_hbond':
../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable]
   int  h,hh,id,ja,ihb;
                   ^~~
../../../src/tools/gmx_hbond.c: In function 'merge_hb':
../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                            ^~~~
../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                        ^~~
../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable]
   int  i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp;
                                ^
../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist':
../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable]
   h_id nhb;
        ^~~
../../../src/tools/gmx_hbond.c: In function 'smooth_tail':
../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable]
   FILE *fp;
         ^~
../../../src/tools/gmx_hbond.c: In function 'analyse_corr':
../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                                                        ^~
../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                            ^~~
../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
                         ^~
../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable]
   real   Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg;
              ^~~~~
../../../src/tools/gmx_hbond.c: In function 'do_hbac':
../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable]
   int   nh,nhbonds,nhydro,ngh;
                           ^~~
../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                  ^~
../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable]
   int  i,j,k,m,n,nd,ihb,idist,n2,nn;
                ^
../../../src/tools/gmx_hbond.c: In function 'gmx_hbond':
../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable]
   int        grp,nabin,nrbin,bin,resdist,ihb;
                              ^~~
../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                           ^~~
../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable]
   bool    bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric;
                                       ^~~
../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                                  ^~
../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                               ^~
../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                           ^~~
../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                     ^~~~~
../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable]
   int     h,i,j,k,l,start,end,id,ja,ogrp,nsel;
                   ^
At top level:
../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function]
 static bool in_list(atom_id selection,int isize,atom_id *index)
             ^~~~~~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.h:40,
                 from ../../../src/tools/gmx_hbond.c:59:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_hbond.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_hbond.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_hbond.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_hbond.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c  -fPIC -DPIC -o .libs/gmx_rdf.o
../../../src/tools/gmx_rdf.c: In function 'do_rdf':
../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable]
   atom_id    **index,*index_cm=NULL;
                       ^~~~~~~~
../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable]
   int        *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g;
                     ^~~~~~~~
../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                        ^
../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                     ^~
../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable]
   int        g,natoms,i,j,k,nbin,j0,j1,n,nframes;
                                  ^~
../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
                            ^~~~~
../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable]
   char       outf1[STRLEN],outf2[STRLEN];
              ^~~~~
In file included from ../../../include/fftgrid.h:46,
                 from ../../../src/tools/gmx_rdf.c:57:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rdf.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rdf.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_rdf.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rdf.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_saltbr.lo ../../../src/tools/gmx_saltbr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_saltbr.c  -fPIC -DPIC -o .libs/gmx_saltbr.o
../../../src/tools/gmx_saltbr.c: In function 'gmx_saltbr':
../../../src/tools/gmx_saltbr.c:163:14: warning: unused variable 'label' [-Wunused-variable]
   char       label[234];
              ^~~~~
../../../src/tools/gmx_saltbr.c:162:17: warning: unused variable 'dt' [-Wunused-variable]
   double     t0,dt;
                 ^~
../../../src/tools/gmx_saltbr.c:162:14: warning: unused variable 't0' [-Wunused-variable]
   double     t0,dt;
              ^~
../../../src/tools/gmx_saltbr.c:156:50: warning: unused variable 'n3' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                                  ^~
../../../src/tools/gmx_saltbr.c:156:47: warning: unused variable 'n2' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                               ^~
../../../src/tools/gmx_saltbr.c:156:44: warning: unused variable 'n1' [-Wunused-variable]
   int        status,i,j,k,m,nnn,teller,ncg,n1,n2,n3,natoms;
                                            ^~
In file included from ../../../src/tools/gmx_saltbr.c:48:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_saltbr.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_saltbr.c:43:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_saltbr.c:43:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sas.lo ../../../src/tools/gmx_sas.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sas.c  -fPIC -DPIC -o .libs/gmx_sas.o
../../../src/tools/gmx_sas.c: In function 'sas_plot':
../../../src/tools/gmx_sas.c:369:12: warning: unused variable 'mm' [-Wunused-variable]
       real mm;
            ^~
In file included from ../../../src/tools/gmx_sas.c:55:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sas.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sas.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sas.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sas.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sas.c: In function 'connelly_plot':
../../../src/tools/gmx_sas.c:152:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 6 [-Wformat-overflow=]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                             ^~
../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647]
       sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1);
                                            ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_sas.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c  -fPIC -DPIC -o .libs/gmx_rms.o
In file included from ../../../src/tools/gmx_rms.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_rms.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_rms.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_rms.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c  -fPIC -DPIC -o .libs/gmx_sgangle.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sgangle.c:52:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sgangle.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sgangle.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sgangle.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c  -fPIC -DPIC -o .libs/gmx_sorient.o
../../../src/tools/gmx_sorient.c: In function 'gmx_sorient':
../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                        ^~~~
../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                                                                   ^~~~
../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable]
   real    inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot;
                    ^~~~~~
../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable]
   int     i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin;
             ^
In file included from ../../../src/tools/gmx_sorient.c:45:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sorient.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_sorient.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sorient.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c  -fPIC -DPIC -o .libs/gmx_velacc.o
In file included from ../../../src/tools/gmx_velacc.c:57:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_velacc.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_velacc.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_velacc.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c  -fPIC -DPIC -o .libs/gmx_spol.o
../../../src/tools/gmx_spol.c: In function 'gmx_spol':
../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable]
   rvec     *xtop,*x,xref,try,dx,dip,dir;
             ^~~~
../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable]
   char     title[STRLEN];
            ^~~~~
At top level:
../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable]
   static bool bCom = FALSE,bPBC = FALSE;
                            ^~~~
In file included from ../../../src/tools/gmx_spol.c:45:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_spol.c:45:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_spol.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_spol.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c  -fPIC -DPIC -o .libs/gmx_sdf.o
../../../src/tools/gmx_sdf.c: In function 'do_sdf':
../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable]
   bool       bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE;
                         ^~~~~~~~
../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable]
   atom_id    ix,jx;
                 ^~
../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable]
   atom_id    ix,jx;
              ^~
../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable]
   rvec       *x,xcog,dx,*x_i1,xi,*x_refmol;
                 ^~~~
../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable]
   real       t,boxmin,hbox,normfac;
                       ^~~~
../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable]
   atom_id    *index_ref=NULL;
               ^~~~~~~~~
../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable]
   atom_id    *index_cg=NULL;
               ^~~~~~~~
../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable]
   int        nrefmol=0,refc=0;
                        ^~~~
../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable]
   int        isize_ref=3;
              ^~~~~~~~~
../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable]
   int        isize_cg=0;
              ^~~~~~~~
../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                         ^~~~
../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable]
   int        ng,natoms,i,j,k,l,X,Y,Z,lc,dest;
                                      ^~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sdf.c:33:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_sdf.c:31:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sdf.c:28:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sdf.c:28:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable]
 static char *SRCID_template_c = "$Id$";
              ^~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c  -fPIC -DPIC -o .libs/gmx_tcaf.o
../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf':
../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable]
   real       **c1,**tc;
                ^~
../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable]
   bool       bTPS,bTop; /* ,bCubic; */
              ^~~~
In file included from ../../../src/tools/gmx_tcaf.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_tcaf.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/gmx_tcaf.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_tcaf.c:43:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c  -fPIC -DPIC -o .libs/correl.o
../../../src/tools/correl.c: In function 'complex_mult':
../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable]
   int  i,no2,n_2,k;
          ^~~
In file included from ../../../include/gmx_fft.h:41,
                 from ../../../src/tools/correl.c:43:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c  -fPIC -DPIC -o .libs/gmx_traj.o
../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac':
../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable]
   bool    bOne;
           ^~~~
../../../src/tools/gmx_traj.c: In function 'gmx_traj':
../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable]
   int        i,j,n;
                  ^
In file included from ../../../src/tools/gmx_traj.c:49:
At top level:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_traj.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_traj.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_traj.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c  -fPIC -DPIC -o .libs/gmx_clustsize.o
../../../src/tools/gmx_clustsize.c: In function 'clust_size':
../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                                                  ^~~
../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable]
   int     i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0;
                       ^~
../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable]
   int     version,generation,sss,ii,jj,nsame;
                                        ^~~~~
../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize':
../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable]
   bool       bSQ,bRDF;
                  ^~~~
../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable]
   bool       bSQ,bRDF;
              ^~~
In file included from ../../../include/pme.h:46,
                 from ../../../src/tools/gmx_clustsize.c:62:
At top level:
../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function]
 static t_complex cdiv(t_complex teller,t_complex noemer)
                  ^~~~
../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function]
 static t_complex csub(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function]
 static t_complex cadd(t_complex a,t_complex b)
                  ^~~~
../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function]
 static t_complex rcexp(real r)
                  ^~~~~
../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable]
 static t_complex cnul = { 0.0, 0.0 };
                  ^~~~
In file included from ../../../src/tools/gmx_clustsize.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_clustsize.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_clustsize.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_clustsize.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c  -fPIC -DPIC -o .libs/gmx_mdmat.o
../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat':
../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable]
   int        nr0;
              ^~~
../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable]
   int        i,j,status,nres,natoms,nframes,it,trxnat;
                                             ^~
../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable]
   static bool bAtom=FALSE;
               ^~~~~
At top level:
../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable]
In file included from ../../../src/tools/gmx_mdmat.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_mdmat.c:48:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_mdmat.c:44:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_mdmat.c:44:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c  -fPIC -DPIC -o .libs/gmx_helixorient.o
../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient':
../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable]
     real tmp,rotangle;
              ^~~~~~~~
../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable]
     rvec axes[3];
          ^~~~
../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable]
     rvec axes_t0[3];
          ^~~~~~~
../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                           ^~~~~
../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                      ^~~~
../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                   ^~
../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable]
     rvec v1,v2,p1,p2,vtmp,vproj;
                ^~
../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable]
     rvec averageaxis;
          ^~~~~~~~~~~
../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable]
     int d,i,j,teller=0;
         ^
../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable]
     rvec *x=NULL,dx;
                  ^~
In file included from ../../../src/tools/gmx_helixorient.c:48:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_helixorient.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_helixorient.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_helixorient.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c  -fPIC -DPIC -o .libs/gmx_nmtraj.o
../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj':
../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable]
   real       dum;
              ^~~
../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable]
   bool       found;
              ^~~~~
../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable]
   real       omega,Ekin,sum,m,vel;
                         ^~~
../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable]
   real       *out_eigval;
               ^~~~~~~~~~
../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable]
   int        neigval;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable]
   char *     grpname;
              ^~~~~~~
../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable]
   char *     indexfile;
              ^~~~~~~~~
../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                              ^
../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable]
   int        i,j,k,kmode,d,s,v;
                            ^
../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable]
   int        *eigvalnr;
               ^~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:54:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:50:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_nmtraj.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_nmtraj.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c  -fPIC -DPIC -o .libs/gmx_trjorder.o
In file included from ../../../src/tools/gmx_trjorder.c:49:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjorder.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjorder.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjorder.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c  -fPIC -DPIC -o .libs/gmx_trjcat.o
../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files':
../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable]
   real t;
        ^
../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat':
../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable]
   int         earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step;
                                                          ^~~~~~~~~~~~
../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable]
   char        **fnms,**fnms_out,*in_file,*out_file;
                                  ^~~~~~~
../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable]
   rvec        *x,*v;
                   ^
../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable]
   rvec        *x,*v;
                ^
../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                                                     ^~~~~~
../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable]
   int         status,ftpin,i,frame,frame_out,step=0,trjout=0;
                      ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:56:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjcat.c:56:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjcat.c:52:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjcat.c:50:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjcat.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c  -fPIC -DPIC -o .libs/gmx_sham.o
../../../src/tools/gmx_sham.c: In function 'do_sham':
../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable]
   int     i,j,k,imin,len,index,d,*nbin,*bindex,bi;
                                ^
../../../src/tools/gmx_sham.c: In function 'gmx_sham':
../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                         ^~
../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                                    ^~~~
../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                               ^~~~
../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                          ^~~~
../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                     ^~~~
../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
                 ^~~
../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable]
   double   *av,*sig,cum1,cum2,cum3,cum4,db;
             ^~
../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable]
   real     **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error;
                                                              ^~~
../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                                                   ^
../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                            ^
../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable]
   int      n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox;
                      ^~~~~
../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable]
   FILE     *out;
             ^~~
../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                           ^~~~
At top level:
../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable]
../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable]
   static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1;
                                    ^~~~~~~
../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                      ^~~~~~
../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                  ^~~~~~~~~
../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable]
   static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE;
                                                                  ^~~~~
../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
               ^~~~~~
../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                            ^~~~~~
../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                         ^~~~~~~~
../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable]
   static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE;
                                                        ^~~~~~
../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable]
   static bool bShamEner=TRUE,bSham=TRUE;
               ^~~~~~~~~
../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                          ^~~~~~
../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable]
   static int  nsets_in=1,nb_min=4,resol=10,nlevels=25;
                                   ^~~~~
In file included from ../../../src/tools/gmx_sham.c:56:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_sham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_sham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_sham.c:41:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c  -fPIC -DPIC -o .libs/gmx_genbox.o
../../../src/tools/gmx_genbox.c: In function 'gmx_genbox':
../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable]
   t_pbc   pbc;
           ^~~
In file included from ../../../src/tools/gmx_genbox.c:61:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genbox.c:57:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genbox.c:55:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genbox.c:55:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genbox.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_genbox.c: In function 'update_top.constprop':
../../../src/tools/gmx_genbox.c:538:19: warning: ' in water
   ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
    sprintf(buf,"%s in water\n",buf2);
                   ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/gmx_genbox.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c  -fPIC -DPIC -o .libs/gmx_editconf.o
../../../src/tools/gmx_editconf.c: In function 'calc_geom':
../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable]
   char    *grpnames;
            ^~~~~~~~
../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac':
../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable]
   FILE *out;
         ^~~
../../../src/tools/gmx_editconf.c: In function 'gmx_editconf':
../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                                   ^~~~~
../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                             ^~~~~
../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                       ^~~~~
../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                    ^~
../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
                 ^~
../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable]
   real       xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw;
              ^~
../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable]
   bool       bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter;
                                      ^~~~~~
../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable]
   atom_id    *index,*sindex,*tindex;
                              ^~~~~~
../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable]
   int        isize,ssize,tsize;
                          ^~~~~
../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                        ^~~~
At top level:
../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable]
../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable]
   static real dist=0.0,rbox=0.0,to_diam=0.0;
                                 ^~~~~~~
../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable]
 static char *pdbtp[epdbNR]={"ATOM  ","HETATM"};
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:53:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_editconf.c:53:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_editconf.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_editconf.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_editconf.c:43:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c  -fPIC -DPIC -o .libs/gmx_wham.o
In file included from ../../../src/tools/gmx_wham.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wham.c:47:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wham.c:47:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wham.c:44:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe':
../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
         sprintf(Buffer,"%s -c < %s",gunzip,fn);
                           ^~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../src/tools/gmx_wham.c:37:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c  -fPIC -DPIC -o .libs/gmx_genion.o
../../../src/tools/gmx_genion.c: In function 'insert_ion':
../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable]
   rvec xei,dx;
        ^~~
../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                             ^
../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                       ^~~~~
../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable]
   int  i,ii,ei,owater,wlast,m,nw;
                ^~~~~~
In file included from ../../../src/tools/gmx_genion.c:54:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genion.c:48:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genion.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genion.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c  -fPIC -DPIC -o .libs/gmx_trjconv.o
../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster':
../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable]
   int     m,i,j,j0,j1,jj,ai,iter,is;
                                  ^~
../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box':
../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable]
   rvec    com,new_com,shift,dx,box_center;
                             ^~
../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box':
../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable]
   atom_id i, j, res_start, res_end, res_nat;
                                     ^~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable]
   int          xdr=0;
                ^~~
../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable]
   char         top_title[256],title[256],command[256],filemode[5];
                                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable]
   bool         bFit,bFitXY,bPFit,bReset;
                     ^~~~~~
../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable]
   char         *gn_fit,*gn_rms;
                         ^~~~~~
../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable]
   atom_id      *ind_fit,*ind_rms;
                          ^~~~~~~
../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable]
   int          ifit,irms,my_clust=-1;
                     ^~~~
../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable]
   int          m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr;
                                                       ^~~
../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                       ^~~~~~
../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable]
   real         xtcpr, lambda,*w_rls=NULL;
                ^~~~~
../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                                 ^~
../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable]
   rvec         *xp=NULL,x_shift,hbox,box_center,dx;
                                      ^~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_trjconv.c:57:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_trjconv.c:53:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_trjconv.c:51:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_trjconv.c:47:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv':
../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=]
        sprintf(title,"Generated by trjconv : %s t= %9.5f",
                                              ^~
         top_title,fr.time);
         ~~~~~~~~~                             
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
   sprintf(title,"%s t= %9.5f",top_title,frout.time);
                    ^~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/macros.h:49,
                 from ../../../src/tools/gmx_trjconv.c:42:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c  -fPIC -DPIC -o .libs/gmx_genconf.o
../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function]
 static void move_x(int natoms,rvec x[],matrix box)
             ^~~~~~
In file included from ../../../src/tools/gmx_genconf.c:48:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_genconf.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_genconf.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c  -fPIC -DPIC -o .libs/gmx_wheel.o
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_wheel.c:55:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_wheel.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_wheel.c:49:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_wheel.c:49:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c  -fPIC -DPIC -o .libs/gmx_genpr.o
In file included from ../../../src/tools/gmx_genpr.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/gmx_genpr.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/gmx_genpr.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_genpr.c:42:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c  -fPIC -DPIC -o .libs/gmx_xpm2ps.o
../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat':
../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable]
   int    i,j,k,x,y,col;
              ^
../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,k,x,y,col;
            ^
../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable]
   char   buf[100];
          ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing':
../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable]
   bool bTryAgain,bFive;
                  ^~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable]
   int    i,j,x,y,col,leg=0;
            ^
../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix':
../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable]
   t_mapping *map=NULL;
              ^~~
../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps':
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable]
   static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE;
                                                        ^~~~
At top level:
../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable]
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_xpm2ps.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/gmx_xpm2ps.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat':
../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_x[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
       sprintf(buf,"%g",mat[i].axis_y[j]);
                      ^
In file included from /usr/include/stdio.h:862,
                 from ../../../include/string2.h:56,
                 from ../../../src/tools/gmx_xpm2ps.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c  -fPIC -DPIC -o .libs/gmx_eneconv.o
../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv':
../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable]
   bool       ok;
              ^~
../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
                                   ^~~~~
../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable]
   char       inputstring[STRLEN],*chptr;
              ^~~~~~~~~~~
../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable]
   real       *readtime,*settime,timestep,t1,tadjust;
                                          ^~
../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable]
   int        nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL;
                                          ^
At top level:
../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function]
 static bool same_time(real t1,real t2)
             ^~~~~~~~~
In file included from ../../../src/tools/gmx_eneconv.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_eneconv.c:45:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c  -fPIC -DPIC -o .libs/gmx_vanhove.o
In file included from ../../../src/tools/gmx_vanhove.c:56:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:51:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/gmx_vanhove.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/gmx_vanhove.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/mk_angndx.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/mk_angndx.c:42:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c  -fPIC -DPIC -o .libs/calcpot.o
../../../src/tools/calcpot.c: In function 'c_tabpot':
../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable]
   real qqO,qj;
        ^~~
../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                                           ^~~~~~
../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                        ^~~
../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                    ^~~
../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
                ^~~
../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
            ^~~
../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable]
   real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O;
        ^~~
../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                            ^~~
../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                        ^~~
../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                    ^~~
../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
                ^~~
../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
            ^~~
../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable]
   real fxJ,fyJ,fzJ,fxO,fyO,fzO;
        ^~~
../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable]
   int  ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid;
                                      ^~~~
../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
                                                  ^~
../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable]
   real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF;
               ^~~~
../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable]
   const real two = 2.000000;
              ^~~
../../../src/tools/calcpot.c: In function 'calc_pot':
../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec        box_size;
               ^~~~~~~~
../../../src/tools/calcpot.c: In function 'init_calcpot':
../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec     box_size;
            ^~~~~~~~
In file included from ../../../src/tools/calcpot.c:46:
At top level:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/calcpot.c:40:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/calcpot.c:40:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c  -fPIC -DPIC -o .libs/addconf.o
../../../src/tools/addconf.c: In function 'do_nsgrid':
../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable]
   rvec       box_size;
              ^~~~~~~~
../../../src/tools/addconf.c: In function 'add_conf':
../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable]
   rvec       dx,xi,xj,xpp,*x_all,*v_all;
                       ^~~
../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                                  ^~~
../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                              ^~~
../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                          ^~~
../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                      ^~~
../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
                  ^~~
../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable]
   int        dx0,dx1,dy0,dy1,dz0,dz1;
              ^~~
../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                            ^~~~~~~~~
../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                     ^~~~~~
../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                   ^
../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                                 ^
../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable]
   int        prev,resnr,nresadd,d,k,ncells,maxincell;
                   ^~~~~
../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                                               ^~~~~
../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                     ^
../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable]
   int        i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2;
                  ^~
../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                               ^~~
../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable]
   real       max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2;
                                           ^~~
At top level:
../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function]
 static void set_margin(t_atoms *atoms, rvec *x, real *r)
             ^~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/addconf.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/addconf.c:46:
../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable]
 static char *sepdvdlformat="  %-30s V %12.5e  dVdl %12.5e\n";
              ^~~~~~~~~~~~~
In file included from ../../../src/tools/addconf.c:42:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/addconf.c:42:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c
 mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c  -fPIC -DPIC -o .libs/edittop.o
../../../src/tools/edittop.c: In function 'delete_from_block':
../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable]
   int i,i1,j1,j,k;
                 ^
../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable]
   int i,i1,j1,j,k;
            ^~
../../../src/tools/edittop.c: In function 'delete_atom':
../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable]
   int k;
       ^
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c
../../../src/tools/anadock.c: In function 'rmsd_dist':
../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable]
   real rmsd,dist;
             ^~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/tools/anadock.c:47:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/tools/anadock.c:46:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/anadock.c:46:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/anadock.c:41:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
../../../src/tools/anadock.c: In function 'main':
../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                      ^~
../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647]
     sprintf(name,"%s_%d.pdb",buf,i+1);
                  ^~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../include/typedefs.h:52,
                 from ../../../include/confio.h:44,
                 from ../../../src/tools/anadock.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c
../../../src/tools/make_edi.c: In function 'sscan_list':
../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
              else status=sError; break;
              ^~~~
../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
              else status=sError; break;
                                  ^~~~~
../../../src/tools/make_edi.c: In function 'main':
../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable]
     bool bTop, bFit1;
          ^~~~
In file included from ../../../src/tools/make_edi.c:56:
At top level:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/make_edi.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:50:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_edi.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_edi.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
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mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c
../../../src/tools/sigeps.c: In function 'main':
../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable]
   real      qq,x,oldx,minimum,mval,dp[2],pp[2];
                                          ^~
In file included from ../../../src/tools/sigeps.c:50:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/sigeps.c:50:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/sigeps.c:47:
../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable]
 static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~~
../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable]
 static char *pdbformat ="%-6s%5u  %-4.4s%3.3s %c%4d    %8.3f%8.3f%8.3f";
              ^~~~~~~~~
In file included from ../../../src/tools/sigeps.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/sigeps.c:43:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c
In file included from ../../../src/tools/make_ndx.c:52:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/tools/make_ndx.c:52:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
In file included from ../../../src/tools/make_ndx.c:48:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/tools/make_ndx.c:46:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
../../../src/tools/make_ndx.c: In function 'main':
../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
   sprintf(gname,"%s_&_%s",gname1,gname2);
                    ^~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
   sprintf(gname,"%s_%s",gname1,gname2);
                     ^~         ~~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/tools/make_ndx.c:41:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi_d.la	../mdlib/libmd_mpi_d.la	 -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.5 -o .libs/libgmxana_mpi_d.so.5.0.0
(cd .libs && rm -f libgmxana_mpi_d.so.5 && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5)
(cd .libs && rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so)
creating libgmxana_mpi_d.la
(cd .libs && rm -f libgmxana_mpi_d.la && ln -s ../libgmxana_mpi_d.la libgmxana_mpi_d.la)
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_genpr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genrestr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_genconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating do_dssp
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/addconf.o .libs/gmx_genbox.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genbox
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_ndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_eneconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating eneconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_editconf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating editconf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o .libs/gmx_nmtraj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmtraj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjcat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjcat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating mk_angndx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjconv.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjconv
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/calcpot.o .libs/gmx_genion.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating genion
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_wheel.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating wheel
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjorder.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating trjorder
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_xpm2ps.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating xpm2ps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating anadock
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating make_edi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o .libs/gmx_anaeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_anaeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_analyze
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/gmx_bond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_angle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_bundle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_bundle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_cluster
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_chi
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_confrms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_confrms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_current.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_current
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_covar
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_density.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_density
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dih.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dih
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_densmap.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_densmap
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dielectric
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_helixorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helixorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_principal.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_principal
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dipoles
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_disre.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_disre
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_enemat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_enemat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dyndom.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dyndom
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_dist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_energy
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_lie.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_lie
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_gyrate
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_filter.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_filter
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_h2order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_h2order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_mindist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mindist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_hbond
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/gmx_msd.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_msd
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_helix
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_morph.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_morph
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmens
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_nmeig
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_order.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_order
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_polystat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_polystat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_rama.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_potential.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_potential
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/cmat.o .libs/gmx_rms.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rms
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_rmsdist.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsdist
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_saltbr.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_saltbr
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/gmx_rmsf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rmsf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_rotacf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sgangle.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sgangle
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/nsc.o .libs/gmx_sas.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sas
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sorient.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sorient
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_spol.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spol
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sdf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_sdf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_tcaf
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_spatial.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_spatial
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_traj.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_traj
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_vanhove.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_vanhove
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_velacc
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_clustsize.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_clustsize
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_mdmat.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_mdmat
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_wham.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_wham
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating sigeps
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_kinetics.o  -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte
DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so 
creating g_kinetics
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
Making all in ngmx
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c
../../../src/ngmx/ngmx.c: In function 'dump_xw':
../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int  rc;
        ^~
../../../src/ngmx/ngmx.c: In function 'init_gmx':
../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable]
   int                  step,natom,nre,natom_trx;
                                   ^~~
At top level:
../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function]
 static void dump_xw(char *dispname,Window w,char *fn)
             ^~~~~~~
In file included from ../../../src/ngmx/ngmx.c:52:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/ngmx.c:49:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c
../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function]
 static void Xrm(int *argc, char *argv[])
             ^~~
../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function]
 static Bool TestEvent(Display *disp,XEvent *event,char *arg)
             ^~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c
../../../src/ngmx/fgrid.c: In function 'GetBuf':
../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   int rc;
       ^~
../../../src/ngmx/fgrid.c: In function 'FGridFromFile':
../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable]
   char newinfile[STRLEN];
        ^~~~~~~~~
../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable]
   char *gmxlib;
         ^~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c
In file included from ../../../src/ngmx/logo.c:45:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c
../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function]
 static bool in_set(int i,int n,int set[])
             ^~~~~~
../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function]
 static void Extract(t_dlg *dlg,int ID,char *buf)
             ^~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable]
   int          i,idum;
                  ^~~~
../../../src/ngmx/manager.c: In function 'step_man':
../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable]
   int         dum;
               ^~~
../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable]
   real        rdum;
               ^~~~
In file included from ../../../src/ngmx/manager.c:57:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../include/gstat.h:45,
                 from ../../../src/ngmx/manager.c:56:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/manager.c:55:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
In file included from ../../../src/ngmx/manager.c:48:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
../../../src/ngmx/manager.c: In function 'set_file':
../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=]
   sprintf(buf,"%s: %s",*man->top.name,quote);
                    ^~                 ~~~~~
In file included from /usr/include/stdio.h:862,
                 from ../../../include/sysstuff.h:51,
                 from ../../../src/ngmx/manager.c:40:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __bos (__s), __fmt, __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c
../../../src/ngmx/nmol.c: In function 'draw_box':
../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable]
   iv2  vec2[NCUCEDGE],tv2;
                       ^~~
In file included from ../../../src/ngmx/nmol.c:51:
At top level:
../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function]
 static void m_rveccopy(int dim, rvec *a, rvec *b)
             ^~~~~~~~~~
../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function]
 static void m_rvec_to_one(int dim, rvec *a)
             ^~~~~~~~~~~~~
../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function]
 static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function]
 static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c)
             ^~~~~~~~~
../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function]
 static void calc_lll(rvec box,rvec lll)
             ^~~~~~~~
In file included from ../../../include/vec.h:121,
                 from ../../../src/ngmx/nmol.c:51:
../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function]
 gmx_numzero(double a)
 ^~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c
../../../src/ngmx/molps.c: In function 'ps_draw_mol':
../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable]
   static char tstr[2][20];
               ^~~~
At top level:
../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable]
../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable]
   static int  ntime=0;
               ^~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c
../../../src/ngmx/xrama.c: In function 'main':
../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable]
   t_topology *ramatop;
               ^~~~~~~
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/xrama.c:50:
At top level:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/xrama.c:44:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src  -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g   -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c
In file included from ../../../include/statutil.h:51,
                 from ../../../src/ngmx/highway.c:47:
../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable]
 static char *argtp[etNR] = {
              ^~~~~
In file included from ../../../src/ngmx/highway.c:46:
../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable]
 static const char *GPLText[] = {
                    ^~~~~~~
../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable]
 static const char *CopyrightText[] = {
                    ^~~~~~~~~~~~~
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating xrama
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
mkdir .libs
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating ngmx
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
/bin/sh ../../libtool  --tag=CC   --mode=link mpicc  -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack  -lgslcblas  -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath
DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o  -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath 
creating highway
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
Making all in contrib
make[3]: Nothing to be done for 'all'.
Making all in admin
make[1]: Nothing to be done for 'all'.
Making all in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.csh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.bash
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \
sed 's,@bindir\@,/usr/bin,' | \
sed 's,@datadir\@,/usr/share,' | \
sed 's,@mandir\@,/usr/share/man,'  > GMXRC.zsh
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
Making all in share
Making all in top
make[2]: Nothing to be done for 'all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for 'all'.
Making all in nmr2
make[3]: Nothing to be done for 'all'.
Making all in speptide
make[3]: Nothing to be done for 'all'.
Making all in water
make[3]: Nothing to be done for 'all'.
Making all in gmxdemo
make[3]: Nothing to be done for 'all'.
Making all in methanol
make[3]: Nothing to be done for 'all'.
Making all in mixed
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
Making all in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
cat ../../../share/template/Template.mak | \
sed 's,@LDFLAGS\@,-L/usr/lib64  -lgslcblas ,' | \
sed 's,@LIBS\@,-lmd_mpi_d -lgmx_mpi_d -lgsl  -lfftw3 -lm -lopenblas -llapack  -lSM -lICE -lX11   -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \
sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack   -I/usr/include -I/usr/include/gromacs -DGMX_DOUBLE,' | \
sed 's,@CC\@,mpicc,' | \
sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu_double
sed: -e expression #1, char 36: unknown option to `s'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
Making all in html
Making all in .
make[3]: Nothing to be done for 'all-am'.
Making all in images
make[3]: Nothing to be done for 'all'.
Making all in online
make[3]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for 'all'.
make[2]: Nothing to be done for 'all-am'.
make[1]: Nothing to be done for 'all-am'.
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ exit 0
Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.15431
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ /bin/chmod -Rf u+rwX -- /usr/src/tmp/gromacs-buildroot
+ :
+ /bin/rm -rf -- /usr/src/tmp/gromacs-buildroot
+ PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games
+ cd gromacs-4.0.7
+ export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib'
+ OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib'
+ pushd single
~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
Making install in nb_kernel_x86_64_sse
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmx.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/libgmx.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx.so.5.0.0 libgmx.so.5 || { rm -f libgmx.so.5 && ln -s libgmx.so.5.0.0 libgmx.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx.so.5.0.0 libgmx.so || { rm -f libgmx.so && ln -s libgmx.so.5.0.0 libgmx.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmx.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libmd.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libmd.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
x86_64-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libmd.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd.so.5.0.0 libmd.so.5 || { rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd.so.5.0.0 libmd.so || { rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so; }; })
/usr/libexec/rpm-build/install -p .libs/libmd.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p grompp mdrun tpbconv pdb2gmx protonate luck gmxdump gmxcheck x2top '/usr/src/tmp/gromacs-buildroot/usr/bin'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/grompp
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/protonate
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/luck
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/x2top
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmxana.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libgmxana.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx.la ../mdlib/libmd.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
x86_64-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana.so.5 -o .libs/libgmxana.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libgmxana.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana.so.5.0.0 libgmxana.so.5 || { rm -f libgmxana.so.5 && ln -s libgmxana.so.5.0.0 libgmxana.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana.so.5.0.0 libgmxana.so || { rm -f libgmxana.so && ln -s libgmxana.so.5.0.0 libgmxana.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmxana.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p do_dssp editconf eneconv genbox genconf genrestr g_nmtraj make_ndx mk_angndx trjcat trjconv trjorder wheel xpm2ps genion anadock make_edi g_analyze g_anaeig g_angle g_bond g_bundle g_chi g_cluster g_confrms g_covar g_current g_density g_densmap g_dih g_dielectric g_helixorient g_principal g_dipoles g_disre g_dist g_dyndom g_enemat g_energy g_lie g_filter g_gyrate g_h2order g_hbond g_helix g_mindist g_msd g_morph g_nmeig g_nmens g_order g_polystat g_potential g_rama g_rdf g_rms g_rmsdist g_rmsf g_rotacf g_saltbr g_sas g_sgangle g_sham g_sorient g_spol g_sdf g_spatial g_tcaf g_traj g_vanhove g_velacc g_clustsize g_mdmat g_wham g_kinetics sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin'
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/editconf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/genbox
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/genconf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/wheel
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/genion
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/anadock
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/g_current
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/g_density
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/g_order
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics
libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
libname="libgmxana"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib64"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p ngmx xrama highway '/usr/src/tmp/gromacs-buildroot/usr/bin'
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/xrama
libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/highway
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1'
Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide'
Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water'
Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo'
Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol'
Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor'
Making install in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template'
Making install in html
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images'
Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../man/man1/anadock.1 ../../../man/man1/do_dssp.1 ../../../man/man1/editconf.1 ../../../man/man1/eneconv.1 ../../../man/man1/g_anaeig.1 ../../../man/man1/g_analyze.1 ../../../man/man1/g_angle.1 ../../../man/man1/g_bond.1 ../../../man/man1/g_bundle.1 ../../../man/man1/g_chi.1 ../../../man/man1/g_cluster.1 ../../../man/man1/g_clustsize.1 ../../../man/man1/g_confrms.1 ../../../man/man1/g_covar.1 ../../../man/man1/g_current.1 ../../../man/man1/g_density.1 ../../../man/man1/g_densmap.1 ../../../man/man1/g_dielectric.1 ../../../man/man1/g_dih.1 ../../../man/man1/g_dipoles.1 ../../../man/man1/g_disre.1 ../../../man/man1/g_dist.1 ../../../man/man1/g_dyndom.1 ../../../man/man1/g_enemat.1 ../../../man/man1/g_energy.1 ../../../man/man1/g_filter.1 ../../../man/man1/g_gyrate.1 ../../../man/man1/g_h2order.1 ../../../man/man1/g_hbond.1 ../../../man/man1/g_helix.1 ../../../man/man1/g_helixorient.1 ../../../man/man1/g_kinetics.1 ../../../man/man1/g_lie.1 ../../../man/man1/g_mdmat.1 ../../../man/man1/g_mindist.1 ../../../man/man1/g_morph.1 ../../../man/man1/g_msd.1 ../../../man/man1/g_nmeig.1 ../../../man/man1/g_nmens.1 ../../../man/man1/g_nmtraj.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../man/man1/g_order.1 ../../../man/man1/g_polystat.1 ../../../man/man1/g_potential.1 ../../../man/man1/g_principal.1 ../../../man/man1/g_rama.1 ../../../man/man1/g_rdf.1 ../../../man/man1/g_rms.1 ../../../man/man1/g_rmsdist.1 ../../../man/man1/g_rmsf.1 ../../../man/man1/g_rotacf.1 ../../../man/man1/g_saltbr.1 ../../../man/man1/g_sas.1 ../../../man/man1/g_sdf.1 ../../../man/man1/g_sgangle.1 ../../../man/man1/g_sham.1 ../../../man/man1/g_sorient.1 ../../../man/man1/g_spatial.1 ../../../man/man1/g_spol.1 ../../../man/man1/g_tcaf.1 ../../../man/man1/g_traj.1 ../../../man/man1/g_vanhove.1 ../../../man/man1/g_velacc.1 ../../../man/man1/g_wham.1 ../../../man/man1/gen_table.1 ../../../man/man1/genbox.1 ../../../man/man1/genconf.1 ../../../man/man1/genion.1 ../../../man/man1/genrestr.1 ../../../man/man1/gmxcheck.1 ../../../man/man1/gmxdump.1 ../../../man/man1/grompp.1 ../../../man/man1/highway.1 ../../../man/man1/make_edi.1 ../../../man/man1/make_ndx.1 ../../../man/man1/mdrun.1 ../../../man/man1/mk_angndx.1 ../../../man/man1/ngmx.1 ../../../man/man1/pdb2gmx.1 ../../../man/man1/protonate.1 ../../../man/man1/sigeps.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../man/man1/tpbconv.1 ../../../man/man1/trjcat.1 ../../../man/man1/trjconv.1 ../../../man/man1/trjorder.1 ../../../man/man1/wheel.1 ../../../man/man1/x2top.1 ../../../man/man1/xpm2ps.1 ../../../man/man1/xrama.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ pushd double
~/RPM/BUILD/gromacs-4.0.7/double ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
Making install in nb_kernel_x86_64_sse2
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmx_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/libgmx_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_d.so.5.0.0 libgmx_d.so.5 || { rm -f libgmx_d.so.5 && ln -s libgmx_d.so.5.0.0 libgmx_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_d.so.5.0.0 libgmx_d.so || { rm -f libgmx_d.so && ln -s libgmx_d.so.5.0.0 libgmx_d.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmx_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libmd_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libmd_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
x86_64-alt-linux-gcc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx_d -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_d.so.5 -o .libs/libmd_d.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libmd_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_d.so.5.0.0 libmd_d.so.5 || { rm -f libmd_d.so.5 && ln -s libmd_d.so.5.0.0 libmd_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_d.so.5.0.0 libmd_d.so || { rm -f libmd_d.so && ln -s libmd_d.so.5.0.0 libmd_d.so; }; })
/usr/libexec/rpm-build/install -p .libs/libmd_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmxana_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libgmxana_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_d.la ../mdlib/libmd_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
x86_64-alt-linux-gcc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_d.so.5 -o .libs/libgmxana_d.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libgmxana_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_d.so.5.0.0 libgmxana_d.so.5 || { rm -f libgmxana_d.so.5 && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_d.so.5.0.0 libgmxana_d.so || { rm -f libgmxana_d.so && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmxana_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_d'
libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_d
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
libname="libgmxana_d"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib64"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_d'
libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1'
Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide'
Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water'
Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_d'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo'
Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol'
Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
make[4]: Nothing to be done for 'install-exec-am'.
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make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor'
Making install in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu_double '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template'
Making install in html
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html'
Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images'
Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online'
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Making install in man
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Making install in man1
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_d.1'
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 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_d.1'
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make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ pushd mpi-single
~/RPM/BUILD/gromacs-4.0.7/mpi-single ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
Making install in nb_kernel_x86_64_sse
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmx_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/libgmx_mpi.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi.so.5.0.0 libgmx_mpi.so.5 || { rm -f libgmx_mpi.so.5 && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi.so.5.0.0 libgmx_mpi.so || { rm -f libgmx_mpi.so && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmx_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libmd_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libmd_mpi.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx_mpi -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi.so.5 -o .libs/libmd_mpi.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi.so.5.0.0 libmd_mpi.so.5 || { rm -f libmd_mpi.so.5 && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi.so.5.0.0 libmd_mpi.so || { rm -f libmd_mpi.so && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so; }; })
/usr/libexec/rpm-build/install -p .libs/libmd_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmxana_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libgmxana_mpi.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi.la ../mdlib/libmd_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi.so.5 -o .libs/libgmxana_mpi.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libgmxana_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5 || { rm -f libgmxana_mpi.so.5 && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi.so.5.0.0 libgmxana_mpi.so || { rm -f libgmxana_mpi.so && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmxana_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi'
libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
libname="libgmxana_mpi"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib64"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi'
libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1'
Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide'
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Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
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Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_mpi'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo'
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Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol'
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Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
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make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed'
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make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor'
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Making install in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template'
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Making install in html
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html'
Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
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Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images'
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 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images'
Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[3]: Nothing to be done for 'install-exec-am'.
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make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_mpi.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_mpi.1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ pushd mpi-double
~/RPM/BUILD/gromacs-4.0.7/mpi-double ~/RPM/BUILD/gromacs-4.0.7
+ make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot
make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
Making install in include
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
Making install in .
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
 /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
Making install in types
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
 /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include'
Making install in src
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
Making install in gmxlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
Making install in nonbonded
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
Making install in nb_kernel_x86_64_sse2
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2'
Making install in nb_kernel
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make  install-am
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[6]: Nothing to be done for 'install-exec-am'.
make[6]: Nothing to be done for 'install-data-am'.
make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded'
Making install in gmx_blas
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas'
Making install in gmx_lapack
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmx_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/libgmx_mpi_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5 || { rm -f libgmx_mpi_d.so.5 && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so || { rm -f libgmx_mpi_d.so && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmx_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib'
Making install in mdlib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libmd_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libmd_mpi_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx_mpi_d -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi_d.so.5 -o .libs/libmd_mpi_d.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5 || { rm -f libmd_mpi_d.so.5 && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi_d.so.5.0.0 libmd_mpi_d.so || { rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so; }; })
/usr/libexec/rpm-build/install -p .libs/libmd_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[4]: Nothing to be done for 'install-exec-hook'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib'
Making install in kernel
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel'
Making install in tools
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64'
 /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p   libgmxana_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64'
libtool: install: warning: relinking `libgmxana_mpi_d.la'
(cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools; /bin/sh ../../libtool  --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi_d.la ../mdlib/libmd_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot)  
mpicc -shared  .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o  -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte  -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.5 -o .libs/libgmxana_mpi_d.so.5.0.0
/usr/libexec/rpm-build/install -p .libs/libgmxana_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5 || { rm -f libgmxana_mpi_d.so.5 && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5; }; })
(cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so || { rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so; }; })
/usr/libexec/rpm-build/install -p .libs/libgmxana_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi_d'
libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi_d
make  install-exec-hook
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
libname="libgmxana_mpi_d"; \
nompi="`echo $libname | sed -e 's,_mpi,,'`"; \
libdir="/usr/lib64"; \
if echo $libname | grep mpi >/dev/null ; then \
  (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \
  (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \
fi; 
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools'
Making install in ngmx
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi_d
  /bin/sh ../../libtool   --mode=install /usr/libexec/rpm-build/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi_d'
libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64'
libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64'
/usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi_d
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx'
Making install in contrib
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src'
Making install in admin
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin'
Making install in scripts
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin'
 /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts'
Making install in share
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
Making install in top
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top'
Making install in tutor
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
Making install in nmr1
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1'
Making install in nmr2
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2'
Making install in speptide
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide'
Making install in water
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water'
Making install in gmxdemo
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo'
 /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_mpi_d'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo'
Making install in methanol
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol'
Making install in mixed
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor'
Making install in template
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu_double '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template'
Making install in html
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
Making install in .
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
 /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
Making install in images
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images'
Making install in online
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
make[4]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
 /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online'
make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share'
Making install in man
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
Making install in man1
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[3]: Nothing to be done for 'install-exec-am'.
 /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_mpi_d.1'
 /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_mpi_d.1'
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man'
make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make  install-exec-hook
make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'

GROMACS is installed under /usr.
Make sure to update your PATH and MANPATH to find the
programs and unix manual pages, and possibly LD_LIBRARY_PATH
or /etc/ld.so.conf if you are using dynamic libraries.

Please run "make tests" now to verify your installation.

If you want links to the executables in /usr/local/bin,
you can issue "make links" now.
make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double'
+ popd
~/RPM/BUILD/gromacs-4.0.7
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genion /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genion_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/highway /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/highway_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/luck /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/luck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d
+ for bin in demux.pl xplor2gmx.pl
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/demux.pl /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl
+ for bin in demux.pl xplor2gmx.pl
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/xplor2gmx.pl /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl
+ for mpibin in mdrun
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anadock.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anadock_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_do_dssp.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_do_dssp_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_editconf.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_editconf_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_eneconv.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_eneconv_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genbox.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genbox_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genconf.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genconf_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genion.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genion_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genrestr.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genrestr_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxcheck.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxcheck_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxdump.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxdump_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_grompp.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_grompp_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_highway.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_highway_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_edi.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_edi_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_ndx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_ndx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdrun.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdrun_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mk_angndx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mk_angndx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_ngmx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_ngmx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_pdb2gmx.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_pdb2gmx_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_protonate.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_protonate_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sigeps.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sigeps_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tpbconv.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tpbconv_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjcat.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjcat_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjconv.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjconv_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjorder.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjorder_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wheel.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wheel_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_x2top.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_x2top_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xpm2ps.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xpm2ps_d.1
+ for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xrama.1
+ mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xrama_d.1
+ chmod a-x /usr/src/tmp/gromacs-buildroot/usr/bin/completion.bash /usr/src/tmp/gromacs-buildroot/usr/bin/completion.csh /usr/src/tmp/gromacs-buildroot/usr/bin/completion.zsh
+ mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/zsh/site-functions
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.zsh /usr/src/tmp/gromacs-buildroot/usr/share/zsh/site-functions/gromacs
+ mkdir -p /usr/src/tmp/gromacs-buildroot/etc/bash_completion.d
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.bash /usr/src/tmp/gromacs-buildroot/etc/bash_completion.d/gromacs
+ mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.csh .
+ rm -rf /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx_mpi_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana_mpi_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd_mpi_d.la
+ mv mpi-single/src/mdlib/.libs/libmd_mpi.so mpi-single/src/mdlib/.libs/libmd_mpi.so.5 mpi-single/src/mdlib/.libs/libmd_mpi.so.5.0.0 mpi-single/src/mdlib/.libs/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/
+ mv mpi-double/src/mdlib/.libs/libmd_mpi_d.so mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5 mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5.0.0 mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.bash
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.bash' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.csh
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.csh' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.zsh
`/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.zsh' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl
`/usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl
`/usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl' probably isn't an ELF file.
elf_open: Exec format error
+ :
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0T
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0T: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0T: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib
+ for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.*
+ chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0T
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0T: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib
/usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0T: new RPATH: /usr/lib64/openmpi/lib
+ /usr/lib/rpm/brp-alt
Cleaning files in /usr/src/tmp/gromacs-buildroot (auto)
mode of './usr/lib64/libmd_mpi_d.so.5.0.0T' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libmd_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libmd_mpi.so.5.0.0T' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libmd_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmxana_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmx_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmxana_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmx_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmxana_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libmd_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmx_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmxana.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libmd.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib64/libgmx.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
Verifying and fixing files in /usr/src/tmp/gromacs-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig)
Checking contents of files in /usr/src/tmp/gromacs-buildroot/ (default)
Compressing files in /usr/src/tmp/gromacs-buildroot (auto)
Adjusting library links in /usr/src/tmp/gromacs-buildroot
./usr/lib64:
	libgmx.so.5 -> libgmx.so.5.0.0
	libmd.so.5 -> libmd.so.5.0.0
	libgmxana.so.5 -> libgmxana.so.5.0.0
	libgmx_d.so.5 -> libgmx_d.so.5.0.0
	libmd_d.so.5 -> libmd_d.so.5.0.0
	libgmxana_d.so.5 -> libgmxana_d.so.5.0.0
	libgmx_mpi.so.5 -> libgmx_mpi.so.5.0.0
	libgmxana_mpi.so.5 -> libgmxana_mpi.so.5.0.0
	libgmx_mpi_d.so.5 -> libgmx_mpi_d.so.5.0.0
	libgmxana_mpi_d.so.5 -> libgmxana_mpi_d.so.5.0.0
	libmd_mpi.so.5 -> libmd_mpi.so.5.0.0T (changed)
	libmd_mpi_d.so.5 -> libmd_mpi_d.so.5.0.0T (changed)
Verifying ELF objects in /usr/src/tmp/gromacs-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal)
verify-elf: WARNING: ./usr/bin/g_mdrun_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdrun_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xrama_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xrama: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xpm2ps_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_xpm2ps: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_x2top_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_x2top: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wheel_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wheel: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjorder_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjorder: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjconv_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjconv: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjcat_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_trjcat: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tpbconv_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tpbconv: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sigeps_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sigeps: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_protonate_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_protonate: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_pdb2gmx_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_pdb2gmx: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_ngmx_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_ngmx: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mk_angndx_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mk_angndx: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdrun_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdrun: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_ndx_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_ndx: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_edi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_make_edi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_luck_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_luck: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_highway_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_highway: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_grompp_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_grompp: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxdump_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxdump: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxcheck_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gmxcheck: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genrestr_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genrestr: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genion_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genion: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genconf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genconf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genbox_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_genbox: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_eneconv_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_eneconv: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_editconf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_editconf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_do_dssp_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_do_dssp: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anadock_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anadock: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/highway_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/xrama_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/ngmx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/sigeps_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_edi_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/anadock_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genion_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/xpm2ps_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/wheel_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjorder_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjconv_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjcat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/mk_angndx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_ndx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genrestr_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genconf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genbox_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/eneconv_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/editconf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/do_dssp_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/x2top_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxcheck_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxdump_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/luck_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/protonate_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/pdb2gmx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/tpbconv_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/grompp_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/highway_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/xrama_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/ngmx_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/sigeps_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_edi_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/anadock_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genion_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/xpm2ps_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/wheel_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjorder_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjconv_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/trjcat_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/mk_angndx_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/make_ndx_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genrestr_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genconf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/genbox_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/eneconv_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/editconf_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/do_dssp_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/x2top_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxcheck_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/gmxdump_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/luck_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/protonate_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/pdb2gmx_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/tpbconv_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/grompp_mpi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj_d: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_kinetics: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_wham: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mdmat: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_clustsize: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_velacc: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_vanhove: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_traj: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_tcaf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spatial: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sdf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_spol: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sorient: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sham: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sgangle: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_sas: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_saltbr: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rotacf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rmsdist: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rms: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rdf: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_rama: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_potential: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_polystat: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_order: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmens: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmeig: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_morph: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_msd: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_mindist: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helix: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_hbond: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_h2order: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_gyrate: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_filter: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_lie: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_energy: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_enemat: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dyndom: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dist: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_disre: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dipoles: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_principal: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_helixorient: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dielectric: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_dih: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_densmap: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_density: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_current: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_covar: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_confrms: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_cluster: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_chi: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bundle: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_bond: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_angle: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_anaeig: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_analyze: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/bin/g_nmtraj: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libmd_mpi_d.so.5.0.0T: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libmd_mpi_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libmd_mpi.so.5.0.0T: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libmd_mpi.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmxana_mpi_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmx_mpi_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmxana_mpi.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmx_mpi.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmxana_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libmd_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmx_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmxana.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libmd.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
verify-elf: WARNING: ./usr/lib64/libgmx.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib
Hardlinking identical .pyc and .pyo files
Processing files: gromacs-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.WO1Zkd
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Nti4MB
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: overlinked libraries: /usr/lib64/libopenblas.so.0
/usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl syntax OK
/usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl syntax OK
Requires: gromacs-common = 4.0.7-alt8, /lib64/ld-linux-x86-64.so.2, /usr/bin/perl, libX11.so.6()(64bit) >= set:oiUgZmS1kvNxeWShD68IxxrZhWBJAmK824Jj27NZBiKhya7QJH2a20VekdqAOTaWymJYl3wBk2x1BdP2D3AgbBsEp3LisNUqVJRjZb3QbeyZoGS9M0ZwMaWyM9oEAYyr5ACLNAIN6, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libgmx.so.5()(64bit) >= set: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, libgmx_d.so.5()(64bit) >= set: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, libgmx_mpi.so.5()(64bit) >= set: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, libgmx_mpi_d.so.5()(64bit) >= set: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, libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, libm.so.6(GLIBC_2.2.5)(64bit), libmd.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_mpi.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3, libmd_mpi_d.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3, libopenblas.so.0()(64bit), rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.S9TiyS
Creating gromacs-debuginfo package
Processing files: gromacs-libs-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.fRNrHp
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5: 1348 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5: 1348 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5: 322 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5: 322 symbols, 19 bpp
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.K6gWWZ
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0
Provides: libgmx.so.5()(64bit) = set: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, libgmx_d.so.5()(64bit) = set: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, libgmxana.so.5()(64bit) = set:mdcRcdb3bg3YlKrz6hPWO7Mm31MGzVMITMWw135dqe9ym2Om44sGQs3Ze4ZgzG3LZ5Ywfdm4sOMpwthOpqGO6y7VBgkjUzXQ9y4Qt0tvllx5RmgoF6wk50uXUQqs2yNHyUZ60Xg9oym1vGApnaxKWOWyagi7657L4d56GZHLAeXmcQ6qi7KsNWhQKrlfbPKU10Pgg5lmU7rqG7wgw712ab7zDpiZwd8NFWti4yNjHMl1m8ARE3P1K1ABcuOzybbImuVEgacUEqk4o56Aoyd92XVmqXquzu1ZLVl46kFiUqbRRhrDYWfCZtgKa6SNYM5pKKHHdwSSlKZeHRh282RnwsplMlGKPKgK3oWaynFtfI62YZguKBqQL0INFXIuKJbRNEGFSnZqtZzy2GW8koTTxYqKuxyQPJVyPDPOf8DftcD7s3LSsZoBZF9t5dI8zmrjmMX1MY229wekoxmjU5lb8ZgWXZt5kb06mtBLzFee5kOZKdbVnzM9mW2eG4I4Wr5hQES8JLja5wGjvBvJcY8cAZ86PjxRDWZ9mfqkBbrlaevKOhkA06ZhZc4q2L1qZh6CvLZEv8A36GQ2IBfDM0QQY6HaMKYTkVlNP49WwfZudQrfMCXYtfgas7bcQmsonxSTNQZcvZ0ImLeZpgslay6gceqxR44USZqWx4kv6bwLWp7r91ec1ne9Of2, libgmxana_d.so.5()(64bit) = set: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, libmd.so.5()(64bit) = set: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, libmd_d.so.5()(64bit) = set:mdcMDmiV08Ub4uLzNZbTiwFTNiWlLc5YyUs3XfB5nS9wNqZ4XNo0f7uZEBRvSdw5uE2Rzr5fS8GhURGWZfvA16KBAMAF7kKQvk5B1sPqk4B6nEWw2fH3BZgZdGAlXEZvDhj6qxNujhUIk3yTEiDqWR0R2FfvMNCj4Af0X6us85NIOxwNymrQ36nef932FkLfOSo9dDJMoIoM5fGw5z569nAlrWXapvQJMRab3SHT1wyOxSoYg95t48yRSy1ZLac8Yl5KfnIAzPZvKBJ2l7QJ30XmY6OHAyV7x0kICB1jhyjHto3QmQIbKRgHjffHLdjJH6FqRQIjcuhy8ls2sr693murmIY1Bxc05nMFEpwn9JKZfXRCOnJ9QN9NXSvtZ2UqOhW2ecgEuGJ9HjFoq5cyE1UT298SIXbihFVhs6t72lZnbHDel8mDDLvDayRotwikrg6ow3LzceNKZ64Kmm25u3uX5JSmqsx9U5Ia05fUl8yGp5jyUW4LfgY0HZ0GmBzjDMsNNlNAVhPU4VZs8XMlEI83BVSDsS8JTXiGyywWVQQxsxHBlraPaZ5DEu0UzVpNvkmiNcKxCf74vVESYjtIShGljVCkeGRWJW6O0S4ZA0W8D1wL4slsyAsizEf3eIqLYDZk5a91moZb2L2Vehe
Requires: gromacs-common = 4.0.7-alt8, libc.so.6(GLIBC_2.11)(64bit), libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1, libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3, libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, liblapack.so.4()(64bit) >= set:omax1kCj8, libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.27)(64bit), libopenblas.so.0()(64bit), rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lhQtWF
Creating gromacs-libs-debuginfo package
Processing files: gromacs-mpi-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ujsUhp
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FaIvWb
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Requires: gromacs-common = 4.0.7-alt8, /lib64/ld-linux-x86-64.so.2, /usr/lib64/openmpi/lib/libmpi.so.20, libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libgmx_mpi.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBHR8OngUbBLqumY4FxnK7pA8OsqZI5wyRNu986lgUnKnadfOpHWgnNHFWb7LqrPdmivKHv8j7JzKsZ2cG5aHmTGxZclJVfpcMvSxVFEtoJKNC0QjdahuN07q5ZtUWzVNZcaY0oY0UWqGrPa41, libgmx_mpi_d.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBbiCavFYlPPyD8dYOZ8ci4peJvK0kIeSb1NE22ZyTbBC7VIltEHURkZ5euRSCrIAZstZ3AFzShnKuxhJgpRWmdIDHqPvOowZIecf5J3HRdS4wuGh9Ob6UgHet6OMDZoVNZcaY0oY0UWqGrPa41, libm.so.6(GLIBC_2.2.5)(64bit), libmd_mpi.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_mpi_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN, rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.QzLeT1
Creating gromacs-mpi-debuginfo package
Processing files: gromacs-common-4.0.7-alt8
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.77232
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
+ DOCDIR=/usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ export DOCDIR
+ rm -rf /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ /bin/mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ cp -prL AUTHORS COPYING README /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ chmod -R go-w /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ chmod -R a+rX /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.V3ks3V
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.iltBPT
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Processing files: gromacs-devel-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.93bp2U
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.a4ofCZ
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h:45:10: fatal error: sheader.h: No such file or directory
 #include "sheader.h"
          ^~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h: cpp failed, trying c++ mode
/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h:45:10: fatal error: sheader.h: No such file or directory
 #include "sheader.h"
          ^~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h: cpp failed
Requires: gromacs-common = 4.0.7-alt8, gromacs-libs = 4.0.7-alt8, /usr/lib64/libgmx.so.5.0.0, /usr/lib64/libgmx_d.so.5.0.0, /usr/lib64/libgmxana.so.5.0.0, /usr/lib64/libgmxana_d.so.5.0.0, /usr/lib64/libmd.so.5.0.0, /usr/lib64/libmd_d.so.5.0.0
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.BxKhyv
Processing files: gromacs-mpi-devel-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.csZuA4
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.xIX1IG
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Requires: gromacs-mpi-libs = 4.0.7-alt8, gromacs-devel = 4.0.7-alt8, /usr/lib64/libgmx_mpi.so.5.0.0, /usr/lib64/libgmx_mpi_d.so.5.0.0, /usr/lib64/libgmxana_mpi.so.5.0.0, /usr/lib64/libgmxana_mpi_d.so.5.0.0, /usr/lib64/libmd_mpi.so.5.0.0, /usr/lib64/libmd_mpi_d.so.5.0.0
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.AL1OXl
Processing files: gromacs-mpi-libs-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Jdfam4
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5: 1348 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5: 1348 symbols, 21 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: 341 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5: 328 symbols, 19 bpp
lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5: 328 symbols, 19 bpp
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ca1cQP
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0
lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0
Provides: libgmx_mpi.so.5()(64bit) = set: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, libgmx_mpi_d.so.5()(64bit) = set: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, libgmxana_mpi.so.5()(64bit) = set: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, libgmxana_mpi_d.so.5()(64bit) = set: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, libmd_mpi.so.5()(64bit) = set:mdcMDmiV08Ub4uLzNZbTiwFTNGEGkEnC2uhsKxZ7abKIj0zRWFZ8N0ueYZhbHZIK1IM3lKEZutHUN6hd2LmlLZLzcRgUNki2jCugViZxlhp0TI65hFN5GeEMPWgFfQTGAlXEZvDhj6qxNujhUIk3yTEiDqWR0R2FfvMN6Uz1SdYUgaypB31z5JSE7cKsui64iFuvAJNiqerxNoNwbuk1b6bciK8HSQTlOZoK5KmppMuZe0ghVgrcuEAye24NqrNwZD564ZqasvKo97DZftbr5GeEr70SJUdAn95Pf21Eodb3Cy4DmXM6EJEpnsHxmDuumvrCqndiRGFpDoYy4hGU4USci6IYSIoV3a3p0aKwjhPM7y85JKZfXRCOnJ9QN9NXSvtZ2UqOhW2ecgEuGJ9HjFoq5cyE1UT298SIXbihFVhs6t72lZnbHDel8mDDLvDayRotwikrg6ow3LzceNKZ64Kmm25u3uX5PAZ8JQU2jMbol0auMHg4lPaC4NR9uvwU1mX1lHONFjoKUUGoOYEpsysv6p7K2B5pEcTZkerASXt9lhhgZcFF3V2ZGZBJqjpmFLehZ00vcfbZjabFo6TgPD3yLskrZpWoJzkHCOdFskHRrRdA1I9Zp0Qhe30v9UGU49VA6hvm077qJnZjZ9aki2IMWnxnxsD87, libmd_mpi_d.so.5()(64bit) = set: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
Requires: gromacs-common = 4.0.7-alt8, /usr/lib64/openmpi/lib/libmpi.so.20, libc.so.6(GLIBC_2.11)(64bit), libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1, libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3, libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, liblapack.so.4()(64bit) >= set:omax1kCj8, libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.27)(64bit), libopenblas.so.0()(64bit), libpthread.so.0(GLIBC_2.2.5)(64bit), rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.HjZOGJ
Creating gromacs-mpi-libs-debuginfo package
Processing files: gromacs-shell-extensions-4.0.7-alt8
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.78443
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd gromacs-4.0.7
+ DOCDIR=/usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ export DOCDIR
+ rm -rf /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ /bin/mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ cp -prL completion.csh /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ chmod -R go-w /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ chmod -R a+rX /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.EhCc8G
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.R5bjFH
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Obsoletes: gromacs-bash, gromacs-zsh, gromacs-csh
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ChxJiL
Processing files: gromacs-tutor-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.fZUC2R
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.cbJaS1
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Requires: /bin/csh
Processing files: gromacs-doc-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VxEJOe
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.U44vRu
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Processing files: gromacs-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.36anpO
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.m8lwLc
find-requires: running scripts (debuginfo)
Requires: gromacs = 4.0.7-alt8, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libX11.so.6), debug64(libc.so.6), debug64(libgmx.so.5), debug64(libgmx_d.so.5), debug64(libgmx_mpi.so.5), debug64(libgmx_mpi_d.so.5), debug64(libgsl.so.23), debug64(libm.so.6), debug64(libmd.so.5), debug64(libmd_d.so.5), debug64(libmd_mpi.so.5), debug64(libmd_mpi_d.so.5), debug64(libopenblas.so.0)
Processing files: gromacs-libs-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.1yCz5x
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.WPxNEW
find-requires: running scripts (debuginfo)
Provides: debug64(libgmx.so.5), debug64(libgmx_d.so.5), debug64(libgmxana.so.5), debug64(libgmxana_d.so.5), debug64(libmd.so.5), debug64(libmd_d.so.5)
Requires: gromacs-libs = 4.0.7-alt8, debug64(libc.so.6), debug64(libfftw3.so.3), debug64(libfftw3f.so.3), debug64(libgsl.so.23), debug64(liblapack.so.4), debug64(libm.so.6), debug64(libopenblas.so.0)
Processing files: gromacs-mpi-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LbH5dr
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0UbwTY
find-requires: running scripts (debuginfo)
Requires: gromacs-mpi = 4.0.7-alt8, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.20.debug, debug64(libc.so.6), debug64(libgmx_mpi.so.5), debug64(libgmx_mpi_d.so.5), debug64(libm.so.6), debug64(libmd_mpi.so.5), debug64(libmd_mpi_d.so.5)
Processing files: gromacs-mpi-libs-debuginfo-4.0.7-alt8
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.10Ns0z
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.apZBne
find-requires: running scripts (debuginfo)
Provides: debug64(libgmx_mpi.so.5), debug64(libgmx_mpi_d.so.5), debug64(libgmxana_mpi.so.5), debug64(libgmxana_mpi_d.so.5), debug64(libmd_mpi.so.5), debug64(libmd_mpi_d.so.5)
Requires: gromacs-mpi-libs = 4.0.7-alt8, /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.20.debug, debug64(libc.so.6), debug64(libfftw3.so.3), debug64(libfftw3f.so.3), debug64(libgsl.so.23), debug64(liblapack.so.4), debug64(libm.so.6), debug64(libopenblas.so.0), debug64(libpthread.so.0)
Adding to gromacs a strict dependency on gromacs-libs
Adding to gromacs a strict dependency on gromacs-mpi-libs
Adding to gromacs-mpi a strict dependency on gromacs-mpi-libs
Adding to gromacs-debuginfo a strict dependency on gromacs-libs-debuginfo
Adding to gromacs-debuginfo a strict dependency on gromacs-mpi-libs-debuginfo
Adding to gromacs-mpi-debuginfo a strict dependency on gromacs-mpi-libs-debuginfo
Removing from gromacs-debuginfo 204 sources provided by gromacs-libs-debuginfo
also prunning dir /usr/src/debug/gromacs-4.0.7/include/types
Removing from gromacs-mpi-debuginfo 80 sources provided by gromacs-mpi-libs-debuginfo
also prunning dir /usr/src/debug/gromacs-4.0.7/include/types
Removing 4 extra deps from gromacs due to dependency on gromacs-libs
Removing 4 extra deps from gromacs due to dependency on gromacs-mpi-libs
Removing 6 extra deps from gromacs-devel due to dependency on gromacs-libs
Removing 5 extra deps from gromacs-mpi due to dependency on gromacs-mpi-libs
Removing 6 extra deps from gromacs-mpi-devel due to dependency on gromacs-mpi-libs
Removing 4 extra deps from gromacs-debuginfo due to dependency on gromacs-libs-debuginfo
Removing 4 extra deps from gromacs-debuginfo due to dependency on gromacs-mpi-libs-debuginfo
Removing 4 extra deps from gromacs-mpi-debuginfo due to dependency on gromacs-mpi-libs-debuginfo
Removing 12 extra deps from gromacs due to repentancy on gromacs-libs
Removing 1 extra deps from gromacs-devel due to repentancy on gromacs-libs
Removing 8 extra deps from gromacs-mpi due to repentancy on gromacs-mpi-libs
Removing 4 extra deps from gromacs-debuginfo due to repentancy on gromacs-libs-debuginfo
Removing 3 extra deps from gromacs-mpi-debuginfo due to repentancy on gromacs-mpi-libs-debuginfo
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-4.0.7-alt8.x86_64.rpm (w2T8.xzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-libs-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/noarch/gromacs-common-4.0.7-alt8.noarch.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-devel-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-devel-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-libs-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-shell-extensions-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/noarch/gromacs-tutor-4.0.7-alt8.noarch.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/noarch/gromacs-doc-4.0.7-alt8.noarch.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-debuginfo-4.0.7-alt8.x86_64.rpm (w2T8.xzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-libs-debuginfo-4.0.7-alt8.x86_64.rpm (w2T8.xzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-debuginfo-4.0.7-alt8.x86_64.rpm (w2.lzdio)
Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-libs-debuginfo-4.0.7-alt8.x86_64.rpm (w2T8.xzdio)
838.83user 405.59system 6:53.33elapsed 301%CPU (0avgtext+0avgdata 207948maxresident)k
0inputs+0outputs (0major+116219062minor)pagefaults 0swaps
852.77user 411.57system 7:12.68elapsed 292%CPU (0avgtext+0avgdata 207948maxresident)k
7336inputs+0outputs (34779major+117052613minor)pagefaults 0swaps
--- gromacs-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.216496008 +0000
@@ -354,3 +354,2 @@
 /usr/bin/xrama_mpi_d	100755	root:root	
-Requires: gromacs-common = 4.0.7-alt8
 Requires: /lib64/ld-linux-x86-64.so.2  
@@ -358,20 +357,4 @@
 Requires: libX11.so.6()(64bit) >= set:oiUgZmS1kvNxeWShD68IxxrZhWBJAmK824Jj27NZBiKhya7QJH2a20VekdqAOTaWymJYl3wBk2x1BdP2D3AgbBsEp3LisNUqVJRjZb3QbeyZoGS9M0ZwMaWyM9oEAYyr5ACLNAIN6
-Requires: rpmlib(SetVersions)  
-Requires: libc.so.6(GLIBC_2.2.5)(64bit)  
-Requires: libc.so.6(GLIBC_2.3)(64bit)  
-Requires: libc.so.6(GLIBC_2.3.4)(64bit)  
-Requires: libc.so.6(GLIBC_2.4)(64bit)  
-Requires: libc.so.6(GLIBC_2.7)(64bit)  
-Requires: libgmx.so.5()(64bit) >= set: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
-Requires: libgmx_d.so.5()(64bit) >= set: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
-Requires: libgmx_mpi.so.5()(64bit) >= set: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
-Requires: libgmx_mpi_d.so.5()(64bit) >= set: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
-Requires: libgsl.so.0()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
-Requires: libm.so.6(GLIBC_2.2.5)(64bit)  
-Requires: libmd.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: libmd_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: libmd_mpi.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3
-Requires: libmd_mpi_d.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3
-Requires: libpthread.so.0(GLIBC_2.2.5)(64bit)  
-Requires: rtld(GNU_HASH)  
+Requires: gromacs-libs = 4.0.7-alt8
+Requires: gromacs-mpi-libs = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
@@ -380,354 +363,354 @@
 File: /usr/bin/GMXRC.bash	100755	root:root	4fe2ba04661499f1fd97f0cf5a69cb87	
-File: /usr/bin/anadock_mpi	100755	root:root	27edb58cf8b643c999a4f16eabee1f8e	
-File: /usr/bin/anadock_mpi_d	100755	root:root	726280727bdc366e4158e2734db9f155	
-File: /usr/bin/do_dssp_mpi	100755	root:root	9fd14face783c17beff40e48ce96d6ad	
-File: /usr/bin/do_dssp_mpi_d	100755	root:root	2411a552d235d40449dcb5ecc400bce3	
-File: /usr/bin/editconf_mpi	100755	root:root	f3bf2612153498ef5402af0403d298c4	
-File: /usr/bin/editconf_mpi_d	100755	root:root	68f47c1ab1dfa96e6ec637abdcf11bd2	
-File: /usr/bin/eneconv_mpi	100755	root:root	096a3622d6d73d3ff79977e2121502e3	
-File: /usr/bin/eneconv_mpi_d	100755	root:root	37a27e343a95411a82bc1bfc90206a85	
-File: /usr/bin/g_anadock	100755	root:root	c25501df23b7a8d985f68f22ac900e3a	
-File: /usr/bin/g_anadock_d	100755	root:root	42fd99e6e46ee1695439052c38d353e9	
-File: /usr/bin/g_anaeig	100755	root:root	13f911c7e894aab40e9c3f140643ba53	
-File: /usr/bin/g_anaeig_d	100755	root:root	bfc58674ac82e2ad2358242f1e6747ce	
-File: /usr/bin/g_anaeig_mpi	100755	root:root	e843e0237cc793e6ea258eb599bc400b	
-File: /usr/bin/g_anaeig_mpi_d	100755	root:root	1f99ee6c3af6f67196ec5687cec98c47	
-File: /usr/bin/g_analyze	100755	root:root	d413f328215e0a5fe9656443a2cc54a5	
-File: /usr/bin/g_analyze_d	100755	root:root	efbfa12051e6ee217ca7d7aa470348af	
-File: /usr/bin/g_analyze_mpi	100755	root:root	fd896d6afc6981b6be5338d67865c790	
-File: /usr/bin/g_analyze_mpi_d	100755	root:root	43ad70f7302fa0845ba85d8ba0c73cc5	
-File: /usr/bin/g_angle	100755	root:root	a51b92dd949f7c5d1df865dee0ed5395	
-File: /usr/bin/g_angle_d	100755	root:root	421ff37cb5d98d63691ff82dcbc0f026	
-File: /usr/bin/g_angle_mpi	100755	root:root	ad6b8e3d156982f20e3ac80d971eabed	
-File: /usr/bin/g_angle_mpi_d	100755	root:root	df91f27c7af4424b2c9d5274d1506418	
-File: /usr/bin/g_bond	100755	root:root	b146376ab2774fd234d2e6294c417337	
-File: /usr/bin/g_bond_d	100755	root:root	88b9c3a996e9b228cc2e0be07082cd83	
-File: /usr/bin/g_bond_mpi	100755	root:root	164108b488bc5454ad8438fb95e587d0	
-File: /usr/bin/g_bond_mpi_d	100755	root:root	74544adc3c4496569619c978979830dc	
-File: /usr/bin/g_bundle	100755	root:root	e6d3f728d00b2d311fc179d031de6b7a	
-File: /usr/bin/g_bundle_d	100755	root:root	6c8c7f57179cba39fda3657b316fc159	
-File: /usr/bin/g_bundle_mpi	100755	root:root	25a098d4384df43694789059225b26eb	
-File: /usr/bin/g_bundle_mpi_d	100755	root:root	07a88d9b3af16d0ff8a6659affae85fb	
-File: /usr/bin/g_chi	100755	root:root	dc01344640b70a7671cbed4d1e6035e4	
-File: /usr/bin/g_chi_d	100755	root:root	d0c73e3bf123824b7435a28139fe6a88	
-File: /usr/bin/g_chi_mpi	100755	root:root	632b78da27977caa17f0b6ef66238266	
-File: /usr/bin/g_chi_mpi_d	100755	root:root	939b12f3e7b2dd1bdb67e85fcfbdf2f2	
-File: /usr/bin/g_cluster	100755	root:root	21c80031d44074041a26a0346128853c	
-File: /usr/bin/g_cluster_d	100755	root:root	59699f2216d78e851599c1c96537358d	
-File: /usr/bin/g_cluster_mpi	100755	root:root	ce59c1f799138efdcd971add57f9de87	
-File: /usr/bin/g_cluster_mpi_d	100755	root:root	48e854b4ed752c2d8392d314b25a6258	
-File: /usr/bin/g_clustsize	100755	root:root	d0774f3548361a00b305b08011b1e0ce	
-File: /usr/bin/g_clustsize_d	100755	root:root	ce8fb82ddc8d1bf398704e5bcfa09832	
-File: /usr/bin/g_clustsize_mpi	100755	root:root	d6ce888505f19067428f866109f34a43	
-File: /usr/bin/g_clustsize_mpi_d	100755	root:root	55f195e532a30ee58a55f505c6889c2f	
-File: /usr/bin/g_confrms	100755	root:root	872b41888d05024db271355dcbdd6d43	
-File: /usr/bin/g_confrms_d	100755	root:root	1ed9cbb2c0168e802b1326381a485e34	
-File: /usr/bin/g_confrms_mpi	100755	root:root	e5a2bf0853f384a06feda020bc6ad038	
-File: /usr/bin/g_confrms_mpi_d	100755	root:root	244d0075c5016d91f54c5a30c14194f7	
-File: /usr/bin/g_covar	100755	root:root	e2086234f587a7e3d291dda6528a315d	
-File: /usr/bin/g_covar_d	100755	root:root	09df1c741c600116c1320b1e1094cda7	
-File: /usr/bin/g_covar_mpi	100755	root:root	fb40b65103774848734fe9fec9e889fe	
-File: /usr/bin/g_covar_mpi_d	100755	root:root	ef5719cd08fe481cf9b6f13b1248e97d	
-File: /usr/bin/g_current	100755	root:root	a84dd13426c35d17495bf40b30b17478	
-File: /usr/bin/g_current_d	100755	root:root	97f8c44c43cd42035dc9107bb37663cc	
-File: /usr/bin/g_current_mpi	100755	root:root	8512e5436a7056be4660e708685c5e3b	
-File: /usr/bin/g_current_mpi_d	100755	root:root	c798008858a450a56e615a8835bc770a	
+File: /usr/bin/anadock_mpi	100755	root:root	e8626af65000ccef375ce778a7519260	
+File: /usr/bin/anadock_mpi_d	100755	root:root	eda08832af633c608a45a5712e41a802	
+File: /usr/bin/do_dssp_mpi	100755	root:root	787429e974441f7540abfa7eb8107746	
+File: /usr/bin/do_dssp_mpi_d	100755	root:root	f21d162e1231511f3421a61a20124f02	
+File: /usr/bin/editconf_mpi	100755	root:root	6912c885790e03ef0adb4ff3ddd4d084	
+File: /usr/bin/editconf_mpi_d	100755	root:root	5b139dd56ccc5d42685f0b18f47b1215	
+File: /usr/bin/eneconv_mpi	100755	root:root	4a5cbd4517d59837d03ceba01ffbdb23	
+File: /usr/bin/eneconv_mpi_d	100755	root:root	0fcd5bb94f5173cb2a964b19a8c7ef4d	
+File: /usr/bin/g_anadock	100755	root:root	b958d95d5f9030a14112184af36786c0	
+File: /usr/bin/g_anadock_d	100755	root:root	fc15a3f1bd4d1aec7dde559b390404a8	
+File: /usr/bin/g_anaeig	100755	root:root	c6df4e9429a9565e4ceb385c21d7e68a	
+File: /usr/bin/g_anaeig_d	100755	root:root	a4b7cb8f1b28f3627d60b36d8fedf962	
+File: /usr/bin/g_anaeig_mpi	100755	root:root	4f344bd7b76249c0384086310d1862b3	
+File: /usr/bin/g_anaeig_mpi_d	100755	root:root	ab10ffe1cf9d69c31f3e57c0805b96ee	
+File: /usr/bin/g_analyze	100755	root:root	38e0a8fdc7aa6d5691d41fe054f5849d	
+File: /usr/bin/g_analyze_d	100755	root:root	6db6d13e91a80b42f16ccd87069a6d51	
+File: /usr/bin/g_analyze_mpi	100755	root:root	8557fbd231509cd90da98370626a2f01	
+File: /usr/bin/g_analyze_mpi_d	100755	root:root	2fc9a00cae9c3dc775631b414d3ee5d2	
+File: /usr/bin/g_angle	100755	root:root	044fe4a112acf8f2ea6ba5eac9dce8e4	
+File: /usr/bin/g_angle_d	100755	root:root	b2a4a97b0444f27e34b5effd0d973167	
+File: /usr/bin/g_angle_mpi	100755	root:root	887bf72299fb9a4b7afca507c2669a82	
+File: /usr/bin/g_angle_mpi_d	100755	root:root	14a9930bdffea8599299b6b1d0e6bf82	
+File: /usr/bin/g_bond	100755	root:root	a565da97c985a1703451db65678266c4	
+File: /usr/bin/g_bond_d	100755	root:root	02e40e0d99312f0013945d3174c0adc3	
+File: /usr/bin/g_bond_mpi	100755	root:root	d8cd5c0adcc4cc232e75849f6cbf06a4	
+File: /usr/bin/g_bond_mpi_d	100755	root:root	2c1ae5fddbc4691d83647d5799fc3435	
+File: /usr/bin/g_bundle	100755	root:root	dd06422412a93d7bedfddcbf9feb4be1	
+File: /usr/bin/g_bundle_d	100755	root:root	90b0171ac1ce54e540cf8f2a70fd82ad	
+File: /usr/bin/g_bundle_mpi	100755	root:root	ec226977907170b93f0290597f51f6d7	
+File: /usr/bin/g_bundle_mpi_d	100755	root:root	01988cbfc43b641daccd795bd9e04275	
+File: /usr/bin/g_chi	100755	root:root	85db67e11e59b3444ca097959c1b3df9	
+File: /usr/bin/g_chi_d	100755	root:root	88659e965ebe00a2577a11027a71d209	
+File: /usr/bin/g_chi_mpi	100755	root:root	42809b4635a85363b9664677a2d34ac4	
+File: /usr/bin/g_chi_mpi_d	100755	root:root	102cd295965d14005172f036888a1548	
+File: /usr/bin/g_cluster	100755	root:root	3f2cf62337745a87efefa7a63e003502	
+File: /usr/bin/g_cluster_d	100755	root:root	6ba30607a572b9fa6af1604ecd43f2ee	
+File: /usr/bin/g_cluster_mpi	100755	root:root	4a389560e8a5b639b7b3e9e60d80e9a5	
+File: /usr/bin/g_cluster_mpi_d	100755	root:root	a575c448ff80637d9af193e9ddfa7ac5	
+File: /usr/bin/g_clustsize	100755	root:root	cd442bcc1d32c76c431ccc8c09d032d7	
+File: /usr/bin/g_clustsize_d	100755	root:root	68e3fbb81ddeb9cfa97030278cbe5bd8	
+File: /usr/bin/g_clustsize_mpi	100755	root:root	481290bb6439de6f730e6d6ab15a0d90	
+File: /usr/bin/g_clustsize_mpi_d	100755	root:root	5c9e9914cfdb32ce5ce5dd97456d99f8	
+File: /usr/bin/g_confrms	100755	root:root	dd27d631f45bdf19783312daefc82ff3	
+File: /usr/bin/g_confrms_d	100755	root:root	66429193f798ec4cde991f1d83f61dd0	
+File: /usr/bin/g_confrms_mpi	100755	root:root	ef450049a5b9e523015a5c9fe0fecc3c	
+File: /usr/bin/g_confrms_mpi_d	100755	root:root	51f0627e4ec838dd7ac2d3e8c296dce9	
+File: /usr/bin/g_covar	100755	root:root	4f71ee01121933b8403212d88e7d697e	
+File: /usr/bin/g_covar_d	100755	root:root	472f5c3098fbee6bfad5b1e2728699a7	
+File: /usr/bin/g_covar_mpi	100755	root:root	c3d90b333a17d86421f6efd7482cd36b	
+File: /usr/bin/g_covar_mpi_d	100755	root:root	d357ec0d00ffa38d1db53cde8a8873b3	
+File: /usr/bin/g_current	100755	root:root	3261e2e5ca7c8be464e57a787e5631d8	
+File: /usr/bin/g_current_d	100755	root:root	be5ad968175bc979ad90109de2abc236	
+File: /usr/bin/g_current_mpi	100755	root:root	a863a2aaed87c2be31d8bbe083491b29	
+File: /usr/bin/g_current_mpi_d	100755	root:root	c9cbad5ec473bedd8885c4bb21fedb45	
 File: /usr/bin/g_demux.pl	100755	root:root	a8f914da8c61382e1ed7a690a02c4d7f	
-File: /usr/bin/g_density	100755	root:root	449c42f6c4a716f221bc7a15c17d3b42	
-File: /usr/bin/g_density_d	100755	root:root	cdacf1f94aac03a03aa7a1c6d9eb2eff	
-File: /usr/bin/g_density_mpi	100755	root:root	c5274d069ba32c68a99d39c4c4e42bec	
-File: /usr/bin/g_density_mpi_d	100755	root:root	a7d9d6de001aa740888e537b9fc9a198	
-File: /usr/bin/g_densmap	100755	root:root	7a5a9cf931489ce3ed1126d53a61ee3e	
-File: /usr/bin/g_densmap_d	100755	root:root	49e9eef699cf257389561f942c236d23	
-File: /usr/bin/g_densmap_mpi	100755	root:root	cd16e4e2405ff416ca216edbb01eaccb	
-File: /usr/bin/g_densmap_mpi_d	100755	root:root	4b1864a7e0e600bd3700f9004d065cca	
-File: /usr/bin/g_dielectric	100755	root:root	72bbe785a4cebd4a2f4f9a7d5c4d6ea6	
-File: /usr/bin/g_dielectric_d	100755	root:root	8b89c92db66e5df113e3aafb209f28fd	
-File: /usr/bin/g_dielectric_mpi	100755	root:root	e0d1ecd4500956ca663a8df0040e8d50	
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+File: /usr/bin/grompp_mpi_d	100755	root:root	929f7d32256c780bce44e3285b0a619a	
+File: /usr/bin/highway_mpi	100755	root:root	8deee29262f0bc141dc4a4e019180c16	
+File: /usr/bin/highway_mpi_d	100755	root:root	6225e54b8b8c5bce6b85b623e7b7a26e	
+File: /usr/bin/luck_mpi	100755	root:root	0bbb749c62b349fcc028f7c1213b458b	
+File: /usr/bin/luck_mpi_d	100755	root:root	ea76a4d245e7604e7e8e8f6dcd99ad76	
+File: /usr/bin/make_edi_mpi	100755	root:root	bfe7482caba1436369724f7973a23616	
+File: /usr/bin/make_edi_mpi_d	100755	root:root	5cc9c72afb8c6cab2a8f8e7739ef261c	
+File: /usr/bin/make_ndx_mpi	100755	root:root	3e7a2fe3ac7d945f901af5d86b194c4f	
+File: /usr/bin/make_ndx_mpi_d	100755	root:root	aae8651f361d92c253e456f6e10b0e37	
+File: /usr/bin/mk_angndx_mpi	100755	root:root	cd0deb1f48dea4e3e2ecd3f52808fe00	
+File: /usr/bin/mk_angndx_mpi_d	100755	root:root	ec7d92952a095ff07c88631f08d15308	
+File: /usr/bin/ngmx_mpi	100755	root:root	9125cd922bb3248251a15aa523c46dc9	
+File: /usr/bin/ngmx_mpi_d	100755	root:root	04fbbe9b3cac8688bc8db0b236d7c0f5	
+File: /usr/bin/pdb2gmx_mpi	100755	root:root	fa11b3998033f06e5385e434c35e0c0d	
+File: /usr/bin/pdb2gmx_mpi_d	100755	root:root	a8fead57eca2a2a4fb93e277ad3eb6d4	
+File: /usr/bin/protonate_mpi	100755	root:root	08bf69ef80c72fd2881c9d586e361164	
+File: /usr/bin/protonate_mpi_d	100755	root:root	975d3700acdb83f47d386105f5b235a8	
+File: /usr/bin/sigeps_mpi	100755	root:root	0100ad64238fe4fe1b0000a51101f587	
+File: /usr/bin/sigeps_mpi_d	100755	root:root	315f6f8fc4b23cc86a5fa555e8a8bf87	
+File: /usr/bin/tpbconv_mpi	100755	root:root	c3b5d8ec5396e2b47d95748a363db659	
+File: /usr/bin/tpbconv_mpi_d	100755	root:root	35aacd22991cd2e5784269dcb459d95a	
+File: /usr/bin/trjcat_mpi	100755	root:root	ed59440d8809b1d4bdf625de5b43aa48	
+File: /usr/bin/trjcat_mpi_d	100755	root:root	81b281209f8923fb1d3d0f38df16dd8b	
+File: /usr/bin/trjconv_mpi	100755	root:root	b2a50b9df8e0812bee12110514d31b32	
+File: /usr/bin/trjconv_mpi_d	100755	root:root	e7f7a64a3cd40366194c60485ff7b51f	
+File: /usr/bin/trjorder_mpi	100755	root:root	481ad36745bf0b61004f902f979ee97b	
+File: /usr/bin/trjorder_mpi_d	100755	root:root	3e89c0230da62ae52b5f0e03a6896d51	
+File: /usr/bin/wheel_mpi	100755	root:root	b30432562a5d09d5d9d84e3cef005938	
+File: /usr/bin/wheel_mpi_d	100755	root:root	ff77360396b8da8dcc68952390b0e4c0	
+File: /usr/bin/x2top_mpi	100755	root:root	90de4c915915e013b9365425ea24f735	
+File: /usr/bin/x2top_mpi_d	100755	root:root	82babfabb503abcd6b149e95aa3ed853	
+File: /usr/bin/xpm2ps_mpi	100755	root:root	2e49ac711bd1767ef2013a2321da58d8	
+File: /usr/bin/xpm2ps_mpi_d	100755	root:root	8eb7311a13ff4d69dce83982944e0dc3	
+File: /usr/bin/xrama_mpi	100755	root:root	8b86d15cbc6877673810c694e3abd912	
+File: /usr/bin/xrama_mpi_d	100755	root:root	64ae49c85e69f6b4485c70f0900d7b73	
+RPMIdentity: 63af15207eeae99bb3b36920ed73579ec61844c792a5644bbc92843bdfc12b608bb3a3ab5a9845d7bdebf01fe581a966475b2e33ad8aaf319d4b385d53527c65
--- gromacs-common-4.0.7-alt8.noarch.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-common-4.0.7-alt8.noarch.rpm.hasher	2022-03-20 07:37:35.290496136 +0000
@@ -162,354 +162,354 @@
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-/usr/src/debug/gromacs-4.0.7/include/types/trx.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/update.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/vcm.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/vec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/viewit.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/vsite.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/wgms.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/writeps.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/xtcio.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/xvgr.h	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/kernel	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/ngmx	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/tools	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/kernel	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/ngmx	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/tools	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/kernel	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/ngmx	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/tools	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/src	40755	root:root	
@@ -1481,24 +1405,6 @@
 /usr/src/debug/gromacs-4.0.7/src/tools	40755	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/addconf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/addconf.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/anadih.c	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/anadock.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/autocorr.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/calcpot.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/calcpot.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/cmat.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/cmat.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/correl.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/correl.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/dlist.c	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/do_dssp.c	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/editconf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigio.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/eigio.h	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/eneconv.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/expfit.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/fitahx.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/fitahx.h	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/g_anaeig.c	100644	root:root	
@@ -1566,76 +1472,2 @@
 /usr/src/debug/gromacs-4.0.7/src/tools/genrestr.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_anaeig.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_analyze.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_angle.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_bond.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_bundle.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_chi.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_cluster.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_clustsize.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_confrms.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_covar.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_current.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_density.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_densmap.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dielectric.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dih.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dipoles.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_disre.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dist.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dyndom.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_editconf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_eneconv.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_enemat.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_energy.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_filter.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genbox.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genconf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genion.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genpr.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_gyrate.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_h2order.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_hbond.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_helix.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_helixorient.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_kinetics.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_lie.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_mdmat.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_mindist.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_morph.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_msd.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_nmeig.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_nmens.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_nmtraj.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_order.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_polystat.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_potential.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_principal.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rama.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rdf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rms.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rmsdist.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rmsf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_rotacf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_saltbr.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sas.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sdf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sgangle.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sham.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sorient.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_spatial.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_spol.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_tcaf.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_traj.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjcat.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjconv.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjorder.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_vanhove.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_velacc.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_wham.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_wheel.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_xpm2ps.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/hxprops.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/hxprops.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/levenmar.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/lsq.c	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/make_edi.c	100644	root:root	
@@ -1643,6 +1475,2 @@
 /usr/src/debug/gromacs-4.0.7/src/tools/mk_angndx.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/nsc.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/nsc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/polynomials.c	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/src/tools/sigeps.c	100644	root:root	
@@ -1656,14 +1484,4 @@
 Requires: debug64(libX11.so.6)  
-Requires: debug64(libc.so.6)  
-Requires: debug64(libgmx.so.5)  
-Requires: debug64(libgmx_d.so.5)  
-Requires: debug64(libgmx_mpi.so.5)  
-Requires: debug64(libgmx_mpi_d.so.5)  
-Requires: debug64(libgsl.so.0)  
-Requires: debug64(libm.so.6)  
-Requires: debug64(libmd.so.5)  
-Requires: debug64(libmd_d.so.5)  
-Requires: debug64(libmd_mpi.so.5)  
-Requires: debug64(libmd_mpi_d.so.5)  
-Requires: debug64(libpthread.so.0)  
+Requires: gromacs-libs-debuginfo = 4.0.7-alt8
+Requires: gromacs-mpi-libs-debuginfo = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
@@ -1671,1268 +1489,1260 @@
 File: /usr/lib/debug/.build-id/00	40755	root:root		
-File: /usr/lib/debug/.build-id/00/6125f43658c30c795d8bcaba93cac0dbec1edd	120777	root:root		../../../../bin/g_cluster_mpi_d
-File: /usr/lib/debug/.build-id/00/6125f43658c30c795d8bcaba93cac0dbec1edd.debug	120777	root:root		../../usr/bin/g_cluster_mpi_d.debug
-File: /usr/lib/debug/.build-id/00/7414576579966fd997fec7e03b96b2ff044920	120777	root:root		../../../../bin/g_nmeig_mpi_d
-File: /usr/lib/debug/.build-id/00/7414576579966fd997fec7e03b96b2ff044920.debug	120777	root:root		../../usr/bin/g_nmeig_mpi_d.debug
-File: /usr/lib/debug/.build-id/00/c1e1d56bca1c4ba492edf61341940021d4fa0c	120777	root:root		../../../../bin/g_cluster
-File: /usr/lib/debug/.build-id/00/c1e1d56bca1c4ba492edf61341940021d4fa0c.debug	120777	root:root		../../usr/bin/g_cluster.debug
-File: /usr/lib/debug/.build-id/00/e64a3669b2cb23966b0e9769534e8638233fa0	120777	root:root		../../../../bin/g_saltbr
-File: /usr/lib/debug/.build-id/00/e64a3669b2cb23966b0e9769534e8638233fa0.debug	120777	root:root		../../usr/bin/g_saltbr.debug
+File: /usr/lib/debug/.build-id/00/28f5c57c7e18ecb1ee4ae91b43651d9464c280	120777	root:root		../../../../bin/g_confrms_d
+File: /usr/lib/debug/.build-id/00/28f5c57c7e18ecb1ee4ae91b43651d9464c280.debug	120777	root:root		../../usr/bin/g_confrms_d.debug
 File: /usr/lib/debug/.build-id/01	40755	root:root		
-File: /usr/lib/debug/.build-id/01/a74192ff4832fc754f810229509aa2941ce416	120777	root:root		../../../../bin/g_potential_mpi_d
-File: /usr/lib/debug/.build-id/01/a74192ff4832fc754f810229509aa2941ce416.debug	120777	root:root		../../usr/bin/g_potential_mpi_d.debug
+File: /usr/lib/debug/.build-id/01/3fbcafef51f47ef8a3a5c988b1628b4ad251b9	120777	root:root		../../../../bin/g_trjconv_d
+File: /usr/lib/debug/.build-id/01/3fbcafef51f47ef8a3a5c988b1628b4ad251b9.debug	120777	root:root		../../usr/bin/g_trjconv_d.debug
+File: /usr/lib/debug/.build-id/01/bb5854b9bcb75d02607f2929c4abad482bc1e1	120777	root:root		../../../../bin/g_nmeig_d
+File: /usr/lib/debug/.build-id/01/bb5854b9bcb75d02607f2929c4abad482bc1e1.debug	120777	root:root		../../usr/bin/g_nmeig_d.debug
 File: /usr/lib/debug/.build-id/02	40755	root:root		
-File: /usr/lib/debug/.build-id/02/6e59ca7f08c69c0098f2a13c72019408da2667	120777	root:root		../../../../bin/g_rmsf_mpi_d
-File: /usr/lib/debug/.build-id/02/6e59ca7f08c69c0098f2a13c72019408da2667.debug	120777	root:root		../../usr/bin/g_rmsf_mpi_d.debug
+File: /usr/lib/debug/.build-id/02/09abf7b3093490e3591c6ce2d9ef53211da302	120777	root:root		../../../../bin/g_helixorient_mpi_d
+File: /usr/lib/debug/.build-id/02/09abf7b3093490e3591c6ce2d9ef53211da302.debug	120777	root:root		../../usr/bin/g_helixorient_mpi_d.debug
+File: /usr/lib/debug/.build-id/02/3acc9ff042f6421ef6d776e15e41e6464a042f	120777	root:root		../../../../bin/g_sham_d
+File: /usr/lib/debug/.build-id/02/3acc9ff042f6421ef6d776e15e41e6464a042f.debug	120777	root:root		../../usr/bin/g_sham_d.debug
+File: /usr/lib/debug/.build-id/02/48306a7bdb7526ef0658d115474ea4a67e1897	120777	root:root		../../../../bin/g_helixorient_d
+File: /usr/lib/debug/.build-id/02/48306a7bdb7526ef0658d115474ea4a67e1897.debug	120777	root:root		../../usr/bin/g_helixorient_d.debug
+File: /usr/lib/debug/.build-id/02/62ba53b419c7a9c76bcdb92d45c28840af5fe6	120777	root:root		../../../../bin/do_dssp_mpi
+File: /usr/lib/debug/.build-id/02/62ba53b419c7a9c76bcdb92d45c28840af5fe6.debug	120777	root:root		../../usr/bin/do_dssp_mpi.debug
+File: /usr/lib/debug/.build-id/02/9aa3a36b9e408ea3893153d4d1e6c8182d695d	120777	root:root		../../../../bin/g_kinetics_mpi_d
+File: /usr/lib/debug/.build-id/02/9aa3a36b9e408ea3893153d4d1e6c8182d695d.debug	120777	root:root		../../usr/bin/g_kinetics_mpi_d.debug
 File: /usr/lib/debug/.build-id/03	40755	root:root		
-File: /usr/lib/debug/.build-id/03/77771814bac5604292be704fbc18c3e081bab5	120777	root:root		../../../../bin/g_x2top
-File: /usr/lib/debug/.build-id/03/77771814bac5604292be704fbc18c3e081bab5.debug	120777	root:root		../../usr/bin/g_x2top.debug
-File: /usr/lib/debug/.build-id/03/bcb90eb16eb24765915133cc53c4e1752482fb	120777	root:root		../../../../bin/tpbconv_mpi
-File: /usr/lib/debug/.build-id/03/bcb90eb16eb24765915133cc53c4e1752482fb.debug	120777	root:root		../../usr/bin/tpbconv_mpi.debug
+File: /usr/lib/debug/.build-id/03/b3f81cb4037a7339dd73847c13052e75f30e03	120777	root:root		../../../../bin/g_h2order
+File: /usr/lib/debug/.build-id/03/b3f81cb4037a7339dd73847c13052e75f30e03.debug	120777	root:root		../../usr/bin/g_h2order.debug
+File: /usr/lib/debug/.build-id/03/da8e5f7f0fdbdee4d01046410a8ac976095764	120777	root:root		../../../../bin/g_dyndom_d
+File: /usr/lib/debug/.build-id/03/da8e5f7f0fdbdee4d01046410a8ac976095764.debug	120777	root:root		../../usr/bin/g_dyndom_d.debug
 File: /usr/lib/debug/.build-id/04	40755	root:root		
-File: /usr/lib/debug/.build-id/04/5cf9dd65106a1e1c13daf55b983d65b4dfc573	120777	root:root		../../../../bin/g_chi_mpi
-File: /usr/lib/debug/.build-id/04/5cf9dd65106a1e1c13daf55b983d65b4dfc573.debug	120777	root:root		../../usr/bin/g_chi_mpi.debug
+File: /usr/lib/debug/.build-id/04/364f090c455ce4a7d7afdda2040500fbf036e5	120777	root:root		../../../../bin/g_anaeig
+File: /usr/lib/debug/.build-id/04/364f090c455ce4a7d7afdda2040500fbf036e5.debug	120777	root:root		../../usr/bin/g_anaeig.debug
+File: /usr/lib/debug/.build-id/04/8285b8909ffcedfbeefbd4f76c0b490792d628	120777	root:root		../../../../bin/g_current_mpi
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-File: /usr/src/debug/gromacs-4.0.7/include/gbutil.h	100644	root:root	3aa1b78f99b1920dc3e9bdba7312eb5b	
 File: /usr/src/debug/gromacs-4.0.7/include/gmx_ana.h	100644	root:root	41d0273c9e15cd28367e5358531726f6	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_arpack.h	100644	root:root	454f735018543d6d69d8c040f03478fd	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_fatal.h	100644	root:root	805f54c1ca8a8d8ac4febde543e651a9	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_lapack.h	100644	root:root	9be1260a1425b14bb2d28be35da96255	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_random.h	100644	root:root	e40aa065ccfedf30e1a6067f59b377c6	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_wallcycle.h	100644	root:root	e883b966e9d1dd3495376bd8594f3851	
-File: /usr/src/debug/gromacs-4.0.7/include/gmxcomplex.h	100644	root:root	2132879af4f29bdf3fabab68bd4ba393	
-File: /usr/src/debug/gromacs-4.0.7/include/gmxfio.h	100644	root:root	4c7f159d01a8c905ee03a9dc62ea2b27	
 File: /usr/src/debug/gromacs-4.0.7/include/gpp_atomtype.h	100644	root:root	0c50c1e1ccc4d32c57e974fa5aceaf43	
@@ -2940,85 +2750,17 @@
 File: /usr/src/debug/gromacs-4.0.7/include/grompp.h	100644	root:root	386dc96c9fbc044aa74c5e1875357adc	
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-File: /usr/src/debug/gromacs-4.0.7/include/xtcio.h	100644	root:root	1c69add0222cc0a7f41f27ba4a8854c0	
-File: /usr/src/debug/gromacs-4.0.7/include/xvgr.h	100644	root:root	3ebb5274eb05c80f0bc1a0e3d7df7729	
+File: /usr/src/debug/gromacs-4.0.7/mpi-double	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/kernel	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/ngmx	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/tools	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/kernel	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/ngmx	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/tools	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/kernel	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/ngmx	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/tools	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/src	40755	root:root		
@@ -3151,24 +2893,6 @@
 File: /usr/src/debug/gromacs-4.0.7/src/tools	40755	root:root		
-File: /usr/src/debug/gromacs-4.0.7/src/tools/addconf.c	100644	root:root	35470d49237bb6f8d641ea916def3da7	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/addconf.h	100644	root:root	8148670ea4b87ddc3eefcfbd36726585	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/anadih.c	100644	root:root	d95c2fc0aca35c227b8bd862c7aa33e0	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/anadock.c	100644	root:root	3c48ff37e0e72c393a1f758b3d0a49b3	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/autocorr.c	100644	root:root	0c1a86ad6332ec9cdb95b0979d1b6917	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/calcpot.c	100644	root:root	6b8e19f675ae379352b442cdb99058be	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/calcpot.h	100644	root:root	4f319e4095ad1b8d0402b95bfbcf097e	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/cmat.c	100644	root:root	c59cda609182aa9499ca46145212cf24	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/cmat.h	100644	root:root	b6f4f48e86567b8a9c534f704a19d9ca	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/correl.c	100644	root:root	5beceb08efb63b25812ae3fa9dea4df8	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/correl.h	100644	root:root	d106dca3f415aadca81df68c844fda59	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/dlist.c	100644	root:root	a94a01049b7be59329236912d5addf24	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/do_dssp.c	100644	root:root	e370cc7832e0c3047485a7778edd3422	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/editconf.c	100644	root:root	c9f8de7186293b0ebe5aaf86409a5a89	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.c	100644	root:root	d1d0bdcf3040fd66e837008f9eb37a6b	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.h	100644	root:root	c97ab1867675c8e8caf90ca4a8808bf5	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/eigio.c	100644	root:root	6200a4e730e08476cb75164d5800b561	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/eigio.h	100644	root:root	75f7fb508473d27ad138e80fdc9d4187	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/eneconv.c	100644	root:root	667e5441c3fdaac1c5439ef60d848016	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/expfit.c	100644	root:root	bcffd767f6d496aae26adc0fc8bf2bcd	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/fitahx.c	100644	root:root	effb0767875126cee7ed0e1b6f6ecc3f	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/fitahx.h	100644	root:root	0d2db56d74d49282de5af19d09823635	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/g_anaeig.c	100644	root:root	8d54be2512bff89753cb78b68cb4ed3d	
@@ -3236,76 +2960,2 @@
 File: /usr/src/debug/gromacs-4.0.7/src/tools/genrestr.c	100644	root:root	85377cd554f22773e2b04d68a82c7e5f	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_anaeig.c	100644	root:root	f6e98c01cbf8e1d8ad73896c1df695a3	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_analyze.c	100644	root:root	ecb6e8095e0b097aaf703dc63661fb33	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_angle.c	100644	root:root	a935a17c5c630301ce668fe955c98d19	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_bond.c	100644	root:root	78705c39653ffbf7eb3c0eff4b562457	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_bundle.c	100644	root:root	bd5aabf2539d0559cca3104b5708393c	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_chi.c	100644	root:root	59e9e1abf600f55f8bcb72b442666924	
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-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_clustsize.c	100644	root:root	da7bee5dc0d7155189a579d265ce0a82	
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-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_dyndom.c	100644	root:root	948c22bc2296d64b6d9517d5023b6d33	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_editconf.c	100644	root:root	a4a6daa8015afac184462096be0807a8	
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-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_energy.c	100644	root:root	5590c320589107cb7e4cc1d450760342	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_filter.c	100644	root:root	18077232c37210013849af012e19c432	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_genbox.c	100644	root:root	fd8a2fa080e13812b0bd4aa92455c14b	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_genconf.c	100644	root:root	5003cb5df097a9c5d19e59e82f985a2a	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_genion.c	100644	root:root	4c09b92c4de0b774b263a515bce533fd	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_genpr.c	100644	root:root	b60a09eec280bae71db9ede72922455d	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_gyrate.c	100644	root:root	9ee4921616c79bb82d3e51007a513361	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_h2order.c	100644	root:root	c43c54245e769f460a442651c1f60fd4	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_hbond.c	100644	root:root	865d256973c3b81f8c39de6ba52feb07	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_helix.c	100644	root:root	24041989822c63c8f3678a599929c00c	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_helixorient.c	100644	root:root	65efe845e1ac76026f08b5f904561ff3	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_kinetics.c	100644	root:root	a9d5db85641649f6c61b0d780dc46183	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_lie.c	100644	root:root	00a26fb5e993b17735425e3f9c685744	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_mdmat.c	100644	root:root	8fb125c06d248dc3217c327fb9da7da9	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_mindist.c	100644	root:root	a341d4851aca5dc1b3a44b66422acc59	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_morph.c	100644	root:root	21c3f73566d3e520cba714baf1114a67	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_msd.c	100644	root:root	a6da869f879a861a23f09a8a6ba04bd7	
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-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_potential.c	100644	root:root	219e39bfb6ebd9d55d1b451335f5db5b	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_principal.c	100644	root:root	5abc5b5b4211cd56c7e58e2d26868520	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_rama.c	100644	root:root	91fdf74986a8cc1591b77c3452badbd0	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_rdf.c	100644	root:root	41dd120e7bb72365fed2a671b537c8b5	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_rms.c	100644	root:root	0d2efc542aac1307416a52d8b5245b99	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_rmsdist.c	100644	root:root	229b30d64b128917a7fc723a80cd7d3d	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_rmsf.c	100644	root:root	6058a78b993f151698aaa92d44ba3fcb	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_rotacf.c	100644	root:root	7e6e5c6e20be62909672ce532c1cd4ca	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_saltbr.c	100644	root:root	87bb7ec7dc1f020d438cfcb1c919063d	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_sas.c	100644	root:root	9affd41af1d5e0da1b4b6ce24bcfa06f	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_sdf.c	100644	root:root	a08b8116f4e32ab3b7fe9f42c076a37f	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_sgangle.c	100644	root:root	a7a7dd267a2d3a3b1d443fb297b442f2	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_sham.c	100644	root:root	301537b49098f1fc1ae99b1ef52a3752	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_sorient.c	100644	root:root	dfb1cd86d4e40e90db9e35aee711688d	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_spatial.c	100644	root:root	83866887226123c33e231b004d867ef4	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_spol.c	100644	root:root	b4b89d0d99e3230ae3fb4bbb33fe7a87	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_tcaf.c	100644	root:root	42e25051f133f5e72a2f992b650fc276	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_traj.c	100644	root:root	5fe7ba330efb72447f406dc6ffac4bfa	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjcat.c	100644	root:root	e4f027d904ecbe5a67e13ad04bfd3466	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjconv.c	100644	root:root	589fb61403738b21ac818c54a089fca3	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjorder.c	100644	root:root	f32968bb2792dc99fd32df18c2d9a9b7	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_vanhove.c	100644	root:root	6063e757ea1873123dc3bb208f09ee37	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_velacc.c	100644	root:root	0b48fb5e41bef44642db2cb96a9bee50	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_wham.c	100644	root:root	432d3e790c4be1309866ea2dd406f621	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_wheel.c	100644	root:root	f1e82bb30db82c4c82c21e757b4db7ee	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/gmx_xpm2ps.c	100644	root:root	061732075520b7821a856ffce1de560c	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/hxprops.c	100644	root:root	7301211368d6d1db8f3c07db5af5a9fc	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/hxprops.h	100644	root:root	70e18dcbb237830db780c6183e1475fb	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/levenmar.c	100644	root:root	ce4317f91fb5e5ce0eedb90bc71b9210	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/lsq.c	100644	root:root	e062562fa8b650cc7ecdbcdef9b19b3f	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/make_edi.c	100644	root:root	edb5e6d4e7cef77de124f2994014d19b	
@@ -3313,6 +2963,2 @@
 File: /usr/src/debug/gromacs-4.0.7/src/tools/mk_angndx.c	100644	root:root	46192a0533dfd2c62ff10e8ffa9e9dbc	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/nsc.c	100644	root:root	12b95d2e0162003494836e030e815620	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/nsc.h	100644	root:root	ca4ea2663617c58a38e42d84a1500f41	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/polynomials.c	100644	root:root	5a958f4c1ae90bfdd7916b4702db9328	
-File: /usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c	100644	root:root	8affa9c2397fc3c2e35f4d53bf34a51c	
 File: /usr/src/debug/gromacs-4.0.7/src/tools/sigeps.c	100644	root:root	342d4b3faa955a42dfe42c52ed8a2452	
@@ -3323,2 +2969,2 @@
 File: /usr/src/debug/gromacs-4.0.7/src/tools/xpm2ps.c	100644	root:root	75ae0e413f5ac06cf53c007fb8607a47	
-RPMIdentity: 0e1f92a0f5c226210a85596057e3f7d52ce547d497c316829fc51718c5acc3f88211ef91cecab71e11c48b2d3f666e551e441c0a817a02f02625610832cb5218
+RPMIdentity: 0941422280c0bfc1b10d89a5cf04b9974f8ff73b74280fdad98e75e3996879d5e1fb64f7d47e798910cdb225d38f3839bab948fca1faad650035e8ab55152588
--- gromacs-devel-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-devel-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.459496429 +0000
@@ -329,2 +329,2 @@
 File: /usr/share/gromacs/template/template.c	100644	root:root	1ca47a149efce143639b7e98c1af3bbd	
-RPMIdentity: f55c70e031526467ab2b5beb65c1accabb95533a551cfe7a6a32e8e75f592d40e2af52683149d9a9f9e80d4c93577f576e2480d181d6eab8ed6fef2d5fc6a8a0
+RPMIdentity: a6455adfa24ae7c19493c367f6a6e71661b90632c76970a47ddfac73cef507785758ff89cd7f80ce5f8537c40a5a45ed626088584239ea38108faac3b6a1ebe4
--- gromacs-doc-4.0.7-alt8.noarch.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-doc-4.0.7-alt8.noarch.rpm.hasher	2022-03-20 07:37:35.532496555 +0000
@@ -318,2 +318,2 @@
 File: /usr/share/gromacs/html/online/yourown.html	100644	root:root	3d0b0c8e76a177756a7770a7ac6158f3	
-RPMIdentity: 1b6739958a527e0dbb8656f3f2ecd18ad8afb388d7f7e115b4ca1ebe7aa4d528d0a58044d7ff9a475db61541ab77ee4906efaf9ef907f6298680e6a6746784cd
+RPMIdentity: c8b8985a8e84c0ddd510c54ad270f42d547ace34375c67b42e186bb575788c67ea45ab151860ef2f148f3618cd57d7bdb7e0fe1e33b5348b63ac5e88d89883f2
--- gromacs-libs-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-libs-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.602496677 +0000
@@ -14,2 +14,3 @@
 Requires: libc.so.6(GLIBC_2.11)(64bit)  
+Requires: libc.so.6(GLIBC_2.14)(64bit)  
 Requires: libc.so.6(GLIBC_2.2.5)(64bit)  
@@ -19,8 +20,9 @@
 Requires: libc.so.6(GLIBC_2.7)(64bit)  
-Requires: libfftw3.so.3()(64bit) >= set:njvWohu96CktcRqXhkPvHBAu6qHBD02ZmK8KoqUbFM1OiA0
+Requires: libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1
 Requires: rpmlib(SetVersions)  
-Requires: libfftw3f.so.3()(64bit) >= set:njd9yz66TfRRr1P91P6VQRZaA59LbaV5uJsDO2VZmyMt3k0
-Requires: libgsl.so.0()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
+Requires: libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3
+Requires: libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
 Requires: liblapack.so.4()(64bit) >= set:omax1kCj8
 Requires: libm.so.6(GLIBC_2.2.5)(64bit)  
+Requires: libm.so.6(GLIBC_2.27)(64bit)  
 Requires: libopenblas.so.0()(64bit)  
@@ -36,13 +38,13 @@
 File: /usr/lib64/libgmx.so.5	120777	root:root		libgmx.so.5.0.0
-File: /usr/lib64/libgmx.so.5.0.0	100644	root:root	c80671a0333b9ba6d879d7d58a82f366	
+File: /usr/lib64/libgmx.so.5.0.0	100644	root:root	5d3ce2c3b80824eff4733807114c7bef	
 File: /usr/lib64/libgmx_d.so.5	120777	root:root		libgmx_d.so.5.0.0
-File: /usr/lib64/libgmx_d.so.5.0.0	100644	root:root	2b616c62fdc0358fc81c3f50577b8e7d	
+File: /usr/lib64/libgmx_d.so.5.0.0	100644	root:root	946a0ade9dc4ee813917e552109252e8	
 File: /usr/lib64/libgmxana.so.5	120777	root:root		libgmxana.so.5.0.0
-File: /usr/lib64/libgmxana.so.5.0.0	100644	root:root	6f01b1a952550f37621cd8f444a6d950	
+File: /usr/lib64/libgmxana.so.5.0.0	100644	root:root	b4ce06b3aa430c2d900bb43e2877dbd0	
 File: /usr/lib64/libgmxana_d.so.5	120777	root:root		libgmxana_d.so.5.0.0
-File: /usr/lib64/libgmxana_d.so.5.0.0	100644	root:root	a2f8579e96187b5122d7e1226590988f	
+File: /usr/lib64/libgmxana_d.so.5.0.0	100644	root:root	dff63624655fca775fbff48380d61b5f	
 File: /usr/lib64/libmd.so.5	120777	root:root		libmd.so.5.0.0
-File: /usr/lib64/libmd.so.5.0.0	100644	root:root	91a2f8ff8821dd919a99b0892dc890b0	
+File: /usr/lib64/libmd.so.5.0.0	100644	root:root	224ad5cbbb24160edd7496ba33c0f165	
 File: /usr/lib64/libmd_d.so.5	120777	root:root		libmd_d.so.5.0.0
-File: /usr/lib64/libmd_d.so.5.0.0	100644	root:root	492602a7c6f5d33cf233432feafbbf62	
-RPMIdentity: ff5b3c804e593d057c5074950f1699779bf11086b4f870f24e9d5f7bdc915f48130962e2b60d3ba9161b4bcc8b5c5187fb2a1e92f9d9e10adeb56b104d5f7f2a
+File: /usr/lib64/libmd_d.so.5.0.0	100644	root:root	8def419648a954c681c4fcf7e0dd5411	
+RPMIdentity: e1ebf25c4926df8d17b3c4700a2923f49ac1fcbbd3f44d49af764d3b73517de938f659716fed2293c1aca8a07d3656e0c64b6a66eed8582a919162cb1f224c92
--- gromacs-libs-debuginfo-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-libs-debuginfo-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.688496826 +0000
@@ -1,19 +1,19 @@
-/usr/lib/debug/.build-id/06	40755	root:root	
-/usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05	120777	root:root	../../../../lib64/libgmx.so.5.0.0
-/usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05.debug	120777	root:root	../../usr/lib64/libgmx.so.5.0.0.debug
-/usr/lib/debug/.build-id/16	40755	root:root	
-/usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1	120777	root:root	../../../../lib64/libgmx_d.so.5.0.0
-/usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1.debug	120777	root:root	../../usr/lib64/libgmx_d.so.5.0.0.debug
-/usr/lib/debug/.build-id/64	40755	root:root	
-/usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062	120777	root:root	../../../../lib64/libmd_d.so.5.0.0
-/usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062.debug	120777	root:root	../../usr/lib64/libmd_d.so.5.0.0.debug
-/usr/lib/debug/.build-id/ce	40755	root:root	
-/usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac	120777	root:root	../../../../lib64/libgmxana_d.so.5.0.0
-/usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac.debug	120777	root:root	../../usr/lib64/libgmxana_d.so.5.0.0.debug
-/usr/lib/debug/.build-id/f3	40755	root:root	
-/usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d	120777	root:root	../../../../lib64/libgmxana.so.5.0.0
-/usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d.debug	120777	root:root	../../usr/lib64/libgmxana.so.5.0.0.debug
-/usr/lib/debug/.build-id/fd	40755	root:root	
-/usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475	120777	root:root	../../../../lib64/libmd.so.5.0.0
-/usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475.debug	120777	root:root	../../usr/lib64/libmd.so.5.0.0.debug
+/usr/lib/debug/.build-id/1e	40755	root:root	
+/usr/lib/debug/.build-id/1e/ffb07b11bbbc2fff7fd99b6490d12e3ca50ae7	120777	root:root	../../../../lib64/libgmxana.so.5.0.0
+/usr/lib/debug/.build-id/1e/ffb07b11bbbc2fff7fd99b6490d12e3ca50ae7.debug	120777	root:root	../../usr/lib64/libgmxana.so.5.0.0.debug
+/usr/lib/debug/.build-id/70	40755	root:root	
+/usr/lib/debug/.build-id/70/6353fe22bd84a6b21fe7f32a4c951d5fd4e228	120777	root:root	../../../../lib64/libgmxana_d.so.5.0.0
+/usr/lib/debug/.build-id/70/6353fe22bd84a6b21fe7f32a4c951d5fd4e228.debug	120777	root:root	../../usr/lib64/libgmxana_d.so.5.0.0.debug
+/usr/lib/debug/.build-id/95	40755	root:root	
+/usr/lib/debug/.build-id/95/acfaef68fcee826f180104a631ed99077377bc	120777	root:root	../../../../lib64/libgmx.so.5.0.0
+/usr/lib/debug/.build-id/95/acfaef68fcee826f180104a631ed99077377bc.debug	120777	root:root	../../usr/lib64/libgmx.so.5.0.0.debug
+/usr/lib/debug/.build-id/b8	40755	root:root	
+/usr/lib/debug/.build-id/b8/ce1c6140f3f936d8f7c2cafd63d20ce7d105fc	120777	root:root	../../../../lib64/libmd_d.so.5.0.0
+/usr/lib/debug/.build-id/b8/ce1c6140f3f936d8f7c2cafd63d20ce7d105fc.debug	120777	root:root	../../usr/lib64/libmd_d.so.5.0.0.debug
+/usr/lib/debug/.build-id/c4	40755	root:root	
+/usr/lib/debug/.build-id/c4/5519b8f7e1bf7a33d609f6840c077db75a5981	120777	root:root	../../../../lib64/libmd.so.5.0.0
+/usr/lib/debug/.build-id/c4/5519b8f7e1bf7a33d609f6840c077db75a5981.debug	120777	root:root	../../usr/lib64/libmd.so.5.0.0.debug
+/usr/lib/debug/.build-id/d0	40755	root:root	
+/usr/lib/debug/.build-id/d0/e04cc7a5ebd108bd8b119aed40e513fc7756f0	120777	root:root	../../../../lib64/libgmx_d.so.5.0.0
+/usr/lib/debug/.build-id/d0/e04cc7a5ebd108bd8b119aed40e513fc7756f0.debug	120777	root:root	../../usr/lib64/libgmx_d.so.5.0.0.debug
 /usr/lib/debug/usr/lib64/libgmx.so.5.0.0.debug	100644	root:root	
@@ -34,2 +34,4 @@
 /usr/src/debug/gromacs-4.0.7/double/src/gmxlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_blas	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_lapack	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded	40755	root:root	
@@ -103,2 +105,5 @@
 /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/double/src/mdlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/double/src/tools	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/include	40755	root:root	
@@ -138,2 +143,3 @@
 /usr/src/debug/gromacs-4.0.7/include/invblock.h	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/include/macros.h	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/include/main.h	100644	root:root	
@@ -229,2 +235,4 @@
 /usr/src/debug/gromacs-4.0.7/single/src/gmxlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_blas	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_lapack	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded	40755	root:root	
@@ -298,2 +306,5 @@
 /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/mdlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/single/src/tools	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/src	40755	root:root	
@@ -869,3 +880,3 @@
 Requires: debug64(libfftw3f.so.3)  
-Requires: debug64(libgsl.so.0)  
+Requires: debug64(libgsl.so.23)  
 Requires: debug64(liblapack.so.4)  
@@ -881,31 +892,31 @@
 Provides: gromacs-libs-debuginfo = 4.0.7-alt8
-File: /usr/lib/debug/.build-id/06	40755	root:root		
-File: /usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05	120777	root:root		../../../../lib64/libgmx.so.5.0.0
-File: /usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05.debug	120777	root:root		../../usr/lib64/libgmx.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/16	40755	root:root		
-File: /usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1	120777	root:root		../../../../lib64/libgmx_d.so.5.0.0
-File: /usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1.debug	120777	root:root		../../usr/lib64/libgmx_d.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/64	40755	root:root		
-File: /usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062	120777	root:root		../../../../lib64/libmd_d.so.5.0.0
-File: /usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062.debug	120777	root:root		../../usr/lib64/libmd_d.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/ce	40755	root:root		
-File: /usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac	120777	root:root		../../../../lib64/libgmxana_d.so.5.0.0
-File: /usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac.debug	120777	root:root		../../usr/lib64/libgmxana_d.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/f3	40755	root:root		
-File: /usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d	120777	root:root		../../../../lib64/libgmxana.so.5.0.0
-File: /usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d.debug	120777	root:root		../../usr/lib64/libgmxana.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/fd	40755	root:root		
-File: /usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475	120777	root:root		../../../../lib64/libmd.so.5.0.0
-File: /usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475.debug	120777	root:root		../../usr/lib64/libmd.so.5.0.0.debug
-File: /usr/lib/debug/usr/lib64/libgmx.so.5.0.0.debug	100644	root:root	499f6b6c28d6cf5f9aa31de0c1a68ad9	
+File: /usr/lib/debug/.build-id/1e	40755	root:root		
+File: /usr/lib/debug/.build-id/1e/ffb07b11bbbc2fff7fd99b6490d12e3ca50ae7	120777	root:root		../../../../lib64/libgmxana.so.5.0.0
+File: /usr/lib/debug/.build-id/1e/ffb07b11bbbc2fff7fd99b6490d12e3ca50ae7.debug	120777	root:root		../../usr/lib64/libgmxana.so.5.0.0.debug
+File: /usr/lib/debug/.build-id/70	40755	root:root		
+File: /usr/lib/debug/.build-id/70/6353fe22bd84a6b21fe7f32a4c951d5fd4e228	120777	root:root		../../../../lib64/libgmxana_d.so.5.0.0
+File: /usr/lib/debug/.build-id/70/6353fe22bd84a6b21fe7f32a4c951d5fd4e228.debug	120777	root:root		../../usr/lib64/libgmxana_d.so.5.0.0.debug
+File: /usr/lib/debug/.build-id/95	40755	root:root		
+File: /usr/lib/debug/.build-id/95/acfaef68fcee826f180104a631ed99077377bc	120777	root:root		../../../../lib64/libgmx.so.5.0.0
+File: /usr/lib/debug/.build-id/95/acfaef68fcee826f180104a631ed99077377bc.debug	120777	root:root		../../usr/lib64/libgmx.so.5.0.0.debug
+File: /usr/lib/debug/.build-id/b8	40755	root:root		
+File: /usr/lib/debug/.build-id/b8/ce1c6140f3f936d8f7c2cafd63d20ce7d105fc	120777	root:root		../../../../lib64/libmd_d.so.5.0.0
+File: /usr/lib/debug/.build-id/b8/ce1c6140f3f936d8f7c2cafd63d20ce7d105fc.debug	120777	root:root		../../usr/lib64/libmd_d.so.5.0.0.debug
+File: /usr/lib/debug/.build-id/c4	40755	root:root		
+File: /usr/lib/debug/.build-id/c4/5519b8f7e1bf7a33d609f6840c077db75a5981	120777	root:root		../../../../lib64/libmd.so.5.0.0
+File: /usr/lib/debug/.build-id/c4/5519b8f7e1bf7a33d609f6840c077db75a5981.debug	120777	root:root		../../usr/lib64/libmd.so.5.0.0.debug
+File: /usr/lib/debug/.build-id/d0	40755	root:root		
+File: /usr/lib/debug/.build-id/d0/e04cc7a5ebd108bd8b119aed40e513fc7756f0	120777	root:root		../../../../lib64/libgmx_d.so.5.0.0
+File: /usr/lib/debug/.build-id/d0/e04cc7a5ebd108bd8b119aed40e513fc7756f0.debug	120777	root:root		../../usr/lib64/libgmx_d.so.5.0.0.debug
+File: /usr/lib/debug/usr/lib64/libgmx.so.5.0.0.debug	100644	root:root	89c4b5a9c791a36a6ce6c29708bc78fe	
 File: /usr/lib/debug/usr/lib64/libgmx.so.5.debug	120777	root:root		libgmx.so.5.0.0.debug
-File: /usr/lib/debug/usr/lib64/libgmx_d.so.5.0.0.debug	100644	root:root	cd9257fc5ef61d9690b156cd5b0909e3	
+File: /usr/lib/debug/usr/lib64/libgmx_d.so.5.0.0.debug	100644	root:root	82a754432d08e9f943f5312046a2678e	
 File: /usr/lib/debug/usr/lib64/libgmx_d.so.5.debug	120777	root:root		libgmx_d.so.5.0.0.debug
-File: /usr/lib/debug/usr/lib64/libgmxana.so.5.0.0.debug	100644	root:root	a78437f33daa2affb09d68602169fa86	
+File: /usr/lib/debug/usr/lib64/libgmxana.so.5.0.0.debug	100644	root:root	8fcb999a0a1d6d372400d53506adb561	
 File: /usr/lib/debug/usr/lib64/libgmxana.so.5.debug	120777	root:root		libgmxana.so.5.0.0.debug
-File: /usr/lib/debug/usr/lib64/libgmxana_d.so.5.0.0.debug	100644	root:root	fbea1042d475e163a3b25de36140123e	
+File: /usr/lib/debug/usr/lib64/libgmxana_d.so.5.0.0.debug	100644	root:root	627a10876ba267d1dc3ca1c14fdb48ab	
 File: /usr/lib/debug/usr/lib64/libgmxana_d.so.5.debug	120777	root:root		libgmxana_d.so.5.0.0.debug
-File: /usr/lib/debug/usr/lib64/libmd.so.5.0.0.debug	100644	root:root	934ba955a48f4d0cb66339ad520cd9bf	
+File: /usr/lib/debug/usr/lib64/libmd.so.5.0.0.debug	100644	root:root	748bd58cc15713acd81182b0f2cdcb04	
 File: /usr/lib/debug/usr/lib64/libmd.so.5.debug	120777	root:root		libmd.so.5.0.0.debug
-File: /usr/lib/debug/usr/lib64/libmd_d.so.5.0.0.debug	100644	root:root	8fa8269d0926f106e23cbcbbfc395d75	
+File: /usr/lib/debug/usr/lib64/libmd_d.so.5.0.0.debug	100644	root:root	00e1fb3f46237645b753ddab57afaada	
 File: /usr/lib/debug/usr/lib64/libmd_d.so.5.debug	120777	root:root		libmd_d.so.5.0.0.debug
@@ -915,2 +926,4 @@
 File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_blas	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_lapack	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded	40755	root:root		
@@ -984,2 +997,5 @@
 File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	1fb49eb716da46519321f206f775d744	
+File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/double/src/mdlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/double/src/tools	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/include	40755	root:root		
@@ -1019,2 +1035,3 @@
 File: /usr/src/debug/gromacs-4.0.7/include/invblock.h	100644	root:root	c4bf8a0c74fbe2cc9cc3bebc1dae2445	
+File: /usr/src/debug/gromacs-4.0.7/include/macros.h	100644	root:root	a86c70a48f171d1158fcdb91b87a36db	
 File: /usr/src/debug/gromacs-4.0.7/include/main.h	100644	root:root	96e890bfece003e88c6e98186213866d	
@@ -1110,2 +1127,4 @@
 File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_blas	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_lapack	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded	40755	root:root		
@@ -1179,2 +1198,5 @@
 File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	6c4c5b1b30d68b9a5b73c10024944bc3	
+File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/mdlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/single/src/tools	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/src	40755	root:root		
@@ -1746,2 +1768,2 @@
 File: /usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c	100644	root:root	8affa9c2397fc3c2e35f4d53bf34a51c	
-RPMIdentity: 03d1fe03c4970e1d0517d6577103d3610ea5075d848bce61fd262d1d8b7ec07f7f8d5284ee36301affbce34100c61c641ccd159723f90b9bfde9bd28e9363208
+RPMIdentity: e42d249c1431b2a5add290119951f21b263ad167cdd9266dca489089059b701db0e1a23e18047c0c8f245a356032fecb31077c1743b4bb6d2a30054e9373f7cf
--- gromacs-mpi-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-mpi-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.764496957 +0000
@@ -2,20 +2,8 @@
 /usr/bin/g_mdrun_mpi_d	100755	root:root	
-Requires: gromacs-common = 4.0.7-alt8
 Requires: /lib64/ld-linux-x86-64.so.2  
-Requires: /usr/lib64/openmpi/lib/libmpi.so.1  
-Requires: libc.so.6(GLIBC_2.2.5)(64bit)  
-Requires: libc.so.6(GLIBC_2.3.4)(64bit)  
-Requires: libc.so.6(GLIBC_2.4)(64bit)  
-Requires: libc.so.6(GLIBC_2.7)(64bit)  
-Requires: libgmx_mpi.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBHR8OngUbBLqumY4FxnK7pA8OsqZI5wyRNu986lgUnKnadfOpHWgnNHFWb7LqrPdmivKHv8j7JzKsZ2cG5aHmTGxZclJVfpcMvSxVFEtoJKNC0QjdahuN07q5ZtUWzVNZcaY0oY0UWqGrPa41
-Requires: rpmlib(SetVersions)  
-Requires: libgmx_mpi_d.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBbiCavFYlPPyD8dYOZ8ci4peJvK0kIeSb1NE22ZyTbBC7VIltEHURkZ5euRSCrIAZstZ3AFzShnKuxhJgpRWmdIDHqPvOowZIecf5J3HRdS4wuGh9Ob6UgHet6OMDZoVNZcaY0oY0UWqGrPa41
-Requires: libm.so.6(GLIBC_2.2.5)(64bit)  
-Requires: libmd_mpi.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: libmd_mpi_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN
-Requires: rtld(GNU_HASH)  
+Requires: gromacs-mpi-libs = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
 Provides: gromacs-mpi = 4.0.7-alt8
-File: /usr/bin/g_mdrun_mpi	100755	root:root	16c9449fc22afcaffe79dae1a5fddbf3	
-File: /usr/bin/g_mdrun_mpi_d	100755	root:root	65448b69f0286e5eb364b548946196a6	
-RPMIdentity: 5b6432522a2b26d504851de2662482d2a4ebd97dc5a2d141a92b16808da9c1c261a05f597242ce16ef63dc11584eead3e0b904271e7b7c6b2a6ae6655fec41df
+File: /usr/bin/g_mdrun_mpi	100755	root:root	f2e2a723a687ad9fc3f8fda0477f9308	
+File: /usr/bin/g_mdrun_mpi_d	100755	root:root	9390974ee14d65f1f432270a73104fc7	
+RPMIdentity: 88494f5be7b9b8c1d680fddd92b1344cee282196df19c40b7b661760811d06f64784e4e3d7dc551a1aed8aaa7fdab9bd0351cb0145963369bfb208f7e45197cc
--- gromacs-mpi-debuginfo-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-mpi-debuginfo-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.843497094 +0000
@@ -1,7 +1,7 @@
-/usr/lib/debug/.build-id/ba	40755	root:root	
-/usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f	120777	root:root	../../../../bin/g_mdrun_mpi_d
-/usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f.debug	120777	root:root	../../usr/bin/g_mdrun_mpi_d.debug
-/usr/lib/debug/.build-id/d0	40755	root:root	
-/usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8	120777	root:root	../../../../bin/g_mdrun_mpi
-/usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8.debug	120777	root:root	../../usr/bin/g_mdrun_mpi.debug
+/usr/lib/debug/.build-id/3e	40755	root:root	
+/usr/lib/debug/.build-id/3e/d4eb801d09b5640afb5a12ab1ff8f68685298f	120777	root:root	../../../../bin/g_mdrun_mpi_d
+/usr/lib/debug/.build-id/3e/d4eb801d09b5640afb5a12ab1ff8f68685298f.debug	120777	root:root	../../usr/bin/g_mdrun_mpi_d.debug
+/usr/lib/debug/.build-id/bb	40755	root:root	
+/usr/lib/debug/.build-id/bb/2af50eae97df78d944a663f2c21492abc244f1	120777	root:root	../../../../bin/g_mdrun_mpi
+/usr/lib/debug/.build-id/bb/2af50eae97df78d944a663f2c21492abc244f1.debug	120777	root:root	../../usr/bin/g_mdrun_mpi.debug
 /usr/lib/debug/usr/bin/g_mdrun_mpi.debug	100644	root:root	
@@ -10,83 +10,9 @@
 /usr/src/debug/gromacs-4.0.7/include	40755	root:root	
-/usr/src/debug/gromacs-4.0.7/include/checkpoint.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/confio.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/constr.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/copyrite.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/coulomb.h	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/include/dihre.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/disre.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/domdec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/ebin.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/edsam.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/enxio.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/filenm.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/force.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/futil.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/gmx_fatal.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/gmx_random.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/gmx_wallcycle.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/gmxcomplex.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/gmxfio.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/main.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/mdatoms.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/mdebin.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/mdrun.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/mshift.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/mtop_util.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/mvdata.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/names.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/network.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/ns.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/orires.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/partdec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/pbc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/pme.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/pppm.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/pull.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/qmmm.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/random.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/readinp.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/shellfc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/smalloc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/statutil.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/strdb.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/string2.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/tgroup.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/trnio.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/txtdump.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/typedefs.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types	40755	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/atoms.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/block.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/commrec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/constr.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/energy.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/enums.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/fcdata.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/filenm.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/forcerec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/graph.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/group.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/idef.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/ifunc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/inputrec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/mdatom.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/nblist.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/nrnb.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/ns.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/nsgrid.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/pbc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/qmmmrec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/shellfc.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/simple.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/state.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/symtab.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/topology.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/types/trx.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/update.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/vcm.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/vec.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/vsite.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/xtcio.h	100644	root:root	
-/usr/src/debug/gromacs-4.0.7/include/xvgr.h	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/kernel	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/kernel	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/src	40755	root:root	
@@ -110,102 +36,22 @@
 Requires: /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug  
-Requires: /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.1.debug  
-Requires: debug64(libc.so.6)  
-Requires: debug64(libgmx_mpi.so.5)  
-Requires: debug64(libgmx_mpi_d.so.5)  
-Requires: debug64(libm.so.6)  
-Requires: debug64(libmd_mpi.so.5)  
-Requires: debug64(libmd_mpi_d.so.5)  
+Requires: gromacs-mpi-libs-debuginfo = 4.0.7-alt8
 Requires: rpmlib(PayloadIsLzma)  
 Provides: gromacs-mpi-debuginfo = 4.0.7-alt8
-File: /usr/lib/debug/.build-id/ba	40755	root:root		
-File: /usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f	120777	root:root		../../../../bin/g_mdrun_mpi_d
-File: /usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f.debug	120777	root:root		../../usr/bin/g_mdrun_mpi_d.debug
-File: /usr/lib/debug/.build-id/d0	40755	root:root		
-File: /usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8	120777	root:root		../../../../bin/g_mdrun_mpi
-File: /usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8.debug	120777	root:root		../../usr/bin/g_mdrun_mpi.debug
-File: /usr/lib/debug/usr/bin/g_mdrun_mpi.debug	100644	root:root	4253b369ce8859cfb6545312a97e8f1c	
-File: /usr/lib/debug/usr/bin/g_mdrun_mpi_d.debug	100644	root:root	de4f922b0721bc8feb47002f147c6a92	
+File: /usr/lib/debug/.build-id/3e	40755	root:root		
+File: /usr/lib/debug/.build-id/3e/d4eb801d09b5640afb5a12ab1ff8f68685298f	120777	root:root		../../../../bin/g_mdrun_mpi_d
+File: /usr/lib/debug/.build-id/3e/d4eb801d09b5640afb5a12ab1ff8f68685298f.debug	120777	root:root		../../usr/bin/g_mdrun_mpi_d.debug
+File: /usr/lib/debug/.build-id/bb	40755	root:root		
+File: /usr/lib/debug/.build-id/bb/2af50eae97df78d944a663f2c21492abc244f1	120777	root:root		../../../../bin/g_mdrun_mpi
+File: /usr/lib/debug/.build-id/bb/2af50eae97df78d944a663f2c21492abc244f1.debug	120777	root:root		../../usr/bin/g_mdrun_mpi.debug
+File: /usr/lib/debug/usr/bin/g_mdrun_mpi.debug	100644	root:root	4d32a8263b86064647ea1627fbe09805	
+File: /usr/lib/debug/usr/bin/g_mdrun_mpi_d.debug	100644	root:root	66cb45093bbddc435f0f7e480473b7c6	
 File: /usr/src/debug/gromacs-4.0.7	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/include	40755	root:root		
-File: /usr/src/debug/gromacs-4.0.7/include/checkpoint.h	100644	root:root	76f6dcb80428ee9137cec2edfa081b3a	
-File: /usr/src/debug/gromacs-4.0.7/include/confio.h	100644	root:root	6e5f341f0e38bb602819550aa6fe3fe4	
-File: /usr/src/debug/gromacs-4.0.7/include/constr.h	100644	root:root	8210e01f415cd1d45c8e16224e9cb14f	
-File: /usr/src/debug/gromacs-4.0.7/include/copyrite.h	100644	root:root	56a7a3451c20b878bf484c99dd431a68	
-File: /usr/src/debug/gromacs-4.0.7/include/coulomb.h	100644	root:root	3ee79a5f4d1841a7bd58a19ccfe54ed1	
 File: /usr/src/debug/gromacs-4.0.7/include/dihre.h	100644	root:root	0197ec8fcc71fdd490a855b49d461563	
-File: /usr/src/debug/gromacs-4.0.7/include/disre.h	100644	root:root	f81fba8c528f9a8850100074b47dff24	
-File: /usr/src/debug/gromacs-4.0.7/include/domdec.h	100644	root:root	42efa274dc6fe20768d1ed2ba2941bd1	
-File: /usr/src/debug/gromacs-4.0.7/include/ebin.h	100644	root:root	b8d6f6fd7bdafe6f188ebab39edf99e0	
-File: /usr/src/debug/gromacs-4.0.7/include/edsam.h	100644	root:root	dff973006ad88b36ca1565a6d52de58e	
-File: /usr/src/debug/gromacs-4.0.7/include/enxio.h	100644	root:root	6480378c6341d78baa2c2e931b5b88e6	
-File: /usr/src/debug/gromacs-4.0.7/include/filenm.h	100644	root:root	0641bd79f30fc816462298c4305cefa8	
-File: /usr/src/debug/gromacs-4.0.7/include/force.h	100644	root:root	097a851c2f38df2db80f73cca4719b07	
-File: /usr/src/debug/gromacs-4.0.7/include/futil.h	100644	root:root	a168110b8cdb4ffbf7b82edb0e0992f3	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_fatal.h	100644	root:root	805f54c1ca8a8d8ac4febde543e651a9	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_random.h	100644	root:root	e40aa065ccfedf30e1a6067f59b377c6	
-File: /usr/src/debug/gromacs-4.0.7/include/gmx_wallcycle.h	100644	root:root	e883b966e9d1dd3495376bd8594f3851	
-File: /usr/src/debug/gromacs-4.0.7/include/gmxcomplex.h	100644	root:root	2132879af4f29bdf3fabab68bd4ba393	
-File: /usr/src/debug/gromacs-4.0.7/include/gmxfio.h	100644	root:root	4c7f159d01a8c905ee03a9dc62ea2b27	
-File: /usr/src/debug/gromacs-4.0.7/include/main.h	100644	root:root	96e890bfece003e88c6e98186213866d	
-File: /usr/src/debug/gromacs-4.0.7/include/mdatoms.h	100644	root:root	26bf3d3cd78840332ef12a680853b667	
-File: /usr/src/debug/gromacs-4.0.7/include/mdebin.h	100644	root:root	355c608490ee928b38ea31758f2cd6bb	
-File: /usr/src/debug/gromacs-4.0.7/include/mdrun.h	100644	root:root	ab82b4aa2426af782b0375615d583e60	
-File: /usr/src/debug/gromacs-4.0.7/include/mshift.h	100644	root:root	deff679e50f959fbd095b02106300a4c	
-File: /usr/src/debug/gromacs-4.0.7/include/mtop_util.h	100644	root:root	fa4fd39cac2f9e45ffec57760effcb14	
-File: /usr/src/debug/gromacs-4.0.7/include/mvdata.h	100644	root:root	549077d5609f36173595806a70656ee2	
-File: /usr/src/debug/gromacs-4.0.7/include/names.h	100644	root:root	2986dcad1bfda3f813da9ec3d06edf10	
-File: /usr/src/debug/gromacs-4.0.7/include/network.h	100644	root:root	359c4c29f82e753aae3074f6e8f64e50	
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-File: /usr/src/debug/gromacs-4.0.7/include/orires.h	100644	root:root	e221ecec58b2d0422ae9d6406b630299	
-File: /usr/src/debug/gromacs-4.0.7/include/partdec.h	100644	root:root	77350243cfe17941c3ed67da0a9d98a3	
-File: /usr/src/debug/gromacs-4.0.7/include/pbc.h	100644	root:root	1618dddc05e5c78797b6d2d39b765f37	
-File: /usr/src/debug/gromacs-4.0.7/include/pme.h	100644	root:root	850a2e6c3e4ec39aad58a80a2c373bed	
-File: /usr/src/debug/gromacs-4.0.7/include/pppm.h	100644	root:root	2940f35238e355ac73433ec75d0cd830	
-File: /usr/src/debug/gromacs-4.0.7/include/pull.h	100644	root:root	f572cd7599f9269e30f355dda01edff8	
-File: /usr/src/debug/gromacs-4.0.7/include/qmmm.h	100644	root:root	79da40cf843f146006389c046c182d9b	
-File: /usr/src/debug/gromacs-4.0.7/include/random.h	100644	root:root	d43cb361809e82c4a285bb102d707c1b	
-File: /usr/src/debug/gromacs-4.0.7/include/readinp.h	100644	root:root	5b9f2b6a3dc79110440338d5819443f7	
-File: /usr/src/debug/gromacs-4.0.7/include/shellfc.h	100644	root:root	56fa776ab7a9d2a53387d283f9f6209b	
-File: /usr/src/debug/gromacs-4.0.7/include/smalloc.h	100644	root:root	f3a046b9f3e05de70e08b33f992aae24	
-File: /usr/src/debug/gromacs-4.0.7/include/statutil.h	100644	root:root	39144706569f7753c9669c70e81b68f3	
-File: /usr/src/debug/gromacs-4.0.7/include/strdb.h	100644	root:root	91f21943ee859b850e460e8e9b8bc08f	
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-File: /usr/src/debug/gromacs-4.0.7/include/tgroup.h	100644	root:root	5e75b58d57448364f648cc0fbb1ba8c3	
-File: /usr/src/debug/gromacs-4.0.7/include/trnio.h	100644	root:root	5ffc4a1dc434551556e74ddec7a926ec	
-File: /usr/src/debug/gromacs-4.0.7/include/txtdump.h	100644	root:root	d19ed5b19a1fb57531f279e5e939feff	
-File: /usr/src/debug/gromacs-4.0.7/include/typedefs.h	100644	root:root	c612266447a2c3e85fe06b2617ddf642	
-File: /usr/src/debug/gromacs-4.0.7/include/types	40755	root:root		
-File: /usr/src/debug/gromacs-4.0.7/include/types/atoms.h	100644	root:root	d4f13ed07f535626ca33eae4e5f79fb2	
-File: /usr/src/debug/gromacs-4.0.7/include/types/block.h	100644	root:root	56cd69e173fb32d3add7f89fedfb5f7e	
-File: /usr/src/debug/gromacs-4.0.7/include/types/commrec.h	100644	root:root	ce92fbaea95f1bbe8736ded1416d9db0	
-File: /usr/src/debug/gromacs-4.0.7/include/types/constr.h	100644	root:root	ccfa49a561733f19745ca5258adcebfb	
-File: /usr/src/debug/gromacs-4.0.7/include/types/energy.h	100644	root:root	71a3fac3505fdb0db37eb3ca59467ffa	
-File: /usr/src/debug/gromacs-4.0.7/include/types/enums.h	100644	root:root	bb693f04e3a19e207832cae3ac112f7f	
-File: /usr/src/debug/gromacs-4.0.7/include/types/fcdata.h	100644	root:root	429e6e6ed0a74ddc44d7774725c6b31a	
-File: /usr/src/debug/gromacs-4.0.7/include/types/filenm.h	100644	root:root	3b0f25b9db9c42c0e526e008f10b109a	
-File: /usr/src/debug/gromacs-4.0.7/include/types/forcerec.h	100644	root:root	edb1e3142e03e78ab059400b5de5b9d5	
-File: /usr/src/debug/gromacs-4.0.7/include/types/graph.h	100644	root:root	dfe9115b38682d5775753ad554b7666d	
-File: /usr/src/debug/gromacs-4.0.7/include/types/group.h	100644	root:root	4de7ebf811744ae77581fd344ac7957b	
-File: /usr/src/debug/gromacs-4.0.7/include/types/idef.h	100644	root:root	d6d7d03865f4de2a0dc15f23d9853338	
-File: /usr/src/debug/gromacs-4.0.7/include/types/ifunc.h	100644	root:root	d06a687f8c24721eae43fcdb142ff8cd	
-File: /usr/src/debug/gromacs-4.0.7/include/types/inputrec.h	100644	root:root	9469abfa804287ae990c9d78c2c83370	
-File: /usr/src/debug/gromacs-4.0.7/include/types/mdatom.h	100644	root:root	9b9fd05b1fd0c54f0ab94b2648032f19	
-File: /usr/src/debug/gromacs-4.0.7/include/types/nblist.h	100644	root:root	a34ab8fdb2a1a14695c4d367336fe1a0	
-File: /usr/src/debug/gromacs-4.0.7/include/types/nrnb.h	100644	root:root	2b82e6968012b3adde8cb12bfa8801e5	
-File: /usr/src/debug/gromacs-4.0.7/include/types/ns.h	100644	root:root	747a4af5394d38ae28ed70354f6f9844	
-File: /usr/src/debug/gromacs-4.0.7/include/types/nsgrid.h	100644	root:root	e79d243a84fe091cb0504d78e9496691	
-File: /usr/src/debug/gromacs-4.0.7/include/types/pbc.h	100644	root:root	1947d270c526c862e68c4058f91b5184	
-File: /usr/src/debug/gromacs-4.0.7/include/types/qmmmrec.h	100644	root:root	bec1435ee700e2d1087300832d8e803c	
-File: /usr/src/debug/gromacs-4.0.7/include/types/shellfc.h	100644	root:root	c82abf85846b680c54d9a9d8c898af9d	
-File: /usr/src/debug/gromacs-4.0.7/include/types/simple.h	100644	root:root	769b8a34371983830f57c66794f815bf	
-File: /usr/src/debug/gromacs-4.0.7/include/types/state.h	100644	root:root	086e3d214690ba0e5f1cfe13f765d3af	
-File: /usr/src/debug/gromacs-4.0.7/include/types/symtab.h	100644	root:root	daffb3f6abcbe11ef58b0dd7bddca4a8	
-File: /usr/src/debug/gromacs-4.0.7/include/types/topology.h	100644	root:root	4b76cb990fa7817568d6a74292629570	
-File: /usr/src/debug/gromacs-4.0.7/include/types/trx.h	100644	root:root	50f23758cb8b1f363c4075bc96647b1a	
-File: /usr/src/debug/gromacs-4.0.7/include/update.h	100644	root:root	5a2cdeb041e76bd9131961441c7acfed	
-File: /usr/src/debug/gromacs-4.0.7/include/vcm.h	100644	root:root	6233da233e81f11ca4811d1cc144c88e	
-File: /usr/src/debug/gromacs-4.0.7/include/vec.h	100644	root:root	7eef2b3269e59411f588a16f3c937788	
-File: /usr/src/debug/gromacs-4.0.7/include/vsite.h	100644	root:root	e25b6a96d36b2ccf4c7499c692c9fa3e	
-File: /usr/src/debug/gromacs-4.0.7/include/xtcio.h	100644	root:root	1c69add0222cc0a7f41f27ba4a8854c0	
-File: /usr/src/debug/gromacs-4.0.7/include/xvgr.h	100644	root:root	3ebb5274eb05c80f0bc1a0e3d7df7729	
+File: /usr/src/debug/gromacs-4.0.7/mpi-double	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/kernel	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/kernel	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/src	40755	root:root		
@@ -227,2 +73,2 @@
 File: /usr/src/debug/gromacs-4.0.7/src/kernel/xutils.c	100644	root:root	aca52234a097d241ac7c841123ae7cca	
-RPMIdentity: 4c38e4c0462eb71fede52bb8b4f64c4c88dacfd2a3332ccafad188b38412ae6db9f218da19895912fda6a4b9ccbf46a3e050e2151224558e6318d73dff6a982a
+RPMIdentity: 82760d05924058f64c3938f2fc1039ec76bffa2ab12aaf93595185aba0595b0fbddd97cc697acd24046f246cf7b7145293be0d818c16f5b5d1ada7c2bc81c555
--- gromacs-mpi-devel-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-mpi-devel-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.908497207 +0000
@@ -16,2 +16,2 @@
 File: /usr/lib64/libmd_mpi_d.so	120777	root:root		libmd_mpi_d.so.5.0.0
-RPMIdentity: eb6a5a0821e0ee67cc06c65e872bbf3d72a802333ecc7c3f154016d808fb8b5af7d9578bdca9de47da6737f73e29e0211dd9a835c0cee09edf9e3abee599c685
+RPMIdentity: 0dbc06f6b6ce153d5080502a7410470c52d3bde1fbb559c06795fcab017cdb7ebd07dd6fc6de836a5f60bcdf38fc673f7a1cd63790ceaeece5fc11fdcfc9a1b7
--- gromacs-mpi-libs-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-mpi-libs-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:35.980497332 +0000
@@ -15,4 +15,5 @@
 Requires: gromacs-common = 4.0.7-alt8
-Requires: /usr/lib64/openmpi/lib/libmpi.so.1  
+Requires: /usr/lib64/openmpi/lib/libmpi.so.20  
 Requires: libc.so.6(GLIBC_2.11)(64bit)  
+Requires: libc.so.6(GLIBC_2.14)(64bit)  
 Requires: libc.so.6(GLIBC_2.2.5)(64bit)  
@@ -22,8 +23,9 @@
 Requires: libc.so.6(GLIBC_2.7)(64bit)  
-Requires: libfftw3.so.3()(64bit) >= set:njvWohu96CktcRqXhkPvHBAu6qHBD02ZmK8KoqUbFM1OiA0
+Requires: libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1
 Requires: rpmlib(SetVersions)  
-Requires: libfftw3f.so.3()(64bit) >= set:njd9yz66TfRRr1P91P6VQRZaA59LbaV5uJsDO2VZmyMt3k0
-Requires: libgsl.so.0()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
+Requires: libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3
+Requires: libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1
 Requires: liblapack.so.4()(64bit) >= set:omax1kCj8
 Requires: libm.so.6(GLIBC_2.2.5)(64bit)  
+Requires: libm.so.6(GLIBC_2.27)(64bit)  
 Requires: libopenblas.so.0()(64bit)  
@@ -40,15 +42,15 @@
 File: /usr/lib64/libgmx_mpi.so.5	120777	root:root		libgmx_mpi.so.5.0.0
-File: /usr/lib64/libgmx_mpi.so.5.0.0	100644	root:root	cd4261d9bc341bac4c98c21bc5c3fd6f	
+File: /usr/lib64/libgmx_mpi.so.5.0.0	100644	root:root	dce9c2801db617d19f704335b93b3bd0	
 File: /usr/lib64/libgmx_mpi_d.so.5	120777	root:root		libgmx_mpi_d.so.5.0.0
-File: /usr/lib64/libgmx_mpi_d.so.5.0.0	100644	root:root	3cf6a40e1e33fe9999d7e4cf92a1b2e7	
+File: /usr/lib64/libgmx_mpi_d.so.5.0.0	100644	root:root	7afd6da6892b6ab1473c528904649a11	
 File: /usr/lib64/libgmxana_mpi.so.5	120777	root:root		libgmxana_mpi.so.5.0.0
-File: /usr/lib64/libgmxana_mpi.so.5.0.0	100644	root:root	c9f1167fa5e0d3c73bd695e3521a8a22	
+File: /usr/lib64/libgmxana_mpi.so.5.0.0	100644	root:root	42b4854cba6538eda1bb44ed0dca184f	
 File: /usr/lib64/libgmxana_mpi_d.so.5	120777	root:root		libgmxana_mpi_d.so.5.0.0
-File: /usr/lib64/libgmxana_mpi_d.so.5.0.0	100644	root:root	7a0050f971aa99da723aa271f350b0d1	
+File: /usr/lib64/libgmxana_mpi_d.so.5.0.0	100644	root:root	b2e023c5fc015c0c59ba4f62219808f4	
 File: /usr/lib64/libmd_mpi.so.5	120777	root:root		libmd_mpi.so.5.0.0T
-File: /usr/lib64/libmd_mpi.so.5.0.0	100644	root:root	36fa8f616a6b52e66ba9b12601744e35	
-File: /usr/lib64/libmd_mpi.so.5.0.0T	100644	root:root	412c1ca6ccea1523cde4e777e5219e7d	
+File: /usr/lib64/libmd_mpi.so.5.0.0	100644	root:root	20de36dbdc92e8d44a843194af2c3b5a	
+File: /usr/lib64/libmd_mpi.so.5.0.0T	100644	root:root	6c1149a3ed22983d8882df6f4c4f0137	
 File: /usr/lib64/libmd_mpi_d.so.5	120777	root:root		libmd_mpi_d.so.5.0.0T
-File: /usr/lib64/libmd_mpi_d.so.5.0.0	100644	root:root	dac2488ff9f626d9095670ef625f11ac	
-File: /usr/lib64/libmd_mpi_d.so.5.0.0T	100644	root:root	eb8ce7a4ee6a75749bf9c8a33ce354a6	
-RPMIdentity: f66eb4d643a561fa86742f0fd6c1ca01190405a7b0e41656ca9acecea57e40571cdf6bf813514f34b45a4469bf650a6fdb5ff00aa53e8e52d6bcff8a6dc76dd8
+File: /usr/lib64/libmd_mpi_d.so.5.0.0	100644	root:root	ed4a5fc94597b718bc36b1a87c09491c	
+File: /usr/lib64/libmd_mpi_d.so.5.0.0T	100644	root:root	d3bbab0dcf7fd533f04ceeb6d8871cd6	
+RPMIdentity: 9140eea7327444d4981de5108334d317c294b1c296990b845d15e2af465e16789490ebc2f562ced14bd643e8b59ad08f1e27423aa1b102b17179dc0b4b33e452
--- gromacs-mpi-libs-debuginfo-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-mpi-libs-debuginfo-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:36.068497484 +0000
@@ -1,19 +1,19 @@
-/usr/lib/debug/.build-id/44	40755	root:root	
-/usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e	120777	root:root	../../../../lib64/libmd_mpi.so.5.0.0
-/usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e.debug	120777	root:root	../../usr/lib64/libmd_mpi.so.5.0.0.debug
-/usr/lib/debug/.build-id/62	40755	root:root	
-/usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d	120777	root:root	../../../../lib64/libgmxana_mpi_d.so.5.0.0
-/usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d.debug	120777	root:root	../../usr/lib64/libgmxana_mpi_d.so.5.0.0.debug
-/usr/lib/debug/.build-id/66	40755	root:root	
-/usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c	120777	root:root	../../../../lib64/libgmx_mpi_d.so.5.0.0
-/usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c.debug	120777	root:root	../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug
-/usr/lib/debug/.build-id/67	40755	root:root	
-/usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e	120777	root:root	../../../../lib64/libgmx_mpi.so.5.0.0
-/usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e.debug	120777	root:root	../../usr/lib64/libgmx_mpi.so.5.0.0.debug
-/usr/lib/debug/.build-id/7a	40755	root:root	
-/usr/lib/debug/.build-id/7a/8b0782174ffe7ae0ab97d10a16b80f1696a9a8	120777	root:root	../../../../lib64/libmd_mpi_d.so.5.0.0
-/usr/lib/debug/.build-id/7a/8b0782174ffe7ae0ab97d10a16b80f1696a9a8.debug	120777	root:root	../../usr/lib64/libmd_mpi_d.so.5.0.0.debug
-/usr/lib/debug/.build-id/af	40755	root:root	
-/usr/lib/debug/.build-id/af/b81cbead335fe56f7cfdf02aa1cab81446885c	120777	root:root	../../../../lib64/libgmxana_mpi.so.5.0.0
-/usr/lib/debug/.build-id/af/b81cbead335fe56f7cfdf02aa1cab81446885c.debug	120777	root:root	../../usr/lib64/libgmxana_mpi.so.5.0.0.debug
+/usr/lib/debug/.build-id/0d	40755	root:root	
+/usr/lib/debug/.build-id/0d/fa8785ee596d78415501ce4ba5c7977a5df45a	120777	root:root	../../../../lib64/libgmxana_mpi.so.5.0.0
+/usr/lib/debug/.build-id/0d/fa8785ee596d78415501ce4ba5c7977a5df45a.debug	120777	root:root	../../usr/lib64/libgmxana_mpi.so.5.0.0.debug
+/usr/lib/debug/.build-id/27	40755	root:root	
+/usr/lib/debug/.build-id/27/870a6f2e03be127fbc8acaf5e3da679b653c9a	120777	root:root	../../../../lib64/libmd_mpi_d.so.5.0.0
+/usr/lib/debug/.build-id/27/870a6f2e03be127fbc8acaf5e3da679b653c9a.debug	120777	root:root	../../usr/lib64/libmd_mpi_d.so.5.0.0.debug
+/usr/lib/debug/.build-id/6e	40755	root:root	
+/usr/lib/debug/.build-id/6e/9fc4aee8ad3d0c199159b698596884a05795b0	120777	root:root	../../../../lib64/libmd_mpi.so.5.0.0
+/usr/lib/debug/.build-id/6e/9fc4aee8ad3d0c199159b698596884a05795b0.debug	120777	root:root	../../usr/lib64/libmd_mpi.so.5.0.0.debug
+/usr/lib/debug/.build-id/82	40755	root:root	
+/usr/lib/debug/.build-id/82/699b4d7d2eec38ad2da8369452a175a9d23aaf	120777	root:root	../../../../lib64/libgmxana_mpi_d.so.5.0.0
+/usr/lib/debug/.build-id/82/699b4d7d2eec38ad2da8369452a175a9d23aaf.debug	120777	root:root	../../usr/lib64/libgmxana_mpi_d.so.5.0.0.debug
+/usr/lib/debug/.build-id/9d	40755	root:root	
+/usr/lib/debug/.build-id/9d/e3c68298d2c5302ebfefc2b506ea4c64da4ab1	120777	root:root	../../../../lib64/libgmx_mpi_d.so.5.0.0
+/usr/lib/debug/.build-id/9d/e3c68298d2c5302ebfefc2b506ea4c64da4ab1.debug	120777	root:root	../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug
+/usr/lib/debug/.build-id/d3	40755	root:root	
+/usr/lib/debug/.build-id/d3/702e3dc53e45639c07406dce1fc16a3e57222a	120777	root:root	../../../../lib64/libgmx_mpi.so.5.0.0
+/usr/lib/debug/.build-id/d3/702e3dc53e45639c07406dce1fc16a3e57222a.debug	120777	root:root	../../usr/lib64/libgmx_mpi.so.5.0.0.debug
 /usr/lib/debug/usr/lib64/libgmx_mpi.so.5.0.0.debug	100644	root:root	
@@ -69,2 +69,3 @@
 /usr/src/debug/gromacs-4.0.7/include/invblock.h	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/include/macros.h	100644	root:root	
 /usr/src/debug/gromacs-4.0.7/include/main.h	100644	root:root	
@@ -160,2 +161,4 @@
 /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded	40755	root:root	
@@ -229,2 +232,5 @@
 /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/mdlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-double/src/tools	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/mpi-single	40755	root:root	
@@ -232,2 +238,4 @@
 /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded	40755	root:root	
@@ -301,2 +309,5 @@
 /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/mdlib	40755	root:root	
+/usr/src/debug/gromacs-4.0.7/mpi-single/src/tools	40755	root:root	
 /usr/src/debug/gromacs-4.0.7/src	40755	root:root	
@@ -869,3 +880,3 @@
 Requires: gromacs-mpi-libs = 4.0.7-alt8
-Requires: /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.1.debug  
+Requires: /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.20.debug  
 Requires: debug64(libc.so.6)  
@@ -873,3 +884,3 @@
 Requires: debug64(libfftw3f.so.3)  
-Requires: debug64(libgsl.so.0)  
+Requires: debug64(libgsl.so.23)  
 Requires: debug64(liblapack.so.4)  
@@ -886,33 +897,33 @@
 Provides: gromacs-mpi-libs-debuginfo = 4.0.7-alt8
-File: /usr/lib/debug/.build-id/44	40755	root:root		
-File: /usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e	120777	root:root		../../../../lib64/libmd_mpi.so.5.0.0
-File: /usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e.debug	120777	root:root		../../usr/lib64/libmd_mpi.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/62	40755	root:root		
-File: /usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d	120777	root:root		../../../../lib64/libgmxana_mpi_d.so.5.0.0
-File: /usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d.debug	120777	root:root		../../usr/lib64/libgmxana_mpi_d.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/66	40755	root:root		
-File: /usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c	120777	root:root		../../../../lib64/libgmx_mpi_d.so.5.0.0
-File: /usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c.debug	120777	root:root		../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/67	40755	root:root		
-File: /usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e	120777	root:root		../../../../lib64/libgmx_mpi.so.5.0.0
-File: /usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e.debug	120777	root:root		../../usr/lib64/libgmx_mpi.so.5.0.0.debug
-File: /usr/lib/debug/.build-id/7a	40755	root:root		
-File: /usr/lib/debug/.build-id/7a/8b0782174ffe7ae0ab97d10a16b80f1696a9a8	120777	root:root		../../../../lib64/libmd_mpi_d.so.5.0.0
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 File: /usr/lib/debug/usr/lib64/libgmx_mpi_d.so.5.debug	120777	root:root		libgmx_mpi_d.so.5.0.0.debug
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 File: /usr/lib/debug/usr/lib64/libgmxana_mpi.so.5.debug	120777	root:root		libgmxana_mpi.so.5.0.0.debug
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 File: /usr/lib/debug/usr/lib64/libgmxana_mpi_d.so.5.debug	120777	root:root		libgmxana_mpi_d.so.5.0.0.debug
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 File: /usr/lib/debug/usr/lib64/libmd_mpi.so.5.debug	120777	root:root		libmd_mpi.so.5.0.0T.debug
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 File: /usr/lib/debug/usr/lib64/libmd_mpi_d.so.5.debug	120777	root:root		libmd_mpi_d.so.5.0.0T.debug
@@ -955,2 +966,3 @@
 File: /usr/src/debug/gromacs-4.0.7/include/invblock.h	100644	root:root	c4bf8a0c74fbe2cc9cc3bebc1dae2445	
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 File: /usr/src/debug/gromacs-4.0.7/include/main.h	100644	root:root	96e890bfece003e88c6e98186213866d	
@@ -1046,2 +1058,4 @@
 File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded	40755	root:root		
@@ -1115,2 +1129,5 @@
 File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	1fb49eb716da46519321f206f775d744	
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/mdlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/tools	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/mpi-single	40755	root:root		
@@ -1118,2 +1135,4 @@
 File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded	40755	root:root		
@@ -1187,2 +1206,5 @@
 File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f	100644	root:root	6c4c5b1b30d68b9a5b73c10024944bc3	
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/mdlib	40755	root:root		
+File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/tools	40755	root:root		
 File: /usr/src/debug/gromacs-4.0.7/src	40755	root:root		
@@ -1754,2 +1776,2 @@
 File: /usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c	100644	root:root	8affa9c2397fc3c2e35f4d53bf34a51c	
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--- gromacs-shell-extensions-4.0.7-alt8.x86_64.rpm.repo	2012-08-11 20:29:06.000000000 +0000
+++ gromacs-shell-extensions-4.0.7-alt8.x86_64.rpm.hasher	2022-03-20 07:37:36.140497609 +0000
@@ -17,2 +17,2 @@
 File: /usr/share/zsh/site-functions/gromacs	100644	root:root	d6549519fa765aba8b33a97ad6960a7a	
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--- gromacs-tutor-4.0.7-alt8.noarch.rpm.repo	2012-08-11 20:29:04.000000000 +0000
+++ gromacs-tutor-4.0.7-alt8.noarch.rpm.hasher	2022-03-20 07:37:36.211497732 +0000
@@ -87,2 +87,2 @@
 File: /usr/share/gromacs/tutor/water/topol.top	100644	root:root	898507f42840fc4fe65d59bddd6fd899	
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